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| author | Navid Afkhami <navid.afkhami@mdc-berlin.de> | 2023-06-09 16:05:57 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-06-09 16:56:22 +0200 |
| commit | c348b1be3891e6eb47bbdd9fc1587aba2b6ab0b7 (patch) | |
| tree | b71fbe81e1cf609f7538bb72ab31d5bb81f6e52e | |
| parent | 6dc44cc963b88cb13f012deea17fdb7021a3119b (diff) | |
| download | guix-c348b1be3891e6eb47bbdd9fc1587aba2b6ab0b7.tar guix-c348b1be3891e6eb47bbdd9fc1587aba2b6ab0b7.tar.gz | |
gnu: Add python-mofax.
* gnu/packages/bioinformatics.scm (python-mofax): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9ce28596c2..38c5195146 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3312,6 +3312,51 @@ off-target reads for a capture method that targets CpG-rich region.") multiple sequence alignments.") (license license:expat))) +(define-public python-mofax + ;; This is a recent commit from the "dev" branch, which is much more recent + ;; than the latest commit from the "master" branch. + (let ((commit "4d96f8f0a5d5251847353656f523684d66c3c47a") + (revision "0")) + (package + (name "python-mofax") + (version (git-version "0.4.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/bioFAM/mofax") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1lwrw0qyvvnyiqz1l20dhcf7dxidb80cqgvk78czvdgba87yxzqx")) + (modules '((guix build utils))) + ;; Prevent the pyproject-build-system from guessing that flit + ;; should be used as a builder. + (snippet '(substitute* "pyproject.toml" + (("^#.*") ""))))) + (build-system pyproject-build-system) + (arguments + (list + ;; This test is failing due to a bug. The bug has been reported to the + ;; developers. See https://github.com/bioFAM/mofax/issues/12 for more + ;; info. + #:test-flags '(list "-k" "not test_get_methods"))) + (propagated-inputs (list python-h5py + python-matplotlib + python-pandas + python-poetry-core + python-scipy + python-seaborn)) + (native-inputs (list python-numpy python-pytest)) + (home-page "https://github.com/bioFAM/mofax") + (synopsis + "Motif activity finder for transcription factor motif analysis") + (description + "MoFax is a Python package for transcription factor motif analysis. +It provides convenience functions to load and visualize factor models trained +with MOFA+ in Python.") + (license license:expat)))) + (define-public python-pyega3 (package (name "python-pyega3") |