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| author | Afkhami, Navid <Navid.Afkhami@mdc-berlin.de> | 2024-06-10 15:41:37 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-06-28 22:37:36 +0200 |
| commit | 385fb14f6482a955fbef4d4b21fccb3473beddd8 (patch) | |
| tree | 9ec9157047dca788fa113f2838fcf1d54fc7c552 | |
| parent | ae55410e0752000268b31c71dddea58e6106522a (diff) | |
| download | guix-385fb14f6482a955fbef4d4b21fccb3473beddd8.tar guix-385fb14f6482a955fbef4d4b21fccb3473beddd8.tar.gz | |
gnu: Add r-rphyloxml.
* gnu/packages/bioinformatics.scm (r-rphyloxml): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I5b799986064f2af5fe74454f2e78fea7d9947260
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 52 |
1 files changed, 52 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index afdf818b07..8e497f1199 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14177,6 +14177,58 @@ an important subset of samtools functionality, including view, index, sort, markdup, and depth.") (license license:gpl2+))) +(define-public r-rphyloxml + (let ((commit "a30e39249239b2de01d6964ae2a2205a6c48b475") + (revision "1")) + (package + (name "r-rphyloxml") + (version (git-version "0.0-9000" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/USCbiostats/rphyloxml") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "15ijzqvjxx6vqyqlg5asdbqlhw1g0ix6palf1rism3si0qapddgw")) + (snippet + '(delete-file "docs/jquery.sticky-kit.min.js")))) + (properties `((upstream-name . "rphyloxml"))) + (build-system r-build-system) + (arguments + (list + #:modules + '((guix build r-build-system) + (guix build minify-build-system) + (guix build utils)) + #:imported-modules + `(,@%r-build-system-modules (guix build minify-build-system)) + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'process-javascript + (lambda* (#:key inputs #:allow-other-keys) + (with-directory-excursion "inst/" + (minify (assoc-ref inputs "js-jquery-sticky-kit") + #:target "docs/jquery.sticky-kit.min.js"))))))) + (propagated-inputs (list r-ape r-xml2)) + (native-inputs + `(("esbuild" ,esbuild) + ("js-jquery-sticky-kit" + ,(origin + (method url-fetch) + (uri "https://raw.githubusercontent.com/leafo/sticky-kit/\ +v1.1.2/jquery.sticky-kit.js") + (sha256 + (base32 + "17c3a1hqc3ybwj7hpw8prazajp2x98aq7nyfn71h6lzjvblq297g")))))) + (home-page "https://github.com/USCbiostats/rphyloxml") + (synopsis "Read and write phyloXML files in R") + (description + "The package reads phylogenetic data in the @code{phyloXML} format. +It also includes functions for writing data in this format.") + (license license:expat)))) + (define-public ritornello (package (name "ritornello") |