aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages/cran.scm
blob: c096a9d037895f798f583dc8a98b32f7029e5d32 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459
1460
1461
1462
1463
1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
1490
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
1561
1562
1563
1564
1565
1566
1567
1568
1569
1570
1571
1572
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
1631
1632
1633
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
1656
1657
1658
1659
1660
1661
1662
1663
1664
1665
1666
1667
1668
1669
1670
1671
1672
1673
1674
1675
1676
1677
1678
1679
1680
1681
1682
1683
1684
1685
1686
1687
1688
1689
1690
1691
1692
1693
1694
1695
1696
1697
1698
1699
1700
1701
1702
1703
1704
1705
1706
1707
1708
1709
1710
1711
1712
1713
1714
1715
1716
1717
1718
1719
1720
1721
1722
1723
1724
1725
1726
1727
1728
1729
1730
1731
1732
1733
1734
1735
1736
1737
1738
1739
1740
1741
1742
1743
1744
1745
1746
1747
1748
1749
1750
1751
1752
1753
1754
1755
1756
1757
1758
1759
1760
1761
1762
1763
1764
1765
1766
1767
1768
1769
1770
1771
1772
1773
1774
1775
1776
1777
1778
1779
1780
1781
1782
1783
1784
1785
1786
1787
1788
1789
1790
1791
1792
1793
1794
1795
1796
1797
1798
1799
1800
1801
1802
1803
1804
1805
1806
1807
1808
1809
1810
1811
1812
1813
1814
1815
1816
1817
1818
1819
1820
1821
1822
1823
1824
1825
1826
1827
1828
1829
1830
1831
1832
1833
1834
1835
1836
1837
1838
1839
1840
1841
1842
1843
1844
1845
1846
1847
1848
1849
1850
1851
1852
1853
1854
1855
1856
1857
1858
1859
1860
1861
1862
1863
1864
1865
1866
1867
1868
1869
1870
1871
1872
1873
1874
1875
1876
1877
1878
1879
1880
1881
1882
1883
1884
1885
1886
1887
1888
1889
1890
1891
1892
1893
1894
1895
1896
1897
1898
1899
1900
1901
1902
1903
1904
1905
1906
1907
1908
1909
1910
1911
1912
1913
1914
1915
1916
1917
1918
1919
1920
1921
1922
1923
1924
1925
1926
1927
1928
1929
1930
1931
1932
1933
1934
1935
1936
1937
1938
1939
1940
1941
1942
1943
1944
1945
1946
1947
1948
1949
1950
1951
1952
1953
1954
1955
1956
1957
1958
1959
1960
1961
1962
1963
1964
1965
1966
1967
1968
1969
1970
1971
1972
1973
1974
1975
1976
1977
1978
1979
1980
1981
1982
1983
1984
1985
1986
1987
1988
1989
1990
1991
1992
1993
1994
1995
1996
1997
1998
1999
2000
2001
2002
2003
2004
2005
2006
2007
2008
2009
2010
2011
2012
2013
2014
2015
2016
2017
2018
2019
2020
2021
2022
2023
2024
2025
2026
2027
2028
2029
2030
2031
2032
2033
2034
2035
2036
2037
2038
2039
2040
2041
2042
2043
2044
2045
2046
2047
2048
2049
2050
2051
2052
2053
2054
2055
2056
2057
2058
2059
2060
2061
2062
2063
2064
2065
2066
2067
2068
2069
2070
2071
2072
2073
2074
2075
2076
2077
2078
2079
2080
2081
2082
2083
2084
2085
2086
2087
2088
2089
2090
2091
2092
2093
2094
2095
2096
2097
2098
2099
2100
2101
2102
2103
2104
2105
2106
2107
2108
2109
2110
2111
2112
2113
2114
2115
2116
2117
2118
2119
2120
2121
2122
2123
2124
2125
2126
2127
2128
2129
2130
2131
2132
2133
2134
2135
2136
2137
2138
2139
2140
2141
2142
2143
2144
2145
2146
2147
2148
2149
2150
2151
2152
2153
2154
2155
2156
2157
2158
2159
2160
2161
2162
2163
2164
2165
2166
2167
2168
2169
2170
2171
2172
2173
2174
2175
2176
2177
2178
2179
2180
2181
2182
2183
2184
2185
2186
2187
2188
2189
2190
2191
2192
2193
2194
2195
2196
2197
2198
2199
2200
2201
2202
2203
2204
2205
2206
2207
2208
2209
2210
2211
2212
2213
2214
2215
2216
2217
2218
2219
2220
2221
2222
2223
2224
2225
2226
2227
2228
2229
2230
2231
2232
2233
2234
2235
2236
2237
2238
2239
2240
2241
2242
2243
2244
2245
2246
2247
2248
2249
2250
2251
2252
2253
2254
2255
2256
2257
2258
2259
2260
2261
2262
2263
2264
2265
2266
2267
2268
2269
2270
2271
2272
2273
2274
2275
2276
2277
2278
2279
2280
2281
2282
2283
2284
2285
2286
2287
2288
2289
2290
2291
2292
2293
2294
2295
2296
2297
2298
2299
2300
2301
2302
2303
2304
2305
2306
2307
2308
2309
2310
2311
2312
2313
2314
2315
2316
2317
2318
2319
2320
2321
2322
2323
2324
2325
2326
2327
2328
2329
2330
2331
2332
2333
2334
2335
2336
2337
2338
2339
2340
2341
2342
2343
2344
2345
2346
2347
2348
2349
2350
2351
2352
2353
2354
2355
2356
2357
2358
2359
2360
2361
2362
2363
2364
2365
2366
2367
2368
2369
2370
2371
2372
2373
2374
2375
2376
2377
2378
2379
2380
2381
2382
2383
2384
2385
2386
2387
2388
2389
2390
2391
2392
2393
2394
2395
2396
2397
2398
2399
2400
2401
2402
2403
2404
2405
2406
2407
2408
2409
2410
2411
2412
2413
2414
2415
2416
2417
2418
2419
2420
2421
2422
2423
2424
2425
2426
2427
2428
2429
2430
2431
2432
2433
2434
2435
2436
2437
2438
2439
2440
2441
2442
2443
2444
2445
2446
2447
2448
2449
2450
2451
2452
2453
2454
2455
2456
2457
2458
2459
2460
2461
2462
2463
2464
2465
2466
2467
2468
2469
2470
2471
2472
2473
2474
2475
2476
2477
2478
2479
2480
2481
2482
2483
2484
2485
2486
2487
2488
2489
2490
2491
2492
2493
2494
2495
2496
2497
2498
2499
2500
2501
2502
2503
2504
2505
2506
2507
2508
2509
2510
2511
2512
2513
2514
2515
2516
2517
2518
2519
2520
2521
2522
2523
2524
2525
2526
2527
2528
2529
2530
2531
2532
2533
2534
2535
2536
2537
2538
2539
2540
2541
2542
2543
2544
2545
2546
2547
2548
2549
2550
2551
2552
2553
2554
2555
2556
2557
2558
2559
2560
2561
2562
2563
2564
2565
2566
2567
2568
2569
2570
2571
2572
2573
2574
2575
2576
2577
2578
2579
2580
2581
2582
2583
2584
2585
2586
2587
2588
2589
2590
2591
2592
2593
2594
2595
2596
2597
2598
2599
2600
2601
2602
2603
2604
2605
2606
2607
2608
2609
2610
2611
2612
2613
2614
2615
2616
2617
2618
2619
2620
2621
2622
2623
2624
2625
2626
2627
2628
2629
2630
2631
2632
2633
2634
2635
2636
2637
2638
2639
2640
2641
2642
2643
2644
2645
2646
2647
2648
2649
2650
2651
2652
2653
2654
2655
2656
2657
2658
2659
2660
2661
2662
2663
2664
2665
2666
2667
2668
2669
2670
2671
2672
2673
2674
2675
2676
2677
2678
2679
2680
2681
2682
2683
2684
2685
2686
2687
2688
2689
2690
2691
2692
2693
2694
2695
2696
2697
2698
2699
2700
2701
2702
2703
2704
2705
2706
2707
2708
2709
2710
2711
2712
2713
2714
2715
2716
2717
2718
2719
2720
2721
2722
2723
2724
2725
2726
2727
2728
2729
2730
2731
2732
2733
2734
2735
2736
2737
2738
2739
2740
2741
2742
2743
2744
2745
2746
2747
2748
2749
2750
2751
2752
2753
2754
2755
2756
2757
2758
2759
2760
2761
2762
2763
2764
2765
2766
2767
2768
2769
2770
2771
2772
2773
2774
2775
2776
2777
2778
2779
2780
2781
2782
2783
2784
2785
2786
2787
2788
2789
2790
2791
2792
2793
2794
2795
2796
2797
2798
2799
2800
2801
2802
2803
2804
2805
2806
2807
2808
2809
2810
2811
2812
2813
2814
2815
2816
2817
2818
2819
2820
2821
2822
2823
2824
2825
2826
2827
2828
2829
2830
2831
2832
2833
2834
2835
2836
2837
2838
2839
2840
2841
2842
2843
2844
2845
2846
2847
2848
2849
2850
2851
2852
2853
2854
2855
2856
2857
2858
2859
2860
2861
2862
2863
2864
2865
2866
2867
2868
2869
2870
2871
2872
2873
2874
2875
2876
2877
2878
2879
2880
2881
2882
2883
2884
2885
2886
2887
2888
2889
2890
2891
2892
2893
2894
2895
2896
2897
2898
2899
2900
2901
2902
2903
2904
2905
2906
2907
2908
2909
2910
2911
2912
2913
2914
2915
2916
2917
2918
2919
2920
2921
2922
2923
2924
2925
2926
2927
2928
2929
2930
2931
2932
2933
2934
2935
2936
2937
2938
2939
2940
2941
2942
2943
2944
2945
2946
2947
2948
2949
2950
2951
2952
2953
2954
2955
2956
2957
2958
2959
2960
2961
2962
2963
2964
2965
2966
2967
2968
2969
2970
2971
2972
2973
2974
2975
2976
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017 Raoul Bonnal <ilpuccio.febo@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu packages cran)
  #:use-module ((guix licenses) #:prefix license:)
  #:use-module (guix packages)
  #:use-module (guix download)
  #:use-module (guix utils)
  #:use-module (guix build-system r)
  #:use-module (gnu packages gcc)
  #:use-module (gnu packages machine-learning)
  #:use-module (gnu packages maths)
  #:use-module (gnu packages mpi)
  #:use-module (gnu packages perl)
  #:use-module (gnu packages statistics)
  #:use-module (gnu packages web))

(define-public r-ape
  (package
    (name "r-ape")
    (version "5.0")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "ape" version))
       (sha256
        (base32
         "0q59pmxawz498cb9mv5m49lhiwxib8ak94yyydz7qg8b6lpd4bn3"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-lattice" ,r-lattice)
       ("r-nlme" ,r-nlme)
       ("r-rcpp" ,r-rcpp)))
    (home-page "http://ape-package.ird.fr/")
    (synopsis "Analyses of phylogenetics and evolution")
    (description
     "This package provides functions for reading, writing, plotting, and
manipulating phylogenetic trees, analyses of comparative data in a
phylogenetic framework, ancestral character analyses, analyses of
diversification and macroevolution, computing distances from DNA sequences,
and several other tools.")
    (license license:gpl2+)))

(define-public r-colorspace
  (package
    (name "r-colorspace")
    (version "1.3-2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "colorspace" version))
       (sha256
        (base32 "0d1ya7hx4y58n5ivwmdmq2zgh0g2sbv7ykh13n85c1355csd57yx"))))
    (build-system r-build-system)
    (home-page "https://cran.r-project.org/web/packages/colorspace")
    (synopsis "Color space manipulation")
    (description
     "This package carries out a mapping between assorted color spaces
including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB and polar
CIELAB.  Qualitative, sequential, and diverging color palettes based on HCL
colors are provided.")
    (license license:bsd-3)))

(define-public r-glue
  (package
    (name "r-glue")
    (version "1.2.0")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "glue" version))
       (sha256
        (base32
         "0vi9y8ix95g6hjqdz9c9y4119apbdjcypdv0ag8cl6vaxqs5n9qr"))))
    (build-system r-build-system)
    (home-page "https://github.com/tidyverse/glue")
    (synopsis "Interpreted string literals")
    (description
     "This package provides an implementation of interpreted string literals,
inspired by Python's Literal String Interpolation (PEP-0498) and
Docstrings (PEP-0257) and Julia's Triple-Quoted String Literals.")
    (license license:expat)))

(define-public r-plogr
  (package
    (name "r-plogr")
    (version "0.1-1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "plogr" version))
       (sha256
        (base32
         "13zliqlbkl8b04k9ga0sx5jsh7k867gracgl84l2a9kcqy9mqx92"))))
    (build-system r-build-system)
    (home-page "https://github.com/krlmlr/plogr")
    (synopsis "R bindings for the plog C++ logging library")
    (description
     "This package provides the header files for a stripped-down version of
the plog header-only C++ logging library, and a method to log to R's standard
error stream.")
    (license license:expat)))

