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* gnu: dealii: Update to 8.5.1.Eric Bavier2017-10-24
| | | | | | Fixes compilation with boost@1.64.0. * gnu/packages/maths.scm (dealii): Update to 8.5.1.
* gnu: p4est: Update to 2.0.Eric Bavier2017-10-24
| | | | * gnu/packages/maths.scm (p4est): Update to 2.0.
* gnu: libhilbert: Remove package.Eric Bavier2017-10-24
| | | | | | | This package's source and webpage has disappeared for some time, and upstream projects (e.g. libmesh) seem to be bundling it, so we remove it for now. * gnu/packages/maths.scm (libhilbert): Remove variable.
* gnu: slepc: Update to 3.8.0.Eric Bavier2017-10-24
| | | | * gnu/packages/maths.scm (slepc): Update to 3.8.0.
* gnu: petsc: Update to 3.8.0.Eric Bavier2017-10-24
| | | | | * gnu/packages/maths.scm (petsc): Update to 3.8.0 [native-inputs]: Remove perl, which is no longer needed.
* gnu: bwa: Update to 0.7.17.Ben Woodcroft2017-10-25
| | | | * gnu/packages/bioinformatics.scm (bwa): Update to 0.7.17.
* gnu: bwa: Change source URL to GitHub.Ben Woodcroft2017-10-25
| | | | | * gnu/packages/bioinformatics.scm (bwa)[source]: Change source URL to GitHub.
* gnu: Add perl-moox-options.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-moox-options): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: perl-getopt-long-descriptive: Update to 0.100.Ricardo Wurmus2017-10-24
| | | | | * gnu/packages/perl.scm (perl-getopt-long-descriptive): Update to 0.100. [native-inputs]: Add perl-cpan-meta-check.
* gnu: Add perl-moox-configfromfile.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-moox-configfromfile): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-moox-file-configdir.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-moox-file-configdir): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-moox-cmd.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-moox-cmd): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: perl-list-moreutils: Update to 0.426.Ricardo Wurmus2017-10-24
| | | | | | | | * gnu/packages/perl.scm (perl-list-moreutils): Update to 0.426. [arguments]: Work around dotless @INC problem. [native-inputs]: Add perl-test-leaktrace; remove perl-inc-latest and perl-test-writevariants. [propagated-inputs]: Add perl-list-moreutils-xs.
* gnu: Add perl-list-moreutils-xs.Ricardo Wurmus2017-10-24
| | | | * gnu/packages/perl.scm (perl-list-moreutils-xs): New variable.
* gnu: Add perl-libintl-perl.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-libintl-perl): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-file-configdir.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-file-configdir): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-data-record.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-data-record): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-data-printer.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-data-printer): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-clone-pp.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-clone-pp): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-data.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-data): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: gnurl: Update to 7.56.1.ng02017-10-24
| | | | | | * gnu/packages/gnunet.scm (gnurl): Update to 7.56.1. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: screen: Update to 4.6.2.Efraim Flashner2017-10-24
| | | | * gnu/packages/screen.scm (screen): Update to 4.6.2.
* gnu: mupdf: Fix CVE-2017-{14685,14686,14687}.Leo Famulari2017-10-24
| | | | | | | | * gnu/packages/patches/mupdf-CVE-2017-14685.patch, gnu/packages/patches/mupdf-CVE-2017-14686.patch, gnu/packages/patches/mupdf-CVE-2017-14687.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/pdf.scm (mupdf)[source]: Use them.
* gnu: icu4c: Fix CVE-2017-14952.Leo Famulari2017-10-24
| | | | | | | * gnu/packages/patches/icu4c-CVE-2017-14952.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/icu4c.scm (icu4c)[replacement]: New field. (icu4c-fixed): New variable.
* gnu: syncthing: Split into two outputs.Leo Famulari2017-10-24
| | | | | | * gnu/packages/syncthing.scm (syncthing)[outputs]: New field. [arguments]: Change the 'install' and 'install-docs' phases to install to the two outputs.
* gnu: syncthing: Use install-source? to disable installing the source code.Leo Famulari2017-10-24
| | | | | * gnu/packages/syncthing.scm (syncthing): Set #:install-source? #f instead of deleting the install-source phase.
* gnu: Add perl-types-path-tiny.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-types-path-tiny): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-type-tiny-xs.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-type-tiny-xs): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-test-taint.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-test-taint): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-term-size-any.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-term-size-any): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-term-size-perl.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-term-size-perl): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-devel-hide.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-devel-hide): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-sort-naturally.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-sort-naturally): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-proc-invokeeditor.Petter2017-10-24
| | | | | | * gnu/packages/perl.scm (perl-proc-invokeeditor): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-archive-extract.Petter2017-10-24
| | | | | | * gnu/packages/compression.scm (perl-archive-extract): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-gnupg-interface.Ricardo Wurmus2017-10-24
| | | | | | * gnu/packages/gnupg.scm (perl-gnupg-interface): New variable. Co-authored-by: Petter <petter@mykolab.ch>
* gnu: borg: Split up the monolithic man page.Leo Famulari2017-10-24
| | | | | * gnu/packages/backup.scm (borg)[arguments]: Rewrite 'install-docs' phase to install one man page per Borg sub-command.
* gnu: python-docutils: Update to 0.14.Leo Famulari2017-10-24
| | | | * gnu/packages/python.scm (python-docutils, python2-docutils): Update to 0.14.
* gnu: Add perl-xml-twig.Petter2017-10-24
| | | | | | * gnu/packages/xml.scm (perl-xml-twig): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: curl: Update replacement to 7.56.1 [fixes CVE-2017-1000257].Marius Bakke2017-10-24
| | | | | | * gnu/packages/curl.scm (curl-7.56.0): Rename to ... (curl-7.56.1): ... this. Update to 7.56.1. (curl)[replacement]: Adjust accordingly.
* gnu: claws-mail: Re-enable vcalendar.Danny Milosavljevic2017-10-24
| | | | | * gnu/packages/mail.scm (claws-mail): Use module (gnu packages calendar). [inputs]: Add libical.
* gnu: git: Update to 2.14.3.Marius Bakke2017-10-24
| | | | * gnu/packages/version-control.scm (git): Update to 2.14.3.
* gnu: Add sorcer.Ricardo Wurmus2017-10-24
| | | | * gnu/packages/music.scm (sorcer): New variable.
* gnu: Add papagayo.Ricardo Wurmus2017-10-24
| | | | * gnu/packages/animation.scm (papagayo): New variable.
* gnu: Add perl-html-tidy.Petter2017-10-24
| | | | | | * gnu/packages/web.scm (perl-html-tidy): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add tidyp.Petter2017-10-24
| | | | | | * gnu/packages/web.scm (tidyp): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-lwp-online.Petter2017-10-24
| | | | | | * gnu/packages/web.scm (perl-lwp-online): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-xml-handler-yawriter.Petter2017-10-24
| | | | | | * gnu/packages/xml.scm (perl-xml-handler-yawriter): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-xml-sax-writer.Petter2017-10-24
| | | | | | * gnu/packages/xml.scm (perl-xml-sax-writer): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add perl-xml-filter-buffertext.Petter2017-10-24
| | | | | | * gnu/packages/xml.scm (perl-xml-filter-buffertext): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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