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authorRicardo Wurmus <rekado@elephly.net>2021-06-21 13:02:39 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-06-21 13:02:39 +0200
commit8a62d8685af8eb0b913c86a9a664692fa3399bc0 (patch)
treefa5f69f9082c22a9d39355414015ce2fe69eed4a
parent38d829cf24cd56499dcc1010c9c40bc8dc93ab18 (diff)
downloadguix-8a62d8685af8eb0b913c86a9a664692fa3399bc0.tar
guix-8a62d8685af8eb0b913c86a9a664692fa3399bc0.tar.gz
gnu: Add python-iced.
* gnu/packages/bioinformatics.scm (python-iced): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm24
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7a1c8cc8e3..85d4e5a185 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11957,6 +11957,30 @@ options), bedgraph, links (represented as arcs), and Hi-C matrices.
pyGenomeTracks can make plots with or without Hi-C data.")
(license license:gpl3+)))
+(define-public python-iced
+ (package
+ (name "python-iced")
+ (version "0.5.8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "iced" version))
+ (sha256
+ (base32
+ "1avcjmpyyvhgbj5qca4l70ipiz7j3xmcw9p6rd9c06j99faa0r71"))))
+ (build-system python-build-system)
+ (arguments `(#:tests? #false)) ; there are none
+ (propagated-inputs
+ `(("python-numpy" ,python-numpy)
+ ("python-pandas" ,python-pandas)
+ ("python-scipy" ,python-scipy)
+ ("python-scikit-learn" ,python-scikit-learn)))
+ (home-page "https://github.com/hiclib/iced")
+ (synopsis "ICE normalization")
+ (description "This is a package for normalizing Hi-C contact counts
+efficiently.")
+ (license license:bsd-3)))
+
(define-public python-hic2cool
(package
(name "python-hic2cool")