From 84590149e6873d640b96997fb95cc57359a1aeeb Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 15 Nov 2016 19:40:06 +0100 Subject: gnu: hisat: Fix typo. * gnu/packages/bioinformatics.scm (hisat)[arguments]: Fix directory name in install phase. --- gnu/packages/bioinformatics.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5444f0a2a1..64c7bbad36 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2739,7 +2739,7 @@ estimates transcript expression.") (alist-replace 'install (lambda* (#:key outputs #:allow-other-keys) - (let ((bin (string-append (assoc-ref outputs "out") "/bi/"))) + (let ((bin (string-append (assoc-ref outputs "out") "/bin/"))) (for-each (lambda (file) (install-file file bin)) (find-files -- cgit v1.2.3 From daf72603ebcd7e78222d16273d4cda4e71a156de Mon Sep 17 00:00:00 2001 From: Petter Date: Mon, 21 Nov 2016 19:18:55 +0100 Subject: gnu: Remove redundancy where mkdir-p is followed by install-file . * gnu/packages/bioinformatics.scm (bwa)[arguments]: Remove redundant mkdir-p. (eigensoft)[arguments]: Likewise. (snap-aligner)[arguments]: Likewise. (pardre)[arguments]: Likewise. (piranha)[arguments]: Likewise. * gnu/packages/maths.scm (hypre)[arguments]: Likewise. * gnu/packages/mp3.scm (mpc123)[arguments]: Likewise. * gnu/packages/music.scm (tuxguitar)[arguments]: Likewise. * gnu/packages/pdf.scm (impressive)[arguments]: Likewise. * gnu/packages/qemu.scm (qemu)[arguments]: Likewise. Signed-off-by: Leo Famulari --- gnu/packages/bioinformatics.scm | 7 ------- 1 file changed, 7 deletions(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 64c7bbad36..97d3e48cec 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1261,9 +1261,6 @@ splice junctions between exons.") (assoc-ref outputs "out") "/share/doc/bwa")) (man (string-append (assoc-ref outputs "out") "/share/man/man1"))) - (mkdir-p bin) - (mkdir-p doc) - (mkdir-p man) (install-file "bwa" bin) (install-file "README.md" doc) (install-file "bwa.1" man))) @@ -2155,7 +2152,6 @@ of nucleic acid binding proteins.") (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) (bin (string-append out "/bin"))) - (mkdir-p bin) (for-each (lambda (file) (install-file file bin)) (find-files "../bin" ".*")) @@ -4834,7 +4830,6 @@ optionally compressed by gzip.") (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) (bin (string-append out "/bin"))) - (mkdir-p bin) (install-file "snap-aligner" bin) (install-file "SNAPCommand" bin) #t)))))) @@ -5694,7 +5689,6 @@ Needleman-Wunsch).") (replace 'install (lambda* (#:key outputs #:allow-other-keys) (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) - (mkdir-p bin) (install-file "ParDRe" bin) #t)))))) (inputs @@ -7572,7 +7566,6 @@ intervals (e.g. genes, sequence alignments).") (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) (bin (string-append out "/bin"))) - (mkdir-p bin) (for-each (lambda (file) (install-file file bin)) (find-files "bin" ".*"))) -- cgit v1.2.3 From 8e5f8c98e21932cc6bc58c0f976d650b2323c087 Mon Sep 17 00:00:00 2001 From: Ben Woodcroft Date: Tue, 22 Nov 2016 20:47:56 +1000 Subject: gnu: diamond: Update to 0.8.27. * gnu/packages/bioinformatics.scm (diamond): Update to 0.8.27. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 97d3e48cec..773b5909b6 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2045,7 +2045,7 @@ identify enrichments with functional annotations of the genome.") (define-public diamond (package (name "diamond") - (version "0.8.26") + (version "0.8.27") (source (origin (method url-fetch) (uri (string-append @@ -2054,7 +2054,7 @@ identify enrichments with functional annotations of the genome.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "17s38pgjih6yc2z81040pircbv60c9wr33mbcyki2rfpv8rbxlh0")))) + "0g0zdyfnri9v7nfbh8f7zqs4af1xydqkiw8m0cx4jc2ql4chpf6a")))) (build-system cmake-build-system) (arguments '(#:tests? #f ; no "check" target -- cgit v1.2.3