(define-public r-rcpp
  (package
    (name "r-rcpp")
    (version "0.12.15")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "Rcpp" version))
       (sha256
        (base32 "1pnv6sl4vdn69ygmgrb1b3gsigfdcfb56wnzikic93l8gkvdsvxv"))))
    (build-system r-build-system)
    (home-page "http://www.rcpp.org")
    (synopsis "Seamless R and C++ integration")
    (description
     "The Rcpp package provides R functions as well as C++ classes which offer
a seamless integration of R and C++.  Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries.  Documentation
about Rcpp is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel
and Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see
'citation(\"Rcpp\")' for details on these last two.")
    (license license:gpl2+)))

(define-public r-bindr
  (package
    (name "r-bindr")
    (version "0.1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "bindr" version))
       (sha256
        (base32
         "0d95ifm0x4mrfzi20xf39f5pzd7rfzqsld0vjqf6xzga5rhnd8fc"))))
    (build-system r-build-system)
    (home-page "https://github.com/krlmlr/bindr")
    (synopsis "Parametrized active bindings")
    (description
     "This package provides a simple interface for creating active bindings
where the bound function accepts additional arguments.")
    (license license:expat)))

(define-public r-bindrcpp
  (package
    (name "r-bindrcpp")
    (version "0.2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "bindrcpp" version))
       (sha256
        (base32
         "0l1l22zl87wiyl79m3gj2vlxmkhxvrkl4alhyy08h55q7hqs3vyh"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-bindr" ,r-bindr)
       ("r-plogr" ,r-plogr)
       ("r-rcpp" ,r-rcpp)))
    (home-page "https://github.com/krlmlr/bindrcpp")
    (synopsis "Rcpp interface to active bindings")
    (description
     "This package provides an easy way to fill an environment with active
bindings that call a C++ function.")
    (license license:expat)))

(define-public r-auc
  (package
    (name "r-auc")
    (version "0.3.0")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "AUC" version))
       (sha256
        (base32
         "0ripcib2qz0m7rgr1kiz68nx8f6p408l1ww7j78ljqik7p3g41g7"))))
    (properties `((upstream-name . "AUC")))
    (build-system r-build-system)
    (home-page "https://cran.r-project.org/web/packages/AUC")
    (synopsis "Compute the area under the curve of selected measures")
    (description
     "This package includes functions to compute the area under the curve of
selected measures: the area under the sensitivity curve (AUSEC), the area
under the specificity curve (AUSPC), the area under the accuracy
curve (AUACC), and the area under the receiver operating characteristic
curve (AUROC).  The curves can also be visualized.  Support for partial areas
is provided.")
    (license license:gpl2+)))

(define-public r-calibrate
  (package
    (name "r-calibrate")
    (version "1.7.2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "calibrate" version))
       (sha256
        (base32
         "010nb1nb9y7zhw2k6d2i2drwy5brp7b83mjj2w7i3wjp9xb6l1kq"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-mass" ,r-mass)))
    (home-page "https://cran.r-project.org/web/packages/calibrate")
    (synopsis "Calibration of scatterplot and biplot axes")
    (description
     "This is a package for drawing calibrated scales with tick marks
on (non-orthogonal) variable vectors in scatterplots and biplots.")
    (license license:gpl2)))

(define-public r-shape
  (package
    (name "r-shape")
    (version "1.4.4")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "shape" version))
       (sha256
        (base32
         "0hadk3mapkhbh8xjkiz52vxdagmmgvm15xwpzb90ikw4giyipjzl"))))
    (build-system r-build-system)
    (home-page "https://cran.r-project.org/web/packages/shape")
    (synopsis "Functions for plotting graphical shapes")
    (description
     "This package provides functions for plotting graphical shapes such as
ellipses, circles, cylinders, arrows, ...")
    (license license:gpl3+)))

(define-public r-globaloptions
  (package
    (name "r-globaloptions")
    (version "0.0.12")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "GlobalOptions" version))
       (sha256
        (base32
         "1abpc03cfvazbwj2sx6qgngs5pgpzysvxkana20hyvb4n7ws77f0"))))
    (properties `((upstream-name . "GlobalOptions")))
    (build-system r-build-system)
    (home-page "https://github.com/jokergoo/GlobalOptions")
    (synopsis "Generate functions to get or set global options")
    (description
     "This package provides more controls on the option values such as
validation and filtering on the values, making options invisible or private.")
    (license license:gpl2+)))

(define-public r-circlize
  (package
    (name "r-circlize")
    (version "0.4.3")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "circlize" version))
       (sha256
        (base32
         "0pg947gkryygikfbv6admx8gsg02b6g219j6a1sdnqij2908yxna"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-colorspace" ,r-colorspace)
       ("r-globaloptions" ,r-globaloptions)
       ("r-shape" ,r-shape)))
    (home-page "https://github.com/jokergoo/circlize")
    (synopsis "Circular visualization")
    (description
     "Circular layout is an efficient way to visualise huge amounts of
information.  This package provides an implementation of circular layout
generation in R as well as an enhancement of available software.  Its
flexibility is based on the usage of low-level graphics functions such that
self-defined high-level graphics can be easily implemented by users for
specific purposes.  Together with the seamless connection between the powerful
computational and visual environment in R, it gives users more convenience and
freedom to design figures for better understanding complex patterns behind
multi-dimensional data.")
    (license license:gpl2+)))

(define-public r-powerlaw
  (package
    (name "r-powerlaw")
    (version "0.70.1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "poweRlaw" version))
       (sha256
        (base32
         "04sr0nhdd1v915m0zf5gasznzgi08ykcy20kkwdw0l5mvvdbic8m"))))
    (properties `((upstream-name . "poweRlaw")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-vgam" ,r-vgam)))
    (home-page "https://github.com/csgillespie/poweRlaw")
    (synopsis "Tools for the analysis of heavy tailed distributions")
    (description
     "This package provides an implementation of maximum likelihood estimators
for a variety of heavy tailed distributions, including both the discrete and
continuous power law distributions.  Additionally, a goodness-of-fit based
approach is used to estimate the lower cut-off for the scaling region.")
    ;; Any of these GPL versions.
    (license (list license:gpl2 license:gpl3))))

(define-public r-compare
  (package
    (name "r-compare")
    (version "0.2-6")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "compare" version))
       (sha256
        (base32
         "0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"))))
    (build-system r-build-system)
    (home-page "https://cran.r-project.org/web/packages/compare")
    (synopsis "Comparing objects for differences")
    (description
     "This package provides functions to compare a model object to a
comparison object.  If the objects are not identical, the functions can be
instructed to explore various modifications of the objects (e.g., sorting
rows, dropping names) to see if the modified versions are identical.")
    (license license:gpl2+)))

(define-public r-dendextend
  (package
    (name "r-dendextend")
    (version "1.7.0")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "dendextend" version))
       (sha256
        (base32
         "1krvqadnnh53xx5ql7bwzxaif6a317jzbs1m00gnc6jnj03rfl5d"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-fpc" ,r-fpc)
       ("r-ggplot2" ,r-ggplot2)
       ("r-magrittr" ,r-magrittr)
       ("r-viridis" ,r-viridis)
       ("r-whisker" ,r-whisker)))
    (home-page "https://cran.r-project.org/web/packages/dendextend")
    (synopsis "Extending 'dendrogram' functionality in R")
    (description
     "This package offers a set of functions for extending @code{dendrogram}
objects in R, letting you visualize and compare trees of hierarchical
clusterings.  You can adjust a tree's graphical parameters (the color, size,
type, etc of its branches, nodes and labels) and visually and statistically
compare different dendrograms to one another.")
    ;; Any of these versions
    (license (list license:gpl2 license:gpl3))))

(define-public r-getoptlong
  (package
    (name "r-getoptlong")
    (version "0.1.6")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "GetoptLong" version))
       (sha256
        (base32
         "1d98gcvlvp9nz5lbnzr0kkpc2hbkx74hlhrnybqhg1gdwc3g09pm"))))
    (properties `((upstream-name . "GetoptLong")))
    (build-system r-build-system)
    (inputs
     `(("perl" ,perl)))
    (propagated-inputs
     `(("r-globaloptions" ,r-globaloptions)
       ("r-rjson" ,r-rjson)))
    (home-page "https://github.com/jokergoo/GetoptLong")
    (synopsis "Parsing command-line arguments and variable interpolation")
    (description
     "This is yet another command-line argument parser which wraps the
powerful Perl module @code{Getopt::Long} and with some adaptation for easier
use in R.  It also provides a simple way for variable interpolation in R.")
    (license license:gpl2+)))

(define-public r-fastmatch
  (package
    (name "r-fastmatch")
    (version "1.1-0")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "fastmatch" version))
       (sha256
        (base32
         "0z80jxkygmzn11sq0c2iz357s9bpki548lg926g85gldhfj1md90"))))
    (build-system r-build-system)
    (home-page "http://www.rforge.net/fastmatch")
    (synopsis "Fast match function")
    (description
     "This package provides a fast @code{match} replacement for cases that
require repeated look-ups.  It is slightly faster that R's built-in
@code{match} function on first match against a table, but extremely fast on
any subsequent lookup as it keeps the hash table in memory.")
    (license license:gpl2)))

(define-public r-ff
  (package
    (name "r-ff")
    (version "2.2-13")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "ff" version))
       (sha256
        (base32
         "1nvd6kx46xzyc99a44mgynd94pvd2h495m5a7b1g67k5w2phiywb"))))
    (build-system r-build-system)
    (propagated-inputs `(("r-bit" ,r-bit)))
    (home-page "http://ff.r-forge.r-project.org/")
    (synopsis "Memory-efficient storage of large data on disk and access functions")
    (description
     "This package provides data structures that are stored on disk but
behave (almost) as if they were in RAM by transparently mapping only a section
in main memory.")
    ;; error Architecture not supported.
    (supported-systems (delete "aarch64-linux" %supported-systems))
    (license license:gpl2)))

(define-public r-ffbase
  (package
    (name "r-ffbase")
    (version "0.12.3")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "ffbase" version))
       (sha256
        (base32
         "1nz97bndxxkzp8rq6va8ff5ky9vkaib1jybm6j852awwb3n9had5"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-bit" ,r-bit)
       ("r-fastmatch" ,r-fastmatch)
       ("r-ff" ,r-ff)))
    (home-page "http://github.com/edwindj/ffbase")
    (synopsis "Basic statistical functions for package 'ff'")
    (description
     "This package extends the out of memory vectors of @code{ff} with
statistical functions and other utilities to ease their usage.")
    (license license:gpl3)))

(define-public r-prettyunits
  (package
    (name "r-prettyunits")
    (version "1.0.2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "prettyunits" version))
       (sha256
        (base32
         "0p3z42hnk53x7ky4d1dr2brf7p8gv3agxr71i99m01n2hq2ri91m"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-assertthat" ,r-assertthat)
       ("r-magrittr" ,r-magrittr)))
    (home-page "https://github.com/gaborcsardi/prettyunits")
    (synopsis "Pretty, human readable formatting of quantities")
    (description
     "This package provides tools for pretty, human readable formatting of
quantities.")
    (license license:expat)))

(define-public r-reshape
  (package
    (name "r-reshape")
    (version "0.8.7")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "reshape" version))
       (sha256
        (base32
         "14ir3w4bb3bsz8jsak27nj7kpn227pdgr9653gjq5wc93rywi9ig"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-plyr" ,r-plyr)
       ("r-rcpp" ,r-rcpp)))
    (home-page "http://had.co.nz/reshape")
    (synopsis "Flexibly reshape data")
    (description
     "Flexibly restructure and aggregate data using just two functions:
@code{melt} and @code{cast}.  This package provides them.")
    (license license:expat)))

(define-public r-progress
  (package
    (name "r-progress")
    (version "1.1.2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "progress" version))
       (sha256
        (base32
         "1fxakchfjr5vj59s9sxynd7crpz97xj42438rmkhkf3rjpyspx59"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-prettyunits" ,r-prettyunits)
       ("r-r6" ,r-r6)))
    (home-page "https://github.com/gaborcsardi/progress")
    (synopsis "Terminal progress bars")
    (description
     "This package provides configurable progress bars.  They may include
percentage, elapsed time, and/or the estimated completion time.  They work in
terminals, in Emacs ESS, RStudio, Windows Rgui, and the macOS R.app.  The
package also provides a C++ API, that works with or without Rcpp.")
    (license license:expat)))

