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* gnu: python-ipython: Update to 4.0.0.Ricardo Wurmus2016-11-04
| | | | | | | | | | | | | | | * gnu/packages/python.scm (python-ipython): Update to 4.0.0. [inputs]: Keep only "readline" and "which"; move the remaining inputs to propagated-inputs, except for "python-requests" and "python-nose" which are moved to native-inputs. [propagated-inputs]: Add "python-pexpect", "python-pickleshare", "python-simplegeneric", "python-traitlets", "python-ipykernel". [native-inputs]: Add "python-testpath". [arguments]: Enable building of HTML documentation. [source]: Remove patch. * gnu/packages/patches/python-ipython-inputhook-ctype.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Add python-jupyter-console.Ricardo Wurmus2016-11-04
| | | | | * gnu/packages/python.scm (python-jupyter-console, python2-jupyter-console): New variable.
* gnu: Add python-ipywidgets.Ricardo Wurmus2016-11-04
| | | | | * gnu/packages/python.scm (python-ipywidgets, python2-ipywidgets): New variables.
* gnu: Add python-widgetsnbextension.Ricardo Wurmus2016-11-04
| | | | | * gnu/packages/python.scm (python-widgetsnbextension, python2-widgetsnbextension): New variables.
* gnu: Add python-notebook.Ricardo Wurmus2016-11-04
| | | | | * gnu/packages/python.scm (python-notebook, python2-notebook): New variables.
* gnu: Add python-nbconvert.Ricardo Wurmus2016-11-04
| | | | | * gnu/packages/python.scm (python-nbconvert, python2-nbconvert): New variables.
* gnu: Add python-entrypoints.Ricardo Wurmus2016-11-04
| | | | | * gnu/packages/python.scm (python-entrypoints, python2-entrypoints): New variables.
* gnu: chromium-bsu: Update to 0.9.16.1.Kei Kebreau2016-11-04
| | | | | | * gnu/packages/games.scm (chromium-bsu): Update to 0.9.16.1. [arguments]: Remove 'set-sdl-paths phase. [inputs]: Add gnu-gettext.
* gnu: cross-base: Remove exports of cross compilers.Ludovic Courtès2016-11-04
| | | | | | | | | | | | They were never really needed and caused troubles in the presence of circular module dependencies as reported by Danny Milosavljevic <dannym@scratchpost.org> at <https://lists.gnu.org/archive/html/guix-devel/2016-11/msg00144.html>. * gnu/packages/cross-base.scm (xgcc-mips64el, xgcc-xtensa, xgcc-armhf): Remove. * gnu/packages/firmware.scm (ath9k-htc-firmware)[native-inputs]: Use 'cross-gcc' instead of XGCC-XTENSA.
* gnu: Remove '%final-inputs' references at the top level.Ludovic Courtès2016-11-04
| | | | | | | | | | | | Due to circular dependencies, referring to bindings exported by other modules from the top level is frowned upon. This patch addresses one of the remaining cases. * gnu/packages/base.scm (%final-inputs): New procedure. * gnu/packages/cross-base.scm: Remove (gnu packages commencement) import. (cross-gcc): Use the new '%final-inputs'. * gnu/packages/make-bootstrap.scm: Remove (gnu packages commencement) import. (package-with-relocatable-glibc): Use the new '%final-inputs'.
* gnu: r-nmf: Use bigmemory.Roel Janssen2016-11-04
| | | | | * gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add r-bigmemory and r-synchronicity.
* gnu: Add r-bigmemory.Roel Janssen2016-11-04
| | | | * gnu/packages/statistics.scm (r-bigmemory): New variable.
* gnu: Add r-synchronicity.Roel Janssen2016-11-04
| | | | * gnu/packages/statistics.scm (r-synchronicity): New variable.
* gnu: Add r-bigmemory-sri.Roel Janssen2016-11-04
| | | | gnu/packages/statistics.scm (r-bigmemory-sri): New variable.
* gnu: xmp: Update to 4.1.0.宋文武2016-11-04
| | | | * gnu/packages/audio.scm (xmp): Update to 4.1.0.
* gnu: libxmp: Update to 4.4.1.宋文武2016-11-04
| | | | * gnu/packages/audio.scm (libxmp): Update to 4.4.1.
* gnu: Add swh-plugins-lv2.Florian Paul Schmidt2016-11-04
| | | | | | * gnu/packages/audio.scm (swh-plugins-lv2): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add python-bleach.Ricardo Wurmus2016-11-04
| | | | | * gnu/packages/python.scm (python-bleach, python2-bleach): New variables.
* gnu: Add python-nbformat.Ricardo Wurmus2016-11-04
| | | | | * gnu/packages/python.scm (python-nbformat, python2-nbformat): New variables.
* gnu: Add python-html5lib-0.9.Ricardo Wurmus2016-11-04
| | | | | * gnu/packages/python.scm (python-html5lib-0.9, python2-html5lib-0.9): New variables.
* gnu: Add python-testpath.Ricardo Wurmus2016-11-04
| | | | | * gnu/packages/python.scm (python-testpath, python2-testpath): New variables.
