diff options
| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-04-11 13:27:27 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-04-11 15:39:29 +0200 |
| commit | 3704a7b8978d510a8bbeae0a92ed60ece808f5ac (patch) | |
| tree | 4f3eb8432d98728a59ba58fe0afe9cd4aa962f10 | |
| parent | fc7f80707872a35794c242da11637c4e3dab7d95 (diff) | |
| download | guix-3704a7b8978d510a8bbeae0a92ed60ece808f5ac.tar guix-3704a7b8978d510a8bbeae0a92ed60ece808f5ac.tar.gz | |
gnu: Add r-tricycle.
* gnu/packages/bioconductor.scm (r-tricycle): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| -rw-r--r-- | gnu/packages/bioconductor.scm | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ce1e23f0bf..e6555c93df 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -775,6 +775,43 @@ Ensembl.") Ensembl.") (license license:artistic2.0))) +(define-public r-tricycle + (package + (name "r-tricycle") + (version "1.2.1") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "tricycle" version)) + (sha256 + (base32 + "19yh7yif8630j845m9rddva2z0xy4jcw9j4hvyr076jqbyxz998r")))) + (properties `((upstream-name . "tricycle"))) + (build-system r-build-system) + (propagated-inputs (list r-annotationdbi + r-circular + r-dplyr + r-genomicranges + r-ggplot2 + r-iranges + r-rcolorbrewer + r-s4vectors + r-scater + r-scattermore + r-singlecellexperiment + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/hansenlab/tricycle") + (synopsis "Transferable representation and inference of cell cycle") + (description + "The package contains functions to infer and visualize cell cycle process +using Single-cell RNA-Seq data. It exploits the idea of transfer learning, +projecting new data to the previous learned biologically interpretable space. +The @code{tricycle} provides a pre-learned cell cycle space, which could be +used to infer cell cycle time of human and mouse single cell samples. In +addition, it also offer functions to visualize cell cycle time on different +embeddings and functions to build new reference.") + (license license:gpl3))) + (define-public r-txdb-dmelanogaster-ucsc-dm6-ensgene (package (name "r-txdb-dmelanogaster-ucsc-dm6-ensgene") |