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authorRicardo Wurmus <rekado@elephly.net>2019-03-13 13:16:48 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-13 13:17:52 +0100
commit34a24f95ece7be7e5174513091ecd3c4974ce631 (patch)
treeed61ae8b40621d7b4513d852fba1e3ceeb6e061e
parentf4eac09653ddebbe57e16824da42aad04af35632 (diff)
downloadguix-34a24f95ece7be7e5174513091ecd3c4974ce631.tar
guix-34a24f95ece7be7e5174513091ecd3c4974ce631.tar.gz
gnu: Add r-bumphunter.
* gnu/packages/bioconductor.scm (r-bumphunter): New variable.
-rw-r--r--gnu/packages/bioconductor.scm34
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b29ae9d607..34f5ceb5aa 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2200,3 +2200,37 @@ expressed genes and estimation of the @dfn{False Discovery Rate} (FDR) using
both the Significance Analysis of Microarrays (SAM) and the @dfn{Empirical
Bayes Analyses of Microarrays} (EBAM).")
(license license:lgpl2.0+)))
+
+(define-public r-bumphunter
+ (package
+ (name "r-bumphunter")
+ (version "1.24.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "bumphunter" version))
+ (sha256
+ (base32
+ "1f9vk3srffbx8jpza40nd18a4y0p0z8q40mx55dlcnddkwrqi19b"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-dorng" ,r-dorng)
+ ("r-foreach" ,r-foreach)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-iterators" ,r-iterators)
+ ("r-limma" ,r-limma)
+ ("r-locfit" ,r-locfit)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://github.com/ririzarr/bumphunter")
+ (synopsis "Find bumps in genomic data")
+ (description
+ "This package provides tools for finding bumps in genomic data in order
+to identify differentially methylated regions in epigenetic epidemiology
+studies.")
+ (license license:artistic2.0)))