(define-public r-ggally
  (package
    (name "r-ggally")
    (version "1.3.2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "GGally" version))
       (sha256
        (base32
         "02px7j28wzbhcgcwm2m0pxb6g7s5zvphl64ix55pkvag4m2ky57l"))))
    (properties `((upstream-name . "GGally")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-ggplot2" ,r-ggplot2)
       ("r-gtable" ,r-gtable)
       ("r-plyr" ,r-plyr)
       ("r-progress" ,r-progress)
       ("r-rcolorbrewer" ,r-rcolorbrewer)
       ("r-reshape" ,r-reshape)))
    (home-page "https://ggobi.github.io/ggally")
    (synopsis "Extension to ggplot2")
    (description
     "The R package ggplot2 is a plotting system based on the grammar of
graphics.  GGally extends ggplot2 by adding several functions to reduce the
complexity of combining geometric objects with transformed data.  Some of
these functions include a pairwise plot matrix, a two group pairwise plot
matrix, a parallel coordinates plot, a survival plot, and several functions to
plot networks.")
    (license license:gpl2+)))

(define-public r-proxy
  (package
    (name "r-proxy")
    (version "0.4-21")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "proxy" version))
       (sha256
        (base32
         "1vih8gsfzv97h5c8ixd1qjnn02i7fzla2p9fdj2wpisqhx0p0xv0"))))
    (build-system r-build-system)
    (home-page "https://cran.r-project.org/web/packages/proxy")
    (synopsis "Distance and similarity measures")
    (description
     "This package provides an extensible framework for the efficient
calculation of auto- and cross-proximities, along with implementations of the
most popular ones.")
    (license license:gpl2)))

(define-public r-sp
  (package
    (name "r-sp")
    (version "1.2-7")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "sp" version))
       (sha256
        (base32
         "0q04yfgyjannsrzl0ppwcv0simrxrrbx2iz5mzaafc5x38zf0q3d"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-lattice" ,r-lattice)))
    (home-page "https://cran.r-project.org/web/packages/sp")
    (synopsis "Classes and methods for spatial data")
    (description
     "This package provides classes and methods for spatial data; the classes
document where the spatial location information resides, for 2D or 3D data.
Utility functions are provided, e.g. for plotting data as maps, spatial
selection, as well as methods for retrieving coordinates, for subsetting,
print, summary, etc.")
    (license license:gpl2+)))

(define-public r-rmtstat
  (package
    (name "r-rmtstat")
    (version "0.3")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "RMTstat" version))
       (sha256
        (base32
         "1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1"))))
    (properties `((upstream-name . "RMTstat")))
    (build-system r-build-system)
    (home-page "https://cran.r-project.org/web/packages/RMTstat")
    (synopsis "Distributions, statistics and tests derived from random matrix theory")
    (description
     "This package provides functions for working with the Tracy-Widom laws
and other distributions related to the eigenvalues of large Wishart
matrices.")
    (license license:bsd-3)))

(define-public r-rmpi
  (package
    (name "r-rmpi")
    (version "0.6-6")
    (source (origin
              (method url-fetch)
              (uri (cran-uri "Rmpi" version))
              (sha256
               (base32
                "0fm6z049aaq2c9xagm8n64d9560hg9d8hyb0m359fii672nhkz6q"))))
    (properties `((upstream-name . "Rmpi")))
    (build-system r-build-system)
    (arguments
     `(#:configure-flags '("--configure-args=\"--with-Rmpi-type=OPENMPI\"")))
    (inputs
     `(("openmpi" ,openmpi)))
    (home-page "http://www.stats.uwo.ca/faculty/yu/Rmpi")
    (synopsis "R interface to message-passing interface (MPI)")
    (description
     "This package provides an interface (wrapper) to MPI APIs.  It also
provides an interactive R manager and worker environment.")
    (license license:gpl2+)))

(define-public r-lmoments
  (package
    (name "r-lmoments")
    (version "1.2-3")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "Lmoments" version))
       (sha256
        (base32
         "13p0r4w16jvjnyjmkhkp3dwdfr1gap2l0k4k5jy41m8nc5fvcx79"))))
    (properties `((upstream-name . "Lmoments")))
    (build-system r-build-system)
    (home-page "http://www.tilastotiede.fi/juha_karvanen.html")
    (synopsis "L-moments and quantile mixtures")
    (description
     "This package contains functions to estimate L-moments and trimmed
L-moments from the data.  It also contains functions to estimate the
parameters of the normal polynomial quantile mixture and the Cauchy polynomial
quantile mixture from L-moments and trimmed L-moments.")
    (license license:gpl2)))

(define-public r-distillery
  (package
    (name "r-distillery")
    (version "1.0-4")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "distillery" version))
       (sha256
        (base32
         "1m0pgmlvk7bsb6q3kxagnq422babk61sf73naavac68v8x2q8fix"))))
    (build-system r-build-system)
    (home-page "http://www.ral.ucar.edu/staff/ericg")
    (synopsis "Functions for confidence intervals and object information")
    (description
     "This package provides some very simple method functions for confidence
interval calculation and to distill pertinent information from a potentially
complex object; primarily used in common with the packages extRemes and
SpatialVx.")
    (license license:gpl2+)))

(define-public r-extremes
  (package
    (name "r-extremes")
    (version "2.0-8")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "extRemes" version))
       (sha256
        (base32
         "0pnpib3g2r9x8hfqhvq23j8m3jh62lp28ipnqir5yadnzv850gfm"))))
    (properties `((upstream-name . "extRemes")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-car" ,r-car)
       ("r-distillery" ,r-distillery)
       ("r-lmoments" ,r-lmoments)))
    (home-page "http://www.assessment.ucar.edu/toolkit/")
    (synopsis "Extreme value analysis")
    (description
     "ExtRemes is a suite of functions for carrying out analyses on the
extreme values of a process of interest; be they block maxima over long blocks
or excesses over a high threshold.")
    (license license:gpl2+)))

(define-public r-lmtest
  (package
    (name "r-lmtest")
    (version "0.9-35")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "lmtest" version))
       (sha256
        (base32
         "107br1l7p52wxvazs031f4h5ryply97qywg9dzrkw4ydnvqq4j9g"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-zoo" ,r-zoo)))
    (native-inputs
     `(("gfortran" ,gfortran)))
    (home-page "https://cran.r-project.org/web/packages/lmtest")
    (synopsis "Testing linear regression models")
    (description
     "This package provides a collection of tests, data sets, and examples for
diagnostic checking in linear regression models.  Furthermore, some generic
tools for inference in parametric models are provided.")
    ;; Either version is okay
    (license (list license:gpl2 license:gpl3))))

(define-public r-inline
  (package
    (name "r-inline")
    (version "0.3.14")
    (source (origin
              (method url-fetch)
              (uri (cran-uri "inline" version))
              (sha256
               (base32
                "0cf9vya9h4znwgp6s1nayqqmh6mwyw7jl0isk1nx4j2ijszxcd7x"))))
    (build-system r-build-system)
    (home-page "https://cran.r-project.org/web/packages/inline")
    (synopsis "Functions to inline C, C++, Fortran function calls from R")
    (description
     "This package provides functionality to dynamically define R functions
and S4 methods with inlined C, C++ or Fortran code supporting @code{.C} and
@code{.Call} calling conventions.")
    ;; Any version of the LGPL.
    (license license:lgpl3+)))

(define-public r-bbmle
  (package
    (name "r-bbmle")
    (version "1.0.20")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "bbmle" version))
       (sha256
        (base32
         "1xzij7swrrzl5ly8l3lw6awh486zcm00251dwqws1y23fbgyh3vc"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-lattice" ,r-lattice)
       ("r-mass" ,r-mass)
       ("r-numderiv" ,r-numderiv)))
    (home-page "https://cran.r-project.org/web/packages/bbmle")
    (synopsis "Tools for General Maximum Likelihood Estimation")
    (description
     "This package provides methods and functions for fitting maximum
likelihood models in R.  This package modifies and extends the @code{mle}
classes in the @code{stats4} package.")
    ;; Any version of the GPL
    (license license:gpl2+)))

(define-public r-emdbook
  (package
    (name "r-emdbook")
    (version "1.3.9")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "emdbook" version))
       (sha256
        (base32
         "09xbdyw8a4pvrsg3ryr8drby0njy4avc5wsjj4ffibdaicpchy69"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-bbmle" ,r-bbmle)
       ("r-coda" ,r-coda)
       ("r-lattice" ,r-lattice)
       ("r-mass" ,r-mass)
       ("r-plyr" ,r-plyr)
       ("r-rcpp" ,r-rcpp)))
    (home-page "http://www.math.mcmaster.ca/bolker/emdbook")
    (synopsis "Support functions and data for \"Ecological Models and Data\"")
    (description
     "This package provides auxiliary functions and data sets for \"Ecological
Models and Data\", a book presenting maximum likelihood estimation and related
topics for ecologists (ISBN 978-0-691-12522-0).")
    ;; Any GPL version
    (license (list license:gpl2 license:gpl3))))

(define-public r-lpsolve
  (package
    (name "r-lpsolve")
    (version "5.6.13")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "lpSolve" version))
       (sha256
        (base32
         "13a9ry8xf5j1f2j6imqrxdgxqz3nqp9sj9b4ivyx9sid459irm6m"))))
    (properties `((upstream-name . "lpSolve")))
    (build-system r-build-system)
    (home-page "https://cran.r-project.org/web/packages/lpSolve")
    (synopsis "R interface to Lp_solve to solve linear/integer programs")
    (description
     "Lp_solve is software for solving linear, integer and mixed integer
programs.  This implementation supplies a \"wrapper\" function in C and some R
functions that solve general linear/integer problems, assignment problems, and
transportation problems.")
    (license license:lgpl2.0)))

(define-public r-limsolve
  (package
    (name "r-limsolve")
    (version "1.5.5.3")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "limSolve" version))
       (sha256
        (base32
         "1ll6ir42h3g2fzf0wqai213bm82gpwjj2hfma2np3mz024sc09rg"))))
    (properties `((upstream-name . "limSolve")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-lpsolve" ,r-lpsolve)
       ("r-mass" ,r-mass)
       ("r-quadprog" ,r-quadprog)))
    (native-inputs `(("gfortran" ,gfortran)))
    (home-page "https://cran.r-project.org/web/packages/limSolve")
    (synopsis "Solving linear inverse models")
    (description
     "This package provides functions that:

@enumerate
@item find the minimum/maximum of a linear or quadratic function,
@item sample an underdetermined or overdetermined system,
@item solve a linear system Ax=B for the unknown x.
@end enumerate

It includes banded and tridiagonal linear systems.  The package calls Fortran
functions from LINPACK.")
    ;; Any GPL version.
    (license (list license:gpl2+ license:gpl3+))))

(define-public r-fitdistrplus
  (package
    (name "r-fitdistrplus")
    (version "1.0-9")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "fitdistrplus" version))
       (sha256
        (base32
         "18x9454g598d54763k3hvi33iszifk7sxvhd1zg5r8z1vpixx3z6"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-mass" ,r-mass)
       ("r-survival" ,r-survival)))
    (home-page "http://riskassessment.r-forge.r-project.org")
    (synopsis "Fitting a parametric distribution from data")
    (description
     "This package extends the @code{fitdistr} function of the MASS package
with several functions to help the fit of a parametric distribution to
non-censored or censored data.  Censored data may contain left-censored,
right-censored and interval-censored values, with several lower and upper
bounds.  In addition to @dfn{maximum likelihood estimation} (MLE), the package
provides moment matching (MME), quantile matching (QME) and maximum
goodness-of-fit estimation (MGE) methods (available only for non-censored
data).  Weighted versions of MLE, MME and QME are available.")
    (license license:gpl2+)))

(define-public r-energy
  (package
    (name "r-energy")
    (version "1.7-2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "energy" version))
       (sha256
        (base32
         "19c7bgjnm4ggf7w5mk64c5shkma3sa9wc8x117iqv7pk1bvvyy3p"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-boot" ,r-boot)
       ("r-rcpp" ,r-rcpp)))
    (home-page "https://cran.r-project.org/web/packages/energy")
    (synopsis "Multivariate inference via the energy of data")
    (description
     "This package provides e-statistics (energy) tests and statistics for
multivariate and univariate inference, including distance correlation,
one-sample, two-sample, and multi-sample tests for comparing multivariate
distributions, are implemented.  Measuring and testing multivariate
independence based on distance correlation, partial distance correlation,
multivariate goodness-of-fit tests, clustering based on energy distance,
testing for multivariate normality, distance components (disco) for
non-parametric analysis of structured data, and other energy
statistics/methods are implemented.")
    (license license:gpl2+)))

(define-public r-suppdists
  (package
    (name "r-suppdists")
    (version "1.1-9.4")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "SuppDists" version))
       (sha256
        (base32
         "1ffx8wigqqvz2pnh06jjc0fnf4vq9z2rhwk2y3f9aszn18ap3dgw"))))
    (properties `((upstream-name . "SuppDists")))
    (build-system r-build-system)
    (home-page "https://cran.r-project.org/web/packages/SuppDists")
    (synopsis "Supplementary distributions")
    (description
     "This package provides ten distributions supplementing those built into
R.  Inverse Gauss, Kruskal-Wallis, Kendall's Tau, Friedman's chi squared,
Spearman's rho, maximum F ratio, the Pearson product moment correlation
coefficient, Johnson distributions, normal scores and generalized
hypergeometric distributions.  In addition two random number generators of
George Marsaglia are included.")
    (license license:gpl2+)))

