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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-06-01 11:07:27 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-06-01 11:07:27 +0200 |
| commit | cd95d7ddd180f244059e1b3585b2f8ba4c9d5024 (patch) | |
| tree | 2483aea36b04257d8e1cb0790ce28ac4af9861b1 | |
| parent | 0aae2f7f013e3f12eb573bdda4d0b64bb536d25f (diff) | |
| download | guix-cd95d7ddd180f244059e1b3585b2f8ba4c9d5024.tar guix-cd95d7ddd180f244059e1b3585b2f8ba4c9d5024.tar.gz | |
gnu: pigx-rnaseq: Update to 0.1.0.
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.1.0.
[arguments]: Remove phase 'patch-knitr.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 11 |
1 files changed, 2 insertions, 9 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9811a0b9e2..1ffac1a0ca 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10441,7 +10441,7 @@ once. This package provides tools to perform Drop-seq analyses.") (define-public pigx-rnaseq (package (name "pigx-rnaseq") - (version "0.0.21") + (version "0.1.0") (source (origin (method url-fetch) (uri (string-append "https://github.com/BIMSBbioinfo/pigx_rnaseq/" @@ -10449,19 +10449,12 @@ once. This package provides tools to perform Drop-seq analyses.") "/pigx_rnaseq-" version ".tar.gz")) (sha256 (base32 - "0367jn73vja94ch9fwgaiwy62rbxfzc85xz6blzbkjyzhph1r173")))) + "0acdjimfb9ywba8zsv7lavv436pmcmp8ra683h11wr4s3681pqk8")))) (build-system gnu-build-system) (arguments `(#:parallel-tests? #f ; not supported #:phases (modify-phases %standard-phases - ;; knitr 0.39 changes the default behavior of how graphics are - ;; included. - (add-after 'unpack 'patch-knitr - (lambda _ - (substitute* "scripts/runDeseqReport.R" - (("outFile <- paste0" m) - (string-append "options(knitr.graphics.rel_path = FALSE)\n" m))))) ;; "test.sh" runs the whole pipeline, which takes a long time and ;; might fail due to OOM. The MultiQC is also resource intensive. (add-after 'unpack 'disable-resource-intensive-test |