diff options
| author | Lars-Dominik Braun <lars@6xq.net> | 2021-07-20 13:50:23 +0200 |
|---|---|---|
| committer | Lars-Dominik Braun <lars@6xq.net> | 2021-07-21 13:36:08 +0200 |
| commit | 690df95d1aafa40143d0fe9989021af22e845029 (patch) | |
| tree | 68340bcb8cec05291abc4c2cf97fcb7b6d0d1739 | |
| parent | 2b665b8a49063803290fcacaa4a36426384f0b19 (diff) | |
| download | guix-690df95d1aafa40143d0fe9989021af22e845029.tar guix-690df95d1aafa40143d0fe9989021af22e845029.tar.gz | |
gnu: Add nanosv.
* gnu/packages/bioinformatics.scm (nanosv): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6aaee38295..7dcc6da1cb 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14637,3 +14637,26 @@ for the analysis and visualization of raw nanopore signal.") (description "This package provides a @acronym{VCF,Variant Call Format} parser for Python.") (license license:expat))) + +(define-public nanosv + (package + (name "nanosv") + (version "1.2.4") + (source (origin + (method url-fetch) + (uri (pypi-uri "NanoSV" version)) + (sha256 + (base32 + "1wl2daj0bwrl8fx5xi8j8hfs3mp3vg3qycy66538n032v1qkc6xg")))) + (build-system python-build-system) + (inputs + `(("python-configparser" ,python-configparser) + ("python-pysam" ,python-pysam) + ("python-pyvcf" ,python-pyvcf))) + (home-page "https://github.com/mroosmalen/nanosv") + (synopsis "Structural variation detection tool for Oxford Nanopore data.") + (description "NanoSV is a software package that can be used to identify +structural genomic variations in long-read sequencing data, such as data +produced by Oxford Nanopore Technologies’ MinION, GridION or PromethION +instruments, or Pacific Biosciences RSII or Sequel sequencers.") + (license license:expat))) |