(define-public r-ksamples
  (package
    (name "r-ksamples")
    (version "1.2-7")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "kSamples" version))
       (sha256
        (base32
         "0f19rjngk0lg6s8c6h5l55qpxp8sl4vxj3kpi05cizzncny9b9bj"))))
    (properties `((upstream-name . "kSamples")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-suppdists" ,r-suppdists)))
    (home-page "https://cran.r-project.org/web/packages/kSamples")
    (synopsis "K-Sample rank tests and their combinations")
    (description
     "This package provides tools to compares k samples using the
Anderson-Darling test, Kruskal-Wallis type tests with different rank score
criteria, Steel's multiple comparison test, and the Jonckheere-Terpstra (JT)
test.  It computes asymptotic, simulated or (limited) exact P-values, all
valid under randomization, with or without ties, or conditionally under random
sampling from populations, given the observed tie pattern.  Except for Steel's
test and the JT test it also combines these tests across several blocks of
samples.")
    (license license:gpl2+)))

(define-public r-cvst
  (package
    (name "r-cvst")
    (version "0.2-1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "CVST" version))
       (sha256
        (base32
         "17xacyi8cf37rr2xswx96qy7pwkaqq394awdlswykz3qlyzx4zx2"))))
    (properties `((upstream-name . "CVST")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-kernlab" ,r-kernlab)
       ("r-matrix" ,r-matrix)))
    (home-page "https://cran.r-project.org/web/packages/CVST")
    (synopsis "Fast cross-validation via sequential testing")
    (description
     "This package implements the fast cross-validation via sequential
testing (CVST) procedure.  CVST is an improved cross-validation procedure
which uses non-parametric testing coupled with sequential analysis to
determine the best parameter set on linearly increasing subsets of the data.
Additionally to the CVST the package contains an implementation of the
ordinary k-fold cross-validation with a flexible and powerful set of helper
objects and methods to handle the overall model selection process.  The
implementations of the Cochran's Q test with permutations and the sequential
testing framework of Wald are generic and can therefore also be used in other
contexts.")
    (license license:gpl2+)))

(define-public r-squarem
  (package
    (name "r-squarem")
    (version "2017.10-1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "SQUAREM" version))
       (sha256
        (base32
         "10xj26x7qjyvzndnbjl5krr9wabnb9cbrnp3m7xg673g8ddr12cv"))))
    (properties `((upstream-name . "SQUAREM")))
    (build-system r-build-system)
    (home-page "http://www.jhsph.edu/agingandhealth/People/Faculty_personal_pages/Varadhan.html")
    (synopsis "Squared Extrapolation Methods for Accelerating EM-Like Monotone Algorithms")
    (description
     "This package provides algorithms for accelerating the convergence of
slow, monotone sequences from smooth, contraction mapping such as the EM
algorithm.  It can be used to accelerate any smooth, linearly convergent
acceleration scheme.  A tutorial style introduction to this package is
available in a vignette.")
    (license license:gpl2+)))

(define-public r-lava
  (package
    (name "r-lava")
    (version "1.6")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "lava" version))
       (sha256
        (base32
         "02xf5d968raz9gnq5ywy04wz29xpdyca1hm79vbbg1mcxvzdl1dz"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-numderiv" ,r-numderiv)
       ("r-squarem" ,r-squarem)
       ("r-survival" ,r-survival)))
    (home-page "https://github.com/kkholst/lava")
    (synopsis "Latent variable models")
    (description
     "This package provides tools for the estimation and simulation of latent
variable models.")
    (license license:gpl3)))

(define-public r-drr
  (package
    (name "r-drr")
    (version "0.0.3")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "DRR" version))
       (sha256
        (base32
         "1yd1fvllfkcrwg9v322n4wkk4q4q84nvy58y4vac9pdr3yf3i4vl"))))
    (properties `((upstream-name . "DRR")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-cvst" ,r-cvst)
       ("r-kernlab" ,r-kernlab)
       ("r-matrix" ,r-matrix)))
    (home-page "https://cran.r-project.org/web/packages/DRR")
    (synopsis "Dimensionality reduction via regression")
    (description
     "This package provides an implementation of dimensionality reduction via
regression using Kernel Ridge Regression.")
    (license license:gpl3)))

(define-public r-prodlim
  (package
    (name "r-prodlim")
    (version "1.6.1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "prodlim" version))
       (sha256
        (base32
         "0m51rkivx1zr6whdqwj66jpnkmp4385m06kkha3dp8qqf4jna9iz"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-kernsmooth" ,r-kernsmooth)
       ("r-lava" ,r-lava)
       ("r-rcpp" ,r-rcpp)
       ("r-survival" ,r-survival)))
    (home-page "https://cran.r-project.org/web/packages/prodlim")
    (synopsis "Product-limit estimation for censored event history analysis")
    (description
     "This package provides a fast and user-friendly implementation of
nonparametric estimators for censored event history (survival) analysis with
the Kaplan-Meier and Aalen-Johansen methods.")
    (license license:gpl2+)))

(define-public r-dimred
  (package
    (name "r-dimred")
    (version "0.1.0")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "dimRed" version))
       (sha256
        (base32
         "0fasca5fsbrxdwv30hch7vb9snb844l7l8p5fjf239dq45xfy37v"))))
    (properties `((upstream-name . "dimRed")))
    (build-system r-build-system)
    (propagated-inputs `(("r-drr" ,r-drr)))
    (home-page "https://github.com/gdkrmr/dimRed")
    (synopsis "Framework for dimensionality reduction")
    (description
     "This package provides a collection of dimensionality reduction
techniques from R packages and provides a common interface for calling the
methods.")
    (license license:gpl3)))

(define-public r-timedate
  (package
    (name "r-timedate")
    (version "3043.102")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "timeDate" version))
       (sha256
        (base32
         "0wvl5pq261rvbgly7vilk3x3m9xk3ly6il1i5scwdf6srl1vlz1p"))))
    (properties `((upstream-name . "timeDate")))
    (build-system r-build-system)
    (home-page "https://www.rmetrics.org")
    (synopsis "Chronological and calendar objects")
    (description
     "This package provides an environment for teaching \"Financial
Engineering and Computational Finance\" and for managing chronological and
calendar objects.")
    (license license:gpl2+)))

(define-public r-ddalpha
  (package
    (name "r-ddalpha")
    (version "1.3.1.1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "ddalpha" version))
       (sha256
        (base32
         "13w8ir5rd80rka4mq343zd4wn93vfw870lzfqrd3cxgwb1bwcw7y"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-bh" ,r-bh)
       ("r-class" ,r-class)
       ("r-mass" ,r-mass)
       ("r-rcpp" ,r-rcpp)
       ("r-robustbase" ,r-robustbase)
       ("r-sfsmisc" ,r-sfsmisc)))
    (native-inputs
     `(("gfortran" ,gfortran)))
    (home-page "https://cran.r-project.org/web/packages/ddalpha")
    (synopsis "Depth-Based classification and calculation of data depth")
    (description
     "This package contains procedures for depth-based supervised learning,
which are entirely non-parametric, in particular the DDalpha-procedure (Lange,
Mosler and Mozharovskyi, 2014).  The training data sample is transformed by a
statistical depth function to a compact low-dimensional space, where the final
classification is done.  It also offers an extension to functional data and
routines for calculating certain notions of statistical depth functions.  50
multivariate and 5 functional classification problems are included.")
    (license license:gpl2)))

(define-public r-gower
  (package
    (name "r-gower")
    (version "0.1.2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "gower" version))
       (sha256
        (base32
         "1mbrj1lam3jfbby2j32shmmj5cn09zx3rkxbamq7q8sdg39b54gb"))))
    (build-system r-build-system)
    (native-inputs
     `(("r-knitr" ,r-knitr)))
    (home-page "https://github.com/markvanderloo/gower")
    (synopsis "Gower's distance")
    (description
     "This package provides tools to compute Gower's distance (or similarity)
coefficient between records, and to compute the top-n matches between records.
Core algorithms are executed in parallel on systems supporting OpenMP.")
    (license license:gpl3)))

(define-public r-rcpproll
  (package
    (name "r-rcpproll")
    (version "0.2.2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "RcppRoll" version))
       (sha256
        (base32
         "19xzvxym8zbighndygkq4imfwc0abh4hqyq3qrr8aakyd096iisi"))))
    (properties `((upstream-name . "RcppRoll")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-rcpp" ,r-rcpp)))
    (home-page "https://cran.r-project.org/web/packages/RcppRoll")
    (synopsis "Efficient rolling and windowed operations")
    (description
     "This package provides fast and efficient routines for common rolling /
windowed operations.  Routines for the efficient computation of windowed mean,
median, sum, product, minimum, maximum, standard deviation and variance are
provided.")
    (license license:gpl2+)))

(define-public r-ipred
  (package
    (name "r-ipred")
    (version "0.9-6")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "ipred" version))
       (sha256
        (base32
         "1vrw1pqcpnc04x1r2h9grdfm6bivs358sww5gg90jwlvxcw69lxq"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-class" ,r-class)
       ("r-mass" ,r-mass)
       ("r-nnet" ,r-nnet)
       ("r-prodlim" ,r-prodlim)
       ("r-rpart" ,r-rpart)
       ("r-survival" ,r-survival)))
    (home-page "https://cran.r-project.org/web/packages/ipred")
    (synopsis "Improved predictors")
    (description
     "This package provides improved predictive models by indirect
classification and bagging for classification, regression and survival
problems as well as resampling based estimators of prediction error.")
    (license license:gpl2+)))

(define-public r-psych
  (package
    (name "r-psych")
    (version "1.7.8")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "psych" version))
       (sha256
        (base32
         "0daismb8pdk392vdy304hqx0m3jx62gx3a0hygjygc125rhfla7k"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-foreign" ,r-foreign)
       ("r-lattice" ,r-lattice)
       ("r-mnormt" ,r-mnormt)
       ("r-nlme" ,r-nlme)))
    (home-page "https://cran.r-project.org/web/packages/psych/")
    (synopsis "Procedures for psychological, psychometric, and personality research")
    (description
     "This package provides a general purpose toolbox for personality,
psychometric theory and experimental psychology.  Functions are primarily for
multivariate analysis and scale construction using factor analysis, principal
component analysis, cluster analysis and reliability analysis, although others
provide basic descriptive statistics.  Item Response Theory is done using
factor analysis of tetrachoric and polychoric correlations.  Functions for
analyzing data at multiple levels include within and between group statistics,
including correlations and factor analysis.  Functions for simulating and
testing particular item and test structures are included.  Several functions
serve as a useful front end for structural equation modeling.  Graphical
displays of path diagrams, factor analysis and structural equation models are
created using basic graphics.")
    (license license:gpl2+)))

(define-public r-broom
  (package
    (name "r-broom")
    (version "0.4.3")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "broom" version))
       (sha256
        (base32
         "119pc2jnxvm13cvd77c7d14p3bn68f4jm310vj3yfck40101n9if"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-dplyr" ,r-dplyr)
       ("r-nlme" ,r-nlme)
       ("r-plyr" ,r-plyr)
       ("r-psych" ,r-psych)
       ("r-reshape2" ,r-reshape2)
       ("r-stringr" ,r-stringr)
       ("r-tidyr" ,r-tidyr)))
    (home-page "http://github.com/tidyverse/broom")
    (synopsis "Convert statistical analysis objects into tidy data frames")
    (description
     "This package provides tools to convert statistical analysis objects from
R into tidy data frames, so that they can more easily be combined, reshaped
and otherwise processed with tools like @code{dplyr}, @code{tidyr} and
@code{ggplot2}.  The package provides three S3 generics: @code{tidy}, which
summarizes a model's statistical findings such as coefficients of a
regression; @code{augment}, which adds columns to the original data such as
predictions, residuals and cluster assignments; and @code{glance}, which
provides a one-row summary of model-level statistics.")
    (license license:expat)))

(define-public r-recipes
  (package
    (name "r-recipes")
    (version "0.1.2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "recipes" version))
       (sha256
        (base32
         "1car3a3mqn87pz049cbgkaayz86970mvkapk6al2k7jjw76306l9"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-broom" ,r-broom)
       ("r-ddalpha" ,r-ddalpha)
       ("r-dimred" ,r-dimred)
       ("r-dplyr" ,r-dplyr)
       ("r-gower" ,r-gower)
       ("r-ipred" ,r-ipred)
       ("r-lubridate" ,r-lubridate)
       ("r-magrittr" ,r-magrittr)
       ("r-matrix" ,r-matrix)
       ("r-purrr" ,r-purrr)
       ("r-rcpproll" ,r-rcpproll)
       ("r-rlang" ,r-rlang)
       ("r-tibble" ,r-tibble)
       ("r-tidyselect" ,r-tidyselect)
       ("r-timedate" ,r-timedate)))
    (home-page "https://github.com/topepo/recipes")
    (synopsis "Preprocessing tools to create design matrices")
    (description
     "Recipes is an extensible framework to create and preprocess design
matrices.  Recipes consist of one or more data manipulation and analysis
\"steps\".  Statistical parameters for the steps can be estimated from an
initial data set and then applied to other data sets.  The resulting design
matrices can then be used as inputs into statistical or machine learning
models.")
    (license license:gpl2)))

