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| author | Navid Afkhami <navid.afkhami@mdc-berlin.de> | 2023-03-03 13:07:23 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-03-03 15:11:43 +0100 |
| commit | c6480edbe3260a3bfb48361ca73e666b6d473f42 (patch) | |
| tree | 6f36f87278042a49793d4e39002867d1a6a6706c | |
| parent | 03ef0914d5cb561ab1e0091c88457e6538b0231f (diff) | |
| download | guix-c6480edbe3260a3bfb48361ca73e666b6d473f42.tar guix-c6480edbe3260a3bfb48361ca73e666b6d473f42.tar.gz | |
gnu: Add r-seurat-utils.
* gnu/packages/bioinformatics.scm (r-seurat-utils): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 54 |
1 files changed, 54 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cb6f6c5af1..85b81b2c81 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -15939,6 +15939,60 @@ information... The package can also be used to extract data from @code{.loom} files.") (license license:expat)))) +(define-public r-seurat-utils + (let ((commit "0b6f5b548a49148cfbeaa654e8a618c0a020afa5") + (revision "1")) + (package + (name "r-seurat-utils") + (version (git-version "1.6.5" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/vertesy/Seurat.utils") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1mn64h375mkj6x4ix5493z32gqg96yc507j5jr0lx9g5wk1bf762")))) + (properties `((upstream-name . "Seurat.utils"))) + (build-system r-build-system) + (propagated-inputs (list r-codeandroll2 + r-cowplot + r-dplyr + r-ggcorrplot + r-ggexpress + r-ggplot2 + r-ggpubr + r-ggrepel + r-hgnchelper + r-htmlwidgets + r-markdownhelpers + r-markdownreports + r-matrix + r-matrixstats + r-princurve + r-r-utils + r-readr + r-readwriter + r-reshape2 + r-scales + r-seurat + r-soupx + r-sparsematrixstats + r-stringendo + r-stringr + r-tibble + r-tictoc + r-vroom)) + (home-page "https://github.com/vertesy/Seurat.utils") + (synopsis "Collection of utility functions for Seurat") + (description + "This is a collection of utility functions for Seurat. These functions +allow the automation and multiplexing of plotting, 3D plotting, visualization +of statistics & QC, interaction with the Seurat object. Some functionalities +require functions from CodeAndRoll and MarkdownReports libraries.") + (license license:gpl3)))) + (define-public r-seuratwrappers ;; There are no releases or tags. (let ((commit "d28512f804d5fe05e6d68900ca9221020d52cf1d") |