* gnu: Add python-ipykernel.Ricardo Wurmus2016-11-04
| | | | | * gnu/packages/python.scm (python-ipykernel, python2-ipykernel): New variables.
* gnu: Add python-jupyter-client.Ricardo Wurmus2016-11-04
| | | | | * gnu/packages/python.scm (python-jupyter-client, python2-jupyter-client): New variables.
* gnu: Add python-jupyter-core.Ricardo Wurmus2016-11-04
| | | | | * gnu/packages/python.scm (python-jupyter-core, python2-jupyter-core): New variables.
* gnu: python-traitlets: Update to 4.2.0.Ricardo Wurmus2016-11-04
| | | | * gnu/packages/python.scm (python-traitlets): Update to 4.2.0.
* gnu: Add font-adobe-source-code-pro.Marius Bakke2016-11-03
| | | | * gnu/packages/fonts.scm (font-adobe-source-code-pro): New variable.
* gnu: Add geteltorito.Marius Bakke2016-11-03
| | | | * gnu/packages/cdrom.scm (geteltorito): New variable.
* gnu: maxima: Update to 5.38.1.Kei Kebreau2016-11-03
| | | | * gnu/packages/maths.scm (maxima): Update to 5.38.1.
* gnu: starfighter: Update to 1.6.Kei Kebreau2016-11-03
| | | | * gnu/packages/games.scm (starfighter): Update to 1.6.
* gnu: r-rcas: Update to 1.0.0.Ricardo Wurmus2016-11-03
| | | | * gnu/packages/bioinformatics.scm (r-rcas): Update to 1.0.0.
* gnu: r-rtracklayer: Update to 1.34.1.Ricardo Wurmus2016-11-03
| | | | * gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.1.
* gnu: r-biocparallel: Update to 1.8.1.Ricardo Wurmus2016-11-03
| | | | * gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.1.
* gnu: r-limma: Update to 3.30.2.Ricardo Wurmus2016-11-03
| | | | * gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.2.
* gnu: r-edger: Update to 3.16.1.Ricardo Wurmus2016-11-03
| | | | * gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.1.
* gnu: r-hmisc: Update to 4.0.0.Ricardo Wurmus2016-11-03
| | | | | | * gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0. [propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis, r-survival.
* gnu: r-r-oo: Update to 1.21.0.Ricardo Wurmus2016-11-03
| | | | * gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0.
* gnu: r-openssl: Update to 0.9.5.Ricardo Wurmus2016-11-03
| | | | * gnu/packages/statistics.scm (r-openssl): Update to 0.9.5.
* gnu: r-checkmate: Update to 1.8.2.Ricardo Wurmus2016-11-03
| | | | * gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2.
* gnu: r-acepack: Update to 1.4.1.Ricardo Wurmus2016-11-03
| | | | * gnu/packages/statistics.scm (r-acepack): Update to 1.4.1.
* gnu: r-gdtools: Update to 0.1.1.Ricardo Wurmus2016-11-03
| | | | | * gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1. [propagated-inputs]: Add r-withr.
* gnu: r-proto: Update to 1.0.0.Ricardo Wurmus2016-11-03
| | | | * gnu/packages/statistics.scm (r-proto): Update to 1.0.0.
* gnu: Add r-survival.Ricardo Wurmus2016-11-03
| | | | * gnu/packages/statistics.scm (r-survival): New variable.
* gnu: Add r-htmltable.Ricardo Wurmus2016-11-03
| | | | * gnu/packages/web.scm (r-htmltable): New variable.
* [PATCH] gnu: Add libjxr.Kei Kebreau2016-11-03
| | | | | | | * gnu/packages/image.scm (libjxr): New variable. * gnu/packages/patches/libjxr-fix-function-signature.patch: New file. * gnu/packages/patches/libjxr-fix-typos.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patches.
* gnu: sunxi-tools: Update to 1.4.1.Danny Milosavljevic2016-11-03
| | | | | | | | * gnu/packages/admin.scm (sunxi-tools): Update to 1.4.1. [arguments]: Add "CC=gcc" "all" to #:make-flags. Remove 'fix-Makefile' phase. Add 'install' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add pdf2svg.Arun Isaac2016-11-03
| | | | | | * gnu/packages/pdf.scm (pdf2svg): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: gnurl: Update to 7.51.0 [fixes CVE-2016-{8615..8625}].ng02016-11-02
| | | | | | * gnu/packages/gnunet.scm (gnurl): Update to 7.51.0. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add perl-getopt-long.Alex Sassmannshausen2016-11-02
| | | | | | * gnu/packages/perl.scm (perl-getopt-long): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: curl: Update replacement to 7.51.0 [fixes CVE-2016-{8615..8625}].Marius Bakke2016-11-02
| | | | | | * gnu/packages/curl.scm (curl)[replacement]: Update to 7.51.0. (curl-7.50.3): Replace with ... (curl-7.51.0): ... this.
* gnu: linux-libre: Update to 4.8.6.Mark H Weaver2016-11-02
| | | | | * gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash) (linux-libre): Update to 4.8.6.
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