(define-public r-pdist
  (package
    (name "r-pdist")
    (version "1.2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "pdist" version))
       (sha256
        (base32
         "18nd3mgad11f2zmwcp0w3sxlch4a9y6wp8dfdyzvjn7y4b4bq0dd"))))
    (build-system r-build-system)
    (home-page "https://github.com/jeffwong/pdist")
    (synopsis "Partitioned distance function")
    (description
     "Pdist computes the euclidean distance between rows of a matrix X and
rows of another matrix Y.  Previously, this could be done by binding the two
matrices together and calling @code{dist}, but this creates unnecessary
computation by computing the distances between a row of X and another row of
X, and likewise for Y.  Pdist strictly computes distances across the two
matrices, not within the same matrix, making computations significantly faster
for certain use cases.")
    (license license:gpl3+)))

(define-public r-ggrepel
  (package
    (name "r-ggrepel")
    (version "0.7.0")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "ggrepel" version))
       (sha256
        (base32
         "0g0qfm6g71rv27423c1x846ipilnj213knyzrcr09vrpxc87l618"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-ggplot2" ,r-ggplot2)
       ("r-rcpp" ,r-rcpp)
       ("r-scales" ,r-scales)))
    (home-page "http://github.com/slowkow/ggrepel")
    (synopsis "Repulsive text and label geometries for ggplot2")
    (description
     "This package provides text and label geometries for ggplot2 that help to
avoid overlapping text labels.  Labels repel away from each other and away
from the data points.")
    (license license:gpl3)))

(define-public r-corrplot
  (package
    (name "r-corrplot")
    (version "0.84")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "corrplot" version))
       (sha256
        (base32
         "1k03qd8db7pwg1v318xapx5mpiypiz2n07qr19c4b45diri5xkhd"))))
    (build-system r-build-system)
    (home-page "https://github.com/taiyun/corrplot")
    (synopsis "Visualization of a correlation matrix")
    (description
     "This package provides a graphical display of a correlation matrix or
general matrix.  It also contains some algorithms to do matrix reordering.  In
addition, corrplot is good at details, including choosing color, text labels,
color labels, layout, etc.")
    ;; Any version of the GPL
    (license license:gpl2+)))

(define-public r-stringdist
  (package
    (name "r-stringdist")
    (version "0.9.4.6")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "stringdist" version))
       (sha256
        (base32
         "0j5b7hr53nr9xq44famkpwzi4khix93ffani5pwldqkf8bpdvhci"))))
    (build-system r-build-system)
    (home-page "https://github.com/markvanderloo/stringdist")
    (synopsis "Approximate string matching and string distance functions")
    (description
     "This package implements an approximate string matching version of R's
native @code{match} function.  It can calculate various string distances based
on edits (Damerau-Levenshtein, Hamming, Levenshtein, optimal sting alignment),
qgrams (q- gram, cosine, jaccard distance) or heuristic metrics (Jaro,
Jaro-Winkler).  An implementation of soundex is provided as well.  Distances
can be computed between character vectors while taking proper care of encoding
or between integer vectors representing generic sequences.")
    (license license:gpl3+)))

(define-public r-mice
  (package
    (name "r-mice")
    (version "2.46.0")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "mice" version))
       (sha256
        (base32
         "1gjvlk67zvgipfczsca8zqk97vg3sivv82hblsdwp14s7smhjcax"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-lattice" ,r-lattice)
       ("r-mass" ,r-mass)
       ("r-nnet" ,r-nnet)
       ("r-rcpp" ,r-rcpp)
       ("r-rpart" ,r-rpart)
       ("r-survival" ,r-survival)))
    (home-page "https://cran.r-project.org/web/packages/mice/")
    (synopsis "Multivariate imputation by chained equations")
    (description
     "Multiple imputation using @dfn{Fully Conditional Specification} (FCS)
implemented by the MICE algorithm as described in @url{Van Buuren and
Groothuis-Oudshoorn (2011), http://doi.org/10.18637/jss.v045.i03}.  Each
variable has its own imputation model.  Built-in imputation models are
provided for continuous data (predictive mean matching, normal), binary
data (logistic regression), unordered categorical data (polytomous logistic
regression) and ordered categorical data (proportional odds).  MICE can also
impute continuous two-level data (normal model, pan, second-level variables).
Passive imputation can be used to maintain consistency between variables.
Various diagnostic plots are available to inspect the quality of the
imputations.")
    ;; Any of these two versions.
    (license (list license:gpl2 license:gpl3))))

(define-public r-truncnorm
  (package
    (name "r-truncnorm")
    (version "1.0-8")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "truncnorm" version))
       (sha256
        (base32
         "0zn88wdd58223kibk085rhsikl4yhlrwiyq109hzjg06hy6lwmj9"))))
    (build-system r-build-system)
    (home-page "https://cran.r-project.org/web/packages/truncnorm/")
    (synopsis "Truncated normal distribution")
    (description "This package provides functions for the truncated normal
distribution with mean equal to @code{mean} and standard deviation equal to
@code{sd}.  It includes density, distribution, quantile, and expected value
functions, as well as a random generation function.")
    (license license:gpl2)))

(define-public r-rsolnp
  (package
    (name "r-rsolnp")
    (version "1.16")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "Rsolnp" version))
       (sha256
        (base32
         "0w7nkj6igr0gi7r7jg950lsx7dj6aipgxi6vbjsf5f5yc9h7fhii"))))
    (properties `((upstream-name . "Rsolnp")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-truncnorm" ,r-truncnorm)))
    (home-page "https://cran.r-project.org/web/packages/Rsolnp/")
    (synopsis "General non-linear optimization")
    (description "The Rsolnp package implements a general non-linear augmented
Lagrange multiplier method solver, a @dfn{sequential quadratic
programming} (SQP) based solver).")
    ;; Any version of the GPL.
    (license license:gpl2+)))

(define-public r-hardyweinberg
  (package
    (name "r-hardyweinberg")
    (version "1.5.9")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "HardyWeinberg" version))
       (sha256
        (base32
         "0qk3lly5qczn61rj0q9xzscppspvk238yjgr4p71pkzkjhiv40jz"))))
    (properties `((upstream-name . "HardyWeinberg")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-mice" ,r-mice)
       ("r-rcpp" ,r-rcpp)
       ("r-rsolnp" ,r-rsolnp)))
    (home-page "https://cran.r-project.org/package=HardyWeinberg")
    (synopsis "Statistical tests and graphics for Hardy-Weinberg equilibrium")
    (description
     "This package contains tools for exploring Hardy-Weinberg equilibrium for
diallelic genetic marker data.  All classical tests (chi-square, exact,
likelihood-ratio and permutation tests) for Hardy-Weinberg equilibrium are
included in the package, as well as functions for power computation and for
the simulation of marker data under equilibrium and disequilibrium.  Routines
for dealing with markers on the X-chromosome are included.  Functions for
testing equilibrium in the presence of missing data by using multiple
imputation are also provided.  Implements several graphics for exploring the
equilibrium status of a large set of diallelic markers: ternary plots with
acceptance regions, log-ratio plots and Q-Q plots.")
    (license license:gpl2+)))

(define-public r-sm
  (package
    (name "r-sm")
    (version "2.2-5.4")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "sm" version))
       (sha256
        (base32
         "0hnq5s2fv94gaj0nyqc1vjdjd64vsp9z23nqa8hxvjcaf996rwj9"))))
    (build-system r-build-system)
    (native-inputs `(("gfortran" ,gfortran)))
    (home-page "http://www.stats.gla.ac.uk/~adrian/sm/")
    (synopsis "Smoothing methods for nonparametric regression and density estimation")
    (description
     "This is software accompanying the book 'Applied Smoothing Techniques for
Data Analysis---The Kernel Approach with S-Plus Illustrations', Oxford
University Press.  It provides smoothing methods for nonparametric regression
and density estimation")
    (license license:gpl2+)))

(define-public r-vioplot
  (package
    (name "r-vioplot")
    (version "0.2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "vioplot" version))
       (sha256
        (base32
         "16wkb26kv6qr34hv5zgqmgq6zzgysg9i78pvy2c097lr60v087v0"))))
    (build-system r-build-system)
    (propagated-inputs `(("r-sm" ,r-sm)))
    (home-page "http://wsopuppenkiste.wiso.uni-goettingen.de/~dadler")
    (synopsis "Violin plot")
    (description
     "This package provides a violin plot, which is a combination of a box
plot and a kernel density plot.")
    (license license:bsd-3)))

(define-public r-rsofia
  (package
    (name "r-rsofia")
    (version "1.1")
    (source (origin
              (method url-fetch)
              ;; This package has been removed from CRAN, so we can
              ;; only fetch it from the archives.
              (uri (string-append "https://cran.r-project.org/src/"
                                  "contrib/Archive/RSofia/RSofia_"
                                  version ".tar.gz"))
              (sha256
               (base32
                "0q931y9rcf6slb0s2lsxhgqrzy4yqwh8hb1124nxg0bjbxvjbihn"))))
    (properties `((upstream-name . "RSofia")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-rcpp" ,r-rcpp)))
    (home-page "https://cran.r-project.org/src/contrib/Archive/RSofia")
    (synopsis "Port of sofia-ml to R")
    (description "This package is a port of sofia-ml to R.  Sofia-ml is a
suite of fast incremental algorithms for machine learning that can be used for
training models for classification or ranking.")
    (license license:asl2.0)))

(define-public r-xts
  (package
    (name "r-xts")
    (version "0.10-1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "xts" version))
       (sha256
        (base32
         "1j9ddh9v9081zrqlpylsk13fldilhjdyaw6r6pa726fhgnrsf8a2"))))
    (build-system r-build-system)
    (propagated-inputs `(("r-zoo" ,r-zoo)))
    (native-inputs `(("gfortran" ,gfortran)))
    (home-page "https://github.com/joshuaulrich/xts")
    (synopsis "Extensible time series")
    (description
     "This package provides for uniform handling of R's different time-based
data classes by extending @code{zoo}, maximizing native format information
preservation and allowing for user-level customization and extension, while
simplifying cross-class interoperability.")
    (license license:gpl2+)))

(define-public r-performanceanalytics
  (package
    (name "r-performanceanalytics")
    (version "1.5.2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "PerformanceAnalytics" version))
       (sha256
        (base32
         "01bgm57z079g6r505w3bj293zkbd49fwa8sg55z87vizwavipml6"))))
    (properties
     `((upstream-name . "PerformanceAnalytics")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-quadprog" ,r-quadprog)
       ("r-xts" ,r-xts)
       ("r-zoo" ,r-zoo)))
    (home-page "http://r-forge.r-project.org/projects/returnanalytics/")
    (synopsis "Econometric tools for performance and risk analysis")
    (description "This is a collection of econometric functions for
performance and risk analysis.  This package aims to aid practitioners and
researchers in utilizing the latest research in analysis of non-normal return
streams.  In general, it is most tested on return (rather than price) data on
a regular scale, but most functions will work with irregular return data as
well, and increasing numbers of functions will work with P&L or price data
where possible.")
    ;; Either version may be picked.
    (license (list license:gpl2 license:gpl3))))

(define-public r-laeken
  (package
    (name "r-laeken")
    (version "0.4.6")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "laeken" version))
       (sha256
        (base32
         "1rhkv1kk508pwln1d325iq4fink2ncssps0ypxi52j9d7wk78la6"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-boot" ,r-boot)
       ("r-mass" ,r-mass)))
    (home-page "https://cran.r-project.org/web/packages/laeken/")
    (synopsis "Estimation of indicators on social exclusion and poverty")
    (description "This package provides tools for the estimation of indicators
on social exclusion and poverty, as well as an implementation of Pareto tail
modeling for empirical income distributions.")
    (license license:gpl2+)))

(define-public r-vcd
  (package
    (name "r-vcd")
    (version "1.4-4")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "vcd" version))
       (sha256
        (base32
         "1lp99h0wvsc61l1dgcqjxdrcgpgw88ak430cdsv43kmm43qssqd5"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-colorspace" ,r-colorspace)
       ("r-lmtest" ,r-lmtest)
       ("r-mass" ,r-mass)))
    (home-page "https://cran.r-project.org/web/packages/vcd/")
    (synopsis "Visualizing categorical data")
    (description "This package provides visualization techniques, data sets,
summary and inference procedures aimed particularly at categorical data.
Special emphasis is given to highly extensible grid graphics.  The package was
originally inspired by the book \"Visualizing Categorical Data\" by Michael
Friendly and is now the main support package for a new book, \"Discrete Data
Analysis with R\" by Michael Friendly and David Meyer (2015).")
    (license license:gpl2)))

