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authorLeo Famulari <leo@famulari.name>2016-11-25 11:20:21 -0500
committerLeo Famulari <leo@famulari.name>2016-11-25 11:20:21 -0500
commitde32aa74b4f7762e887e80047804c42d495ab841 (patch)
treebc37856ba9036563aa9ca7809ea3e8cefcb670e9 /gnu/packages/bioinformatics.scm
parentd46491779e18cf614caeeb1b4becbd9171c64416 (diff)
parentd66cbd1adc799b08e66cd912822c6220499b4876 (diff)
downloadpatches-de32aa74b4f7762e887e80047804c42d495ab841.tar
patches-de32aa74b4f7762e887e80047804c42d495ab841.tar.gz
Merge branch 'master' into python-build-system
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm13
1 files changed, 3 insertions, 10 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f9929dfa4f..959a7ac2fd 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1252,9 +1252,6 @@ splice junctions between exons.")
(assoc-ref outputs "out") "/share/doc/bwa"))
(man (string-append
(assoc-ref outputs "out") "/share/man/man1")))
- (mkdir-p bin)
- (mkdir-p doc)
- (mkdir-p man)
(install-file "bwa" bin)
(install-file "README.md" doc)
(install-file "bwa.1" man)))
@@ -2018,7 +2015,7 @@ identify enrichments with functional annotations of the genome.")
(define-public diamond
(package
(name "diamond")
- (version "0.8.26")
+ (version "0.8.27")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2027,7 +2024,7 @@ identify enrichments with functional annotations of the genome.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "17s38pgjih6yc2z81040pircbv60c9wr33mbcyki2rfpv8rbxlh0"))))
+ "0g0zdyfnri9v7nfbh8f7zqs4af1xydqkiw8m0cx4jc2ql4chpf6a"))))
(build-system cmake-build-system)
(arguments
'(#:tests? #f ; no "check" target
@@ -2125,7 +2122,6 @@ of nucleic acid binding proteins.")
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin")))
- (mkdir-p bin)
(for-each (lambda (file)
(install-file file bin))
(find-files "../bin" ".*"))
@@ -2708,7 +2704,7 @@ estimates transcript expression.")
(alist-replace
'install
(lambda* (#:key outputs #:allow-other-keys)
- (let ((bin (string-append (assoc-ref outputs "out") "/bi/")))
+ (let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
(for-each (lambda (file)
(install-file file bin))
(find-files
@@ -4770,7 +4766,6 @@ optionally compressed by gzip.")
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin")))
- (mkdir-p bin)
(install-file "snap-aligner" bin)
(install-file "SNAPCommand" bin)
#t))))))
@@ -5630,7 +5625,6 @@ Needleman-Wunsch).")
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((bin (string-append (assoc-ref outputs "out") "/bin")))
- (mkdir-p bin)
(install-file "ParDRe" bin)
#t))))))
(inputs
@@ -7508,7 +7502,6 @@ intervals (e.g. genes, sequence alignments).")
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin")))
- (mkdir-p bin)
(for-each (lambda (file)
(install-file file bin))
(find-files "bin" ".*")))