| Commit message (Collapse) | Author | Age |
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* gnu/packages/cran.scm (r-sessioninfo): Update to 1.1.1.
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* gnu/packages/cran.scm (r-flextable): Update to 0.4.6.
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* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.6.
[propagated-inputs]: Remove r-pillar, r-tibble, and r-tidyselect.
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* gnu/packages/cran.scm (r-xts): Update to 0.11-2.
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* gnu/packages/cran.scm (r-psych): Update to 1.8.10.
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* gnu/packages/cran.scm (r-ipred): Update to 0.9-8.
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* gnu/packages/cran.scm (r-ffbase): Update to 0.12.7.
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* gnu/packages/cran.scm (r-pkgload): Update to 1.0.2.
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* gnu/packages/cran.scm (r-ps): Update to 1.2.1.
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* gnu/packages/graph.scm (r-rgraphviz): Update to 2.26.0.
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* gnu/packages/maths.scm (hdf5-1.10): New variable.
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* gnu/packages/bioconductor.scm (r-regioner): Update to 1.14.0.
[propagated-inputs]: Add r-biostrings.
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* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-biocneighbors): New variable.
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* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-ctc): Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.16.0.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.0.
[propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
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* gnu/packages/bioconductor.scm (r-graph): Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-multtest): Update to 2.38.0.
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* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.44.0.
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* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-marray): Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.10.0.
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* gnu/packages/bioconductor.scm (r-hpar): Update to 1.24.0.
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* gnu/packages/cran.scm (r-biocmanager): New variable.
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* gnu/packages/cran.scm (r-ncdf4): New variable.
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* gnu/packages/cran.scm (r-rcppannoy): New variable.
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As termcap is disabled and no terminfo directory is given, slang is not able
to query terminal capabilities. Specifying a correct path for terminfo will
automatically disable termcap support in the configuration.
* gnu/packages/slang.scm (slang)[source]: Remove the snippet disabling
termcap.
[arguments]: Set MISC_TERMINFO_DIRS to a correct location.
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Those two packages (from the same author) are no longer maintained and do not
even compile. Switch to a fork that is maintained even if it does not have any
release yet.
* gnu/packages/terminals.scm (libtsm)[origin]: Use
"https://github.com/Aetf/libtsm" as new origin and switch to git-fetch method.
(kmscon)[origin]: Use "https://github.com/Aetf/kmscon" as new origin and
switch to git-fetch method.
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Add an auto-login option that behaves as the one of mingetty-service.
* gnu/services/base.scm (kmscon-configuration)[auto-login]: New field.
(kmscon-service-type): Pass it to kmscon command.
* doc/guix.texi (Base Services): Document it.
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* gnu/services/base.scm (kmscon-service-type): Add "--no-switchvt" to kmscon
command.
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* gnu/packages/guile.scm (guile-newt): New variable.
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This is a follow-up to 2c17bd7b2955beef4130d11b33e07e4fb3b234dc.
* gnu/packages/kodi.scm (kodi)[arguments]: Remove unwanted symbols.
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* gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.3.2.
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* gnu/packages/gnupg.scm (gnupg): Update to 2.2.11.
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* gnu/build/install.scm (%root-profile): New variable.
(install-database-and-gc-roots): New procedure.
(populate-single-profile-directory): Replace inline code with a call to
'install-database-and-gc-roots'.
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This is another way to address <https://bugs.gnu.org/32184>, which was
previously addressed in commit 19c924af4f3726688ca155a905ebf1cb9acdfca2.
* gnu/build/install.scm (register-closure): Move to...
* gnu/build/vm.scm (register-closure): ... here. New procedure.
* guix/scripts/pack.scm (self-contained-tarball)[build]: Remove
now unneeded 'with-extensions' form and custom (guix config) module.
* tests/guix-pack.sh: Revert the strategy from
commit 19c924af4f3726688ca155a905ebf1cb9acdfca2.
* tests/pack.scm ("self-contained-tarball"): Likewise.
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* guix/scripts/pack.scm (store-database): New procedure.
(self-contained-tarball): Use it when LOCALSTATEDIR? is true.
Remove 'schema' and add 'database'.
[build]: Pass DATABASE to 'populate-single-profile-directory'.
(squashfs-image): Remove #:deduplicate? parameter.
[build]: Remove (gnu build install) and (guix config) from the imported
modules. Remove 'with-extensions'.
* gnu/build/install.scm (populate-single-profile-directory): Remove
#:deduplicate?, #:register?, and #:schema; add #:database. Remove call
to 'register-closure' and simply copy DATABASE instead.
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