(define-public r-ica
  (package
    (name "r-ica")
    (version "1.0-1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "ica" version))
       (sha256
        (base32
         "1bkl4a72l0k6gm82l3jxnib898z20cw17zg81jj39l9dn65rlmcq"))))
    (build-system r-build-system)
    (home-page "https://cran.r-project.org/web/packages/ica/")
    (synopsis "Independent component analysis")
    (description "This package provides tools for @dfn{Independent Component
Analysis} (ICA) using various algorithms: FastICA,
Information-Maximization (Infomax), and @dfn{Joint Approximate Diagonalization
of Eigenmatrices} (JADE).")
    (license license:gpl2+)))

(define-public r-dtw
  (package
    (name "r-dtw")
    (version "1.18-1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "dtw" version))
       (sha256
        (base32
         "1b91vahba09cqlb8b1ry4dlv4rbldb4s2p6w52gmyw31vxdv5nnr"))))
    (build-system r-build-system)
    (propagated-inputs `(("r-proxy" ,r-proxy)))
    (home-page "http://dtw.r-forge.r-project.org/")
    (synopsis "Dynamic Time Warping Algorithms")
    (description "This package provides a comprehensive implementation of
@dfn{dynamic time warping} (DTW) algorithms in R.  DTW computes the
optimal (least cumulative distance) alignment between points of two time
series.  Common DTW variants covered include local (slope) and global (window)
constraints, subsequence matches, arbitrary distance definitions,
normalizations, minimum variance matching, and so on.")
    (license license:gpl2+)))

(define-public r-sdmtools
  (package
    (name "r-sdmtools")
    (version "1.1-221")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "SDMTools" version))
       (sha256
        (base32
         "1kacrpamshv7wz83yn45sfbw4m9c44xrrngzcklnwx8gcxx2knm6"))))
    (properties `((upstream-name . "SDMTools")))
    (build-system r-build-system)
    (propagated-inputs `(("r-r-utils" ,r-r-utils)))
    (home-page "http://www.rforge.net/SDMTools/")
    (synopsis "Species distribution modelling tools")
    (description "This packages provides a set of tools for post processing
the outcomes of species distribution modeling exercises.  It includes novel
methods for comparing models and tracking changes in distributions through
time.  It further includes methods for visualizing outcomes, selecting
thresholds, calculating measures of accuracy and landscape fragmentation
statistics, etc.")
    (license license:gpl3+)))

(define-public r-scatterplot3d
  (package
    (name "r-scatterplot3d")
    (version "0.3-40")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "scatterplot3d" version))
       (sha256
        (base32
         "0ababcj87kx7860mica9y2ydlhskxmgj9n46crx036cila512jc2"))))
    (build-system r-build-system)
    (home-page "https://cran.r-project.org/web/packages/scatterplot3d/")
    (synopsis "3D scatter plot")
    (description "This package provides an implementation of scatter plots for
plotting.  a three dimensional point cloud.")
    (license license:gpl2)))

(define-public r-ggridges
  (package
    (name "r-ggridges")
    (version "0.4.1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "ggridges" version))
       (sha256
        (base32
         "0kfa3icqdalqdg1klxjrhfl7if35d3wnsiyl86bprw5dyqyh3lh3"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-ggplot2" ,r-ggplot2)
       ("r-plyr" ,r-plyr)
       ("r-scales" ,r-scales)))
    (home-page "https://github.com/clauswilke/ggridges")
    (synopsis "Ridgeline plots in ggplot2")
    (description
     "Ridgeline plots provide a convenient way of visualizing changes in
distributions over time or space.  This package enables the creation of such
plots in @code{ggplot2}.")
    (license license:gpl2)))

(define-public r-ggjoy
  (package
    (name "r-ggjoy")
    (version "0.4.0")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "ggjoy" version))
       (sha256
        (base32
         "1s24zn7gmk52bvjjhanxby7rxbnc2yfl0nx5nv7x7z0zja8gg7nb"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-ggplot2" ,r-ggplot2)
       ("r-ggridges" ,r-ggridges)))
    (home-page "https://github.com/clauswilke/ggjoy")
    (synopsis "Joyplots in ggplot2")
    (description "Joyplots provide a convenient way of visualizing changes in
distributions over time or space.  This package enables the creation of such
plots in @code{ggplot2}.")
    (license license:gpl2)))

(define-public r-cli
  (package
    (name "r-cli")
    (version "1.0.0")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "cli" version))
       (sha256
        (base32
         "07as3dr7vwx02p3qgzlmxz1dlrd3x3lysrzp222ip9jcjpydp8wg"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-assertthat" ,r-assertthat)
       ("r-crayon" ,r-crayon)))
    (home-page "https://github.com/r-lib/cli#readme")
    (synopsis "Helpers for developing command line interfaces")
    (description "This package provides a suite of tools designed to build
attractive command line interfaces (CLIs).  It includes tools for drawing
rules, boxes, trees, and Unicode symbols with ASCII alternatives.")
    (license license:expat)))

(define-public r-argparser
  (package
    (name "r-argparser")
    (version "0.4")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "argparser" version))
       (sha256
        (base32
         "0s1wxshx4jk69wfxhycx973q6y8cmqrfymyjklhq1i8xrj0kmmx9"))))
    (build-system r-build-system)
    (home-page "https://bitbucket.org/djhshih/argparser")
    (synopsis "Command-line argument parser")
    (description
     "This package provides a cross-platform command-line argument parser
written purely in R with no external dependencies.  It is useful with the
Rscript front-end and facilitates turning an R script into an executable
script.")
    (license license:gpl3+)))

(define-public r-debugme
  (package
    (name "r-debugme")
    (version "1.1.0")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "debugme" version))
       (sha256
        (base32
         "1c9sg55zvf10h8198jdnpamm6f66lzw3c3jnmdp9ls6na0j0xbjd"))))
    (build-system r-build-system)
    (propagated-inputs `(("r-crayon" ,r-crayon)))
    (home-page "https://github.com/r-lib/debugme#readme")
    (synopsis "Debug R packages")
    (description
     "This package allows the user to specify debug messages as special string
constants, and control debugging of packages via environment variables.")
    (license license:expat)))

(define-public r-processx
  (package
    (name "r-processx")
    (version "2.0.0.1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "processx" version))
       (sha256
        (base32
         "0yw23lp9xjvbpswzghkmjiayw7p19hbvmgv58k3i6b8g5nav4qcg"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-assertthat" ,r-assertthat)
       ("r-crayon" ,r-crayon)
       ("r-debugme" ,r-debugme)
       ("r-r6" ,r-r6)))
    (home-page "https://github.com/r-lib/processx3")
    (synopsis "Execute and control system processes")
    (description
     "This package provides portable tools to run system processes in the
background.  It can check if a background process is running; wait on a
background process to finish; get the exit status of finished processes; kill
background processes and their children; restart processes.  It can read the
standard output and error of the processes, using non-blocking connections.
@code{processx} can poll a process for standard output or error, with a
timeout.  It can also poll several processes at once.")
    (license license:expat)))

(define-public r-tsp
  (package
    (name "r-tsp")
    (version "1.1-5")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "TSP" version))
       (sha256
        (base32
         "03xxfr5kk4zhzpb1q1pwncdp0dhchm9b48wzhvvxn2dxf3mnby2w"))))
    (properties `((upstream-name . "TSP")))
    (build-system r-build-system)
    (propagated-inputs `(("r-foreach" ,r-foreach)))
    (home-page "https://cran.r-project.org/web/packages/TSP/")
    (synopsis "Traveling salesperson problem (TSP)")
    (description "This package provides basic infrastructure and some
algorithms for the @dfn{traveling salesperson problem}(TSP) (also known as the
traveling salesman problem).")
    (license license:gpl3)))

(define-public r-qap
  (package
    (name "r-qap")
    (version "0.1-1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "qap" version))
       (sha256
        (base32
         "0d2d1ni1camixyi45lfy00f4pn3p063k7bsi8gj5scp6n15mdgb0"))))
    (build-system r-build-system)
    (native-inputs `(("gfortran" ,gfortran)))
    (home-page "http://cran.r-project.org/web/packages/qap/")
    (synopsis "Heuristics for the quadratic assignment problem (QAP)")
    (description "This package implements heuristics for the @dfn{quadratic
assignment problem} (QAP).  Currently only a simulated annealing heuristic is
available.")
    (license license:gpl3)))

(define-public r-gclus
  (package
    (name "r-gclus")
    (version "1.3.1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "gclus" version))
       (sha256
        (base32
         "02ba6zj9bjwrzykamjp40ajynx9xjx9h2i85n0ym0r5lcki4x6fn"))))
    (build-system r-build-system)
    (propagated-inputs `(("r-cluster" ,r-cluster)))
    (home-page "http://cran.r-project.org/web/packages/gclus/")
    (synopsis "Clustering graphics")
    (description "This package orders panels in scatterplot matrices and
parallel coordinate displays by some merit index.  It contains various indices
of merit, ordering functions, and enhanced versions of @code{pairs} and
@code{parcoord} which color panels according to their merit level.")
    (license license:gpl2+)))

(define-public r-webshot
  (package
    (name "r-webshot")
    (version "0.5.0")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "webshot" version))
       (sha256
        (base32
         "07r71zzmggp4jf92x4ws4wg6v1x98vaj01lsar85bnb30n5vx8gh"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-jsonlite" ,r-jsonlite)
       ("r-magrittr" ,r-magrittr)
       ("r-processx" ,r-processx)
       ("r-withr" ,r-withr)))
    (home-page "https://github.com/wch/webshot/")
    (synopsis "Take screenshots of web pages")
    (description
     "Webshot makes it easy to take screenshots of web pages from within R.
It can also run Shiny applications locally and take screenshots of the
application; and it can render and screenshot static as well as interactive R
Markdown documents.")
    (license license:gpl2)))

(define-public r-seriation
  (package
    (name "r-seriation")
    (version "1.2-3")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "seriation" version))
       (sha256
        (base32
         "1q6hw4hjw224b4y0dc0j630v2pgj6sn455nwkilb70w8k31hpk92"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-cluster" ,r-cluster)
       ("r-colorspace" ,r-colorspace)
       ("r-dendextend" ,r-dendextend)
       ("r-gclus" ,r-gclus)
       ("r-gplots" ,r-gplots)
       ("r-mass" ,r-mass)
       ("r-qap" ,r-qap)
       ("r-registry" ,r-registry)
       ("r-tsp" ,r-tsp)))
    (native-inputs `(("gfortran" ,gfortran)))
    (home-page "http://s2.smu.edu/IDA/seriation/")
    (synopsis "Infrastructure for ordering objects using seriation")
    (description
     "This package provides infrastructure for seriation with an
implementation of several seriation/sequencing techniques to reorder matrices,
dissimilarity matrices, and dendrograms.  It also provides (optimally)
reordered heatmaps, color images and clustering visualizations like
dissimilarity plots, and visual assessment of cluster tendency plots (VAT and
iVAT).")
    (license license:gpl3)))

(define-public r-heatmaply
  (package
    (name "r-heatmaply")
    (version "0.14.1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "heatmaply" version))
       (sha256
        (base32
         "03p2caclhfgqgpx3wwck5h06jy3mxgs05gjmwkb7hmwghkjh41jc"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-assertthat" ,r-assertthat)
       ("r-colorspace" ,r-colorspace)
       ("r-dendextend" ,r-dendextend)
       ("r-ggplot2" ,r-ggplot2)
       ("r-gplots" ,r-gplots)
       ("r-htmlwidgets" ,r-htmlwidgets)
       ("r-magrittr" ,r-magrittr)
       ("r-plotly" ,r-plotly)
       ("r-rcolorbrewer" ,r-rcolorbrewer)
       ("r-reshape2" ,r-reshape2)
       ("r-scales" ,r-scales)
       ("r-seriation" ,r-seriation)
       ("r-viridis" ,r-viridis)
       ("r-webshot" ,r-webshot)))
    (home-page "https://cran.r-project.org/package=heatmaply")
    (synopsis "Interactive cluster heat maps using plotly")
    (description "Heatmaps are used in many fields for visualizing
observations, correlations, missing values patterns, and more.  Interactive
heatmaps allow the inspection of specific value by hovering the mouse over a
cell, as well as zooming into a region of the heatmap by dragging a rectangle
around the relevant area.  This work is based on the @code{ggplot2} and
@code{plotly.js} engine.  It produces similar heatmaps as @code{heatmap.2} or
@code{d3heatmap}, with the advantage of speed, the ability to zoom from the
dendrogram panes, and the placing of factor variables in the sides of the
heatmap.")
    (license (list license:gpl2 license:gpl3))))

(define-public r-xfun
  (package
    (name "r-xfun")
    (version "0.1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "xfun" version))
       (sha256
        (base32
         "1sm51gmwgw876d6d1q8smxmfgfh6zsnykfx8qp8z6jmh0fvd89pj"))))
    (build-system r-build-system)
    (home-page "https://github.com/yihui/xfun")
    (synopsis "Miscellaneous functions")
    (description
     "This package provides miscellaneous functions commonly used in other
packages maintained by Yihui Xie.")
    (license license:expat)))

(define-public r-utf8
  (package
    (name "r-utf8")
    (version "1.1.3")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "utf8" version))
       (sha256
        (base32
         "03s4j6059q0nly68vpk6wy3p3f5ypakw93fj35kzd82b4z1r9cs3"))))
    (build-system r-build-system)
    (home-page "https://github.com/patperry/r-utf8")
    (synopsis "Unicode text processing")
    (description
     "This package provides tools to process and print UTF-8 encoded
international text (Unicode).  Input, validate, normalize, encode, format, and
display.")
    (license license:asl2.0)))

(define-public r-pillar
  (package
    (name "r-pillar")
    (version "1.2.1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "pillar" version))
       (sha256
        (base32
         "1ryd7m570y6q3w71wd5dz042b3d0dv24g2rbkw1kdx0n6jj9gsbd"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-cli" ,r-cli)
       ("r-crayon" ,r-crayon)
       ("r-rlang" ,r-rlang)
       ("r-utf8" ,r-utf8)))
    (home-page "https://github.com/r-lib/pillar")
    (synopsis "Coloured formatting for columns")
    (description
     "This package provides a @code{pillar} generic designed for formatting
columns of data using the full range of colours provided by modern
terminals.")
    (license license:gpl3)))

(define-public r-uuid
  (package
    (name "r-uuid")
    (version "0.1-2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "uuid" version))
       (sha256
        (base32
         "1gmisd630fc8ybg845hbg13wmm3pk3npaamrh5wqbc1nqd6p0wfx"))))
    (build-system r-build-system)
    (home-page "http://www.rforge.net/uuid")
    (synopsis "Tools for generating and handling of UUIDs")
    (description
     "This package provides tools for generating and handling of
@dfn{Universally Unique Identifiers} (UUIDs).")
    (license license:expat)))

(define-public r-tinytex
  (package
    (name "r-tinytex")
    (version "0.3")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "tinytex" version))
       (sha256
        (base32
         "0mhxlr4709mca9jshnah5i7yjyy6k12s933619p7p9c8nbqj39cn"))))
    (build-system r-build-system)
    (home-page "https://github.com/yihui/tinytex")
    (synopsis "Helper functions for TeX Live and compiling LaTeX documents")
    (description
     "This package provides helper functions to install and maintain the LaTeX
distribution named TinyTeX, a lightweight, cross-platform, portable, and
easy-to-maintain version of TeX Live.  This package also contains helper
functions to compile LaTeX documents, and install missing LaTeX packages
automatically.")
    (license license:expat)))

(define-public r-metap
  (package
    (name "r-metap")
    (version "0.8")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "metap" version))
       (sha256
        (base32
         "06ny9zkilawdy0s8yiwhnygs3yppw89bbyf76zgdavykbzscz5lh"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-lattice" ,r-lattice)))
    (home-page "http://www.dewey.myzen.co.uk/meta/meta.html")
    (synopsis "Meta-analysis of significance values")
    (description
     "The canonical way to perform meta-analysis involves using effect sizes.
When they are not available this package provides a number of methods for
meta-analysis of significance values including the methods of Edgington,
Fisher, Stouffer, Tippett, and Wilkinson; a number of data-sets to replicate
published results; and a routine for graphical display.")
    (license license:gpl2)))

(define-public r-network
  (package
    (name "r-network")
    (version "1.13.0")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "network" version))
       (sha256
        (base32
         "11sg330xb7gcnl3f6lwhhjdabz6mk43828i2np635pqw4s4yl13s"))))
    (build-system r-build-system)
    (home-page "http://statnet.org/")
    (synopsis "Classes for relational data")
    (description
     "This package provides tools to create and modify network objects.  The
@code{network} class can represent a range of relational data types, and
supports arbitrary vertex/edge/graph attributes.")
    (license license:gpl2+)))

(define-public r-statnet-common
  (package
    (name "r-statnet-common")
    (version "4.0.0")
    (source
      (origin
        (method url-fetch)
        (uri (cran-uri "statnet.common" version))
        (sha256
          (base32
            "0yw6l5b4qv0jqlg4zyczas7m12a5pyqghs6ydxy2f6v6vxkijvi0"))))
    (properties
      `((upstream-name . "statnet.common")))
    (build-system r-build-system)
    (home-page "http://www.statnet.org")
    (synopsis "R scripts and utilities used by the Statnet software")
    (description "This package provides non-statistical utilities used by the
software developed by the Statnet Project.")
    (license license:gpl3)))

(define-public r-sna
  (package
    (name "r-sna")
    (version "2.4")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "sna" version))
       (sha256
        (base32
         "1ks8819qvpdfansfqj9p32s1rhvl26frvbi78m4rx1wd1qcv74i2"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-network" ,r-network)
       ("r-statnet-common" ,r-statnet-common)))
    (home-page "http://www.statnet.org")
    (synopsis "Tools for social network analysis")
    (description
     "This package provides a range of tools for social network analysis,
including node and graph-level indices, structural distance and covariance
methods, structural equivalence detection, network regression, random graph
generation, and 2D/3D network visualization.")
    (license license:gpl2+)))

(define-public r-ttr
  (package
    (name "r-ttr")
    (version "0.23-3")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "TTR" version))
       (sha256
        (base32
         "07r62ngyzjl4aszdxnr3n6bnbcgcap32yhd430jsilicg8n06di1"))))
    (properties `((upstream-name . "TTR")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-curl" ,r-curl)
       ("r-xts" ,r-xts)
       ("r-zoo" ,r-zoo)))
    (native-inputs `(("gfortran" ,gfortran)))
    (home-page "https://github.com/joshuaulrich/TTR")
    (synopsis "Technical trading rules")
    (description
     "This package provides functions and data to construct technical trading
rules with R.")
    (license license:gpl2)))

(define-public r-leaps
  (package
    (name "r-leaps")
    (version "3.0")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "leaps" version))
       (sha256
        (base32
         "11gjmn1azrjw5xlvdb4gknj9985kck9x8zb9np1rnk2smp6pka2m"))))
    (build-system r-build-system)
    (native-inputs `(("gfortran" ,gfortran)))
    (home-page "http://cran.r-project.org/web/packages/leaps/")
    (synopsis "Regression subset selection")
    (description
     "This package provides tools for regression subset selection, including
exhaustive search.")
    (license license:gpl2+)))

(define-public r-splus2r
  (package
    (name "r-splus2r")
    (version "1.2-2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "splus2R" version))
       (sha256
        (base32
         "0xrbj8vxy0pc6hl7m8abv71d3hjw47cl51s7j7priadyqczkq6sz"))))
    (properties `((upstream-name . "splus2R")))
    (build-system r-build-system)
    (native-inputs `(("gfortran" ,gfortran)))
    (home-page "http://cran.r-project.org/web/packages/splus2R/")
    (synopsis "Supplemental S-PLUS functionality in R")
    (description
     "Currently there are many functions in S-PLUS that are missing in R.  To
facilitate the conversion of S-PLUS packages to R packages, this package
provides some missing S-PLUS functionality in R.")
    (license license:gpl2)))

(define-public r-ifultools
  (package
    (name "r-ifultools")
    (version "2.0-4")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "ifultools" version))
       (sha256
        (base32
         "0pv2msaa1rmj8csxdclzi2jwg9pfdvh87blj9j3xa3myisglq092"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-mass" ,r-mass)
       ("r-splus2r" ,r-splus2r)))
    (home-page "http://cran.r-project.org/web/packages/ifultools/")
    (synopsis "Insightful research tools")
    (description "This package provides C code used by the wmtsa, fractal, and
sapa R packages.")
    (license license:gpl2)))

(define-public r-sapa
  (package
    (name "r-sapa")
    (version "2.0-2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "sapa" version))
       (sha256
        (base32
         "056xlh14dnzq4x7sbp7ff2k61jxy7110a742b502vz549qfrr5ds"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-ifultools" ,r-ifultools)
       ("r-splus2r" ,r-splus2r)))
    (home-page "http://cran.r-project.org/web/packages/sapa/")
    (synopsis "Spectral analysis for physical applications")
    (description "This package provides software for the book Spectral
Analysis for Physical Applications, Donald B. Percival and Andrew T. Walden,
Cambridge University Press, 1993.")
    (license license:gpl2)))

(define-public r-quantmod
  (package
    (name "r-quantmod")
    (version "0.4-12")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "quantmod" version))
       (sha256
        (base32
         "0y7gh0k1s10vdsfch8777avbhf99mc9crikvx7ahqrw0j631vmhq"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-curl" ,r-curl)
       ("r-ttr" ,r-ttr)
       ("r-xts" ,r-xts)
       ("r-zoo" ,r-zoo)))
    (home-page "http://cran.r-project.org/web/packages/quantmod/")
    (synopsis "Quantitative financial modelling framework")
    (description "This package provides a quantitative financial modelling
framework to allow users to specify, build, trade, and analyse quantitative
financial trading strategies.")
    (license license:gpl3)))

(define-public r-tseries
  (package
    (name "r-tseries")
    (version "0.10-43")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "tseries" version))
       (sha256
        (base32
         "1yjxhj7l1p2przczl6frggfcr5iwda9lbcsmh0y75gbbbps14yf2"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-quadprog" ,r-quadprog)
       ("r-quantmod" ,r-quantmod)
       ("r-zoo" ,r-zoo)))
    (native-inputs
     `(("gfortran" ,gfortran)))
    (home-page "http://cran.r-project.org/web/packages/tseries/")
    (synopsis "Time series analysis and computational finance")
    (description
     "This package provides functions relating to time series analysis and
computational finance.")
    (license license:gpl2)))

(define-public r-wmtsa
  (package
    (name "r-wmtsa")
    (version "2.0-3")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "wmtsa" version))
       (sha256
        (base32
         "1q436krz5p1f4a7a7sya6a9rh9x9mi8zzcgq66gbk9w9w4hcqcj6"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-ifultools" ,r-ifultools)
       ("r-mass" ,r-mass)
       ("r-splus2r" ,r-splus2r)))
    (home-page "http://cran.r-project.org/web/packages/wmtsa/")
    (synopsis "Wavelet methods for time series analysis")
    (description
     "This package provides software to accompany the book \"Wavelet Methods
for Time Series Analysis\", Donald B. Percival and Andrew T. Walden, Cambridge
University Press, 2000.")
    (license license:gpl2)))

(define-public r-tsa
  (package
    (name "r-tsa")
    (version "1.01")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "TSA" version))
       (sha256
        (base32
         "0cm97hwxm6vfgy9mc3kgwq6dnmn86p8a4avnfjbai048qnwrn6hx"))))
    (properties `((upstream-name . "TSA")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-leaps" ,r-leaps)
       ("r-locfit" ,r-locfit)
       ("r-mgcv" ,r-mgcv)
       ("r-tseries" ,r-tseries)))
    (home-page "http://www.stat.uiowa.edu/~kchan/TSA.htm")
    (synopsis "Time series analysis")
    (description
     "This package contains R functions and datasets detailed in the book
\"Time Series Analysis with Applications in R (second edition)\" by Jonathan
Cryer and Kung-Sik Chan.")
    (license license:gpl2+)))

(define-public r-extradistr
  (package
    (name "r-extradistr")
    (version "1.8.8")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "extraDistr" version))
       (sha256
        (base32
         "0ywn4qwnamv36l1hw27l9y5kh3v6ha5781wsv2bz6szqjgg7kdb3"))))
    (properties `((upstream-name . "extraDistr")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-rcpp" ,r-rcpp)))
    (home-page "https://github.com/twolodzko/extraDistr")
    (synopsis "Additional univariate and multivariate distributions")
    (description
     "This package implements density, distribution functions, quantile
functions and random generation functions for a large number of univariate and
multivariate distributions.")
    (license license:gpl2)))

(define-public r-fractal
  (package
    (name "r-fractal")
    (version "2.0-4")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "fractal" version))
       (sha256
        (base32
         "18lr9z0gslvfc3z8vyj3krqj3bfhg60zv1fzinrwwkc4cpk1w7mp"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-ifultools" ,r-ifultools)
       ("r-mass" ,r-mass)
       ("r-sapa" ,r-sapa)
       ("r-scatterplot3d" ,r-scatterplot3d)
       ("r-splus2r" ,r-splus2r)
       ("r-wmtsa" ,r-wmtsa)))
    (home-page "http://cran.r-project.org/web/packages/fractal/")
    (synopsis "Fractal time series modeling and analysis")
    (description
     "This package provides tools for stochastic fractal and deterministic
chaotic time series analysis.")
    (license license:gpl2)))

(define-public r-urca
  (package
    (name "r-urca")
    (version "1.3-0")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "urca" version))
       (sha256
        (base32
         "1akaqwf3fvvvx4sgfn641fd4sj51s0701pvfl6s5hnz2k0iwh732"))))
    (build-system r-build-system)
    (propagated-inputs `(("r-nlme" ,r-nlme)))
    (native-inputs `(("gfortran" ,gfortran)))
    (home-page "http://cran.r-project.org/web/packages/urca/")
    (synopsis "Unit root and cointegration tests for time series data")
    (description
     "This package provides unit root and cointegration tests encountered in
applied econometric analysis.")
    (license license:gpl2+)))

(define-public r-cubature
  (package
    (name "r-cubature")
    (version "1.3-11")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "cubature" version))
       (sha256
        (base32
         "06f6gsvbb732p80r6hxvzh4ik546icxfvx21dyh65ypmw3kgm64k"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-rcpp" ,r-rcpp)))
    (home-page "https://github.com/bnaras/cubature")
    (synopsis "Adaptive multivariate integration over hypercubes")
    (description
     "This package is an R wrapper around the cubature C library for adaptive
multivariate integration over hypercubes.  This version provides both
@code{hcubature} and @code{pcubature} routines in addition to a vector
interface.")
    ;; The included cubature C library is released under GPLv2+, but the
    ;; wrapper declares the license to be GPLv3+.
    (license (list license:gpl2+ license:gpl3+))))

(define-public r-trend
  (package
    (name "r-trend")
    (version "1.1.0")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "trend" version))
       (sha256
        (base32
         "06yifqbsvxbmk5gld4z2nnyhf59v8ks5xjwacmb25mv9r6bn388b"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-extradistr" ,r-extradistr)))
    (native-inputs
     `(("gfortran" ,gfortran)))
    (home-page "http://cran.r-project.org/web/packages/trend/")
    (synopsis "Non-parametric trend tests and change-point detection")
    (description
     "The analysis of environmental data often requires the detection of
trends and change-points.  This package includes tests for trend
detection (Cox-Stuart Trend Test, Mann-Kendall Trend Test, (correlated)
Hirsch-Slack Test, partial Mann-Kendall Trend Test, multivariate (multisite)
Mann-Kendall Trend Test, (Seasonal) Sen's slope, partial Pearson and Spearman
correlation trend test), change-point detection (Lanzante's test procedures,
Pettitt's test, Buishand Range Test, Buishand U Test, Standard Normal
Homogeinity Test), detection of non-randomness (Wallis-Moore Phase Frequency
Test, Bartels rank von Neumann's ratio test, Wald-Wolfowitz Test) and the two
sample Robust Rank-Order Distributional Test.")
    (license license:gpl3)))

(define-public r-expm
  (package
    (name "r-expm")
    (version "0.999-2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "expm" version))
       (sha256
        (base32
         "1mihl67kvv1xv0figp25jkmwfn4iwkcx15cng2348y8gm6zybw9q"))))
    (build-system r-build-system)
    (propagated-inputs `(("r-matrix" ,r-matrix)))
    (native-inputs `(("gfortran" ,gfortran)))
    (home-page "http://r-forge.r-project.org/projects/expm/")
    (synopsis "Tools for matrix exponentials and related quantities")
    (description
     "This package provides tools for the computation of the matrix
exponential, logarithm, square root, and related quantities.")
    (license license:gpl2+)))

(define-public r-complexplus
  (package
    (name "r-complexplus")
    (version "2.1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "complexplus" version))
       (sha256
        (base32
         "16w9v7d1ckavqmr86l34frr37pkvdn0iqnb17ssb8xaggns5lgqx"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-expm" ,r-expm)
       ("r-matrix" ,r-matrix)))
    (home-page "http://cran.r-project.org/web/packages/complexplus/")
    (synopsis "Functions of complex or real variables")
    (description
     "This package extends several functions to the complex domain, including
the matrix exponential and logarithm, and the determinant.")
    (license license:gpl2)))

(define-public r-phontools
  (package
    (name "r-phontools")
    (version "0.2-2.1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "phonTools" version))
       (sha256
        (base32
         "01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7"))))
    (properties `((upstream-name . "phonTools")))
    (build-system r-build-system)
    (home-page "http://www.santiagobarreda.com/rscripts.html")
    (synopsis "Tools for phonetic and acoustic analyses")
    (description
     "This package contains tools for the organization, display, and analysis
of the sorts of data frequently encountered in phonetics research and
experimentation, including the easy creation of IPA vowel plots, and the
creation and manipulation of WAVE audio files.")
    (license license:bsd-2)))

(define-public r-np
  (package
    (name "r-np")
    (version "0.60-6")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "np" version))
       (sha256
        (base32
         "1y72x5j9j9mcgcy2xizk31gl843hfkngxdn8s4qw7yhw2qj79hsr"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-boot" ,r-boot)
       ("r-cubature" ,r-cubature)
       ("r-quantreg" ,r-quantreg)))
    (home-page "https://github.com/JeffreyRacine/R-Package-np")
    (synopsis "Non-parametric kernel smoothing methods for mixed data types")
    (description "This package provides non-parametric (and semi-parametric)
kernel methods that seamlessly handle a mix of continuous, unordered, and
ordered factor data types.")
    ;; Any version of the GPL.
    (license license:gpl3+)))

(define-public r-powerplus
  (package
    (name "r-powerplus")
    (version "3.1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "powerplus" version))
       (sha256
        (base32
         "0ayp6x34hkzgris4j3zbbs0r23n81bhww3wgfyy630ri4sk6brrn"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-complexplus" ,r-complexplus)
       ("r-expm" ,r-expm)
       ("r-mass" ,r-mass)
       ("r-matrix" ,r-matrix)
       ("r-phontools" ,r-phontools)))
    (home-page "http://cran.r-project.org/web/packages/powerplus/")
    (synopsis "Exponentiation operations")
    (description
     "This package provides tools for the computation of matrix and scalar
exponentiation.")
    (license license:gpl2)))

(define-public r-heatmaply
  (package
    (name "r-heatmaply")
    (version "0.14.1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "heatmaply" version))
       (sha256
        (base32
         "03p2caclhfgqgpx3wwck5h06jy3mxgs05gjmwkb7hmwghkjh41jc"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-assertthat" ,r-assertthat)
       ("r-colorspace" ,r-colorspace)
       ("r-dendextend" ,r-dendextend)
       ("r-ggplot2" ,r-ggplot2)
       ("r-gplots" ,r-gplots)
       ("r-htmlwidgets" ,r-htmlwidgets)
       ("r-magrittr" ,r-magrittr)
       ("r-plotly" ,r-plotly)
       ("r-rcolorbrewer" ,r-rcolorbrewer)
       ("r-reshape2" ,r-reshape2)
       ("r-scales" ,r-scales)
       ("r-seriation" ,r-seriation)
       ("r-viridis" ,r-viridis)
       ("r-webshot" ,r-webshot)))
    (home-page "https://cran.r-project.org/package=heatmaply")
    (synopsis "Interactive cluster heat maps using plotly")
    (description
     "This package enables you to create interactive cluster heatmaps that can
be saved as a stand-alone HTML file, embedded in R Markdown documents or in a
Shiny app, and made available in the RStudio viewer pane.  Hover the mouse
pointer over a cell to show details or drag a rectangle to zoom.  A heatmap is
a popular graphical method for visualizing high-dimensional data, in which a
table of numbers is encoded as a grid of colored cells.  The rows and columns
of the matrix are ordered to highlight patterns and are often accompanied by
dendrograms.")
    ;; Either version of the license.
    (license (list license:gpl2 license:gpl3))))

(define-public r-cgdsr
  (package
    (name "r-cgdsr")
    (version "1.2.10")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "cgdsr" version))
       (sha256
        (base32
         "1xyhw7mhmjichr1l6f9y1qvfj9wm87kfbm87ji7lcwf36gxh5g23"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-r-methodss3" ,r-r-methodss3)
       ("r-r-oo" ,r-r-oo)))
    (home-page "https://github.com/cBioPortal/cgdsr")
    (synopsis "R-based API for accessing the MSKCC Cancer Genomics Data Server")
    (description
     "This package provides a basic set of R functions for querying the Cancer
Genomics Data Server (CGDS), hosted by the Computational Biology Center at
Memorial-Sloan-Kettering Cancer Center (MSKCC).")
    (license license:lgpl3)))

(define-public r-import
  (package
    (name "r-import")
    (version "1.1.0")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "import" version))
       (sha256
        (base32
         "0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji"))))
    (build-system r-build-system)
    (home-page "https://github.com/smbache/import")
    (synopsis "Import mechanism for R")
    (description
     "This is an alternative mechanism for importing objects from packages.
The syntax allows for importing multiple objects from a package with a single
command in an expressive way.  The import package bridges some of the gap
between using @code{library} (or @code{require}) and direct (single-object)
imports.  Furthermore the imported objects are not placed in the current
environment.  It is also possible to import objects from stand-alone @code{.R}
files.")
    (license license:expat)))

(define-public r-shinyace
  (package
    (name "r-shinyace")
    (version "0.2.1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "shinyAce" version))
       (sha256
        (base32
         "0ycka8rsw0178q9klfid97vdn5cbyx3r778nis5s3dqipdyazdm9"))))
    (properties `((upstream-name . "shinyAce")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-shiny" ,r-shiny)))
    (home-page "http://cran.r-project.org/web/packages/shinyAce")
    (synopsis "Ace editor bindings for Shiny")
    (description
     "This package provides Ace editor bindings to enable a rich text editing
environment within Shiny.")
    (license license:expat)))

(define-public r-radiant-data
  (package
    (name "r-radiant-data")
    (version "0.8.1")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "radiant.data" version))
       (sha256
        (base32
         "1ylina1jlrmvjkj8pwg0ip5jv1038vnzyckmf542xl7g11x8rvw1"))
       (modules '((guix build utils)))
       (snippet
        '(begin
           ;; Delete files that are under CC-NC-SA.
           (delete-file-recursively "inst/app/tools/help")
           #t))))
    (properties `((upstream-name . "radiant.data")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-base64enc" ,r-base64enc)
       ("r-broom" ,r-broom)
       ("r-car" ,r-car)
       ("r-curl" ,r-curl)
       ("r-dplyr" ,r-dplyr)
       ("r-dt" ,r-dt)
       ("r-ggplot2" ,r-ggplot2)
       ("r-gridextra" ,r-gridextra)
       ("r-import" ,r-import)
       ("r-jsonlite" ,r-jsonlite)
       ("r-knitr" ,r-knitr)
       ("r-lubridate" ,r-lubridate)
       ("r-magrittr" ,r-magrittr)
       ("r-markdown" ,r-markdown)
       ("r-pryr" ,r-pryr)
       ("r-psych" ,r-psych)
       ("r-readr" ,r-readr)
       ("r-rmarkdown" ,r-rmarkdown)
       ("r-rstudioapi" ,r-rstudioapi)
       ("r-scales" ,r-scales)
       ("r-shiny" ,r-shiny)
       ("r-shinyace" ,r-shinyace)
       ("r-tibble" ,r-tibble)
       ("r-tidyr" ,r-tidyr)))
    (home-page "https://github.com/radiant-rstats/radiant.data")
    (synopsis "Data menu for Radiant: business analytics using R and Shiny")
    (description
     "The Radiant Data menu includes interfaces for loading, saving, viewing,
visualizing, summarizing, transforming, and combining data.  It also contains
functionality to generate reproducible reports of the analyses conducted in
the application.")
    (license license:agpl3)))

(define-public r-algdesign
  (package
    (name "r-algdesign")
    (version "1.1-7.3")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "AlgDesign" version))
       (sha256
        (base32
         "0bl7mx4dnmkgs2x1fj7cqnrp7jx18mqwxyga0rzlniq12h8mc3fz"))))
    (properties `((upstream-name . "AlgDesign")))
    (build-system r-build-system)
    (home-page "https://github.com/jvbraun/AlgDesign")
    (synopsis "Algorithmic experimental design")
    (description
     "This package provides tools to calculate exact and approximate theory
experimental designs for D, A, and I criteria.  Very large designs may be
created.  Experimental designs may be blocked or blocked designs created from
a candidate list, using several criteria.  The blocking can be done when whole
and within plot factors interact.")
    (license license:gpl2+)))

(define-public r-signal
  (package
    (name "r-signal")
    (version "0.7-6")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "signal" version))
       (sha256
        (base32
         "1vsxramz5qd9q9s3vlqzmfdpmwl2rhlb2n904zw6f0fg0xxjfq3b"))))
    (build-system r-build-system)
    (propagated-inputs `(("r-mass" ,r-mass)))
    (native-inputs `(("gfortran" ,gfortran)))
    (home-page "http://cran.r-project.org/web/packages/signal/")
    (synopsis "Signal processing")
    (description
     "This package provides a set of signal processing functions originally
written for Matlab and GNU Octave.  It includes filter generation utilities,
filtering functions, resampling routines, and visualization of filter models.
It also includes interpolation functions.")
    (license license:gpl2)))