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* gnu: ocaml@4.02: Remove the package, affected by a CVE, and its dependentJulien Lepiller2019-04-25
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | packages. This fixes <https://bugs.gnu.org/27462>. * gnu/packages/ocaml.scm (ocaml-4.02, camlp4-4.02, ocaml4.02-menhir) (ocaml4.02-lablgtk, ocaml4.02-findlib, ocaml4.02-ounit) (ocaml4.02-camlzip, ocaml4.02-ocamlmod, ocaml4.02-zarith) (ocaml4.02-qcheck, ocaml4.02-qtest, ocaml4.02-stringext) (ocaml4.02-bisect, ocaml4.02-bitstring, ocaml4.02-result) (ocaml4.02-topkg, ocaml4.02-rresult, ocaml4.02-sqlite3, ocaml4.02-csv) (ocaml4.02-mtime, ocaml4.02-cmdliner, ocaml4.02-fmt, ocaml4.02-astring) (ocaml4.02-alcotest, ocaml4.02-ppx-tools, ocaml4.02-react, ocaml4.02-ssl) (ocaml4.02-lwt, ocaml4.02-lwt-log, ocaml4.02-logs, ocaml4.02-fpath) (ocaml4.02-bos, ocaml4.02-xmlm, ocaml4.02-ulex, ocaml4.02-uchar) (ocaml4.02-uutf, ocaml4.02-jsonm, ocaml4.02-ocurl, ocaml4.02-base64) (ocaml4.02-omake, ocaml4.02-batteries, ocaml4.02-pcre, ocaml4.02-oasis) (ocaml4.02-js-build-tools, ocaml4.02-bin-prot, ocaml4.02-fieldslib) (ocaml4.02-ppx-core, ocaml4.02-ppx-optcomp, ocaml4.02-ppx-driver) (ocaml4.02-cppo, ocaml4.02-ppx-deriving, ocaml4.02-ppx-type-conv) (ocaml4.02-ppx-inline-test, ocaml4.02-ppx-bench, ocaml4.02-ppx-compare) (ocaml4.02-sexplib, ocaml4.02-typerep, ocaml4.02-variantslib) (ocaml4.02-ppx-sexp-conv, ocaml4.02-ppx-variants-conv) (ocaml4.02-ppx-here, ocaml4.02-ppx-assert, ocaml4.02-ppx-enumerate) (ocaml4.02-ppx-let, ocaml4.02-ppx-typerep-conv, ocaml4.02-ppx-sexp-value) (ocaml4.02-ppx-pipebang, ocaml4.02-ppx-bin-prot, ocaml4.02-ppx-fail) (ocaml4.02-ppx-custom-printf, ocaml4.02-ppx-sexp-message) (ocaml4.02-ppx-fields-conv, ocaml4.02-seq, ocaml4.02-re) (ocaml4.02-ppx-expect, ocaml4.02-ppx-jane, ocaml4.02-core-kernel) (ocaml4.02-async-kernel, ocaml4.02-async-rpc-kernel, ocaml4.02-core) (ocaml4.02-async-unix, ocaml4.02-async-extra, ocaml4.02-async) (ocaml4.02-ocplib-endian, ocaml4.02-easy-format, optcomp) (ocaml4.02-piqilib, ocaml4.02-uuidm, ocaml4.02-graph, ocaml4.02-piqi) (ocaml4.02-camomile, ocaml4.02-zed, ocaml4.02-lambda-term): Remove variables. * guix/build-system/ocaml.scm (default-ocaml4.02) (default-ocaml4.02-findlib, package-with-ocaml4.02) (strip-ocaml4.02-variant): Remove variables.
* gnu: ocamlify: Downgrade to 0.0.1.Julien Lepiller2019-04-25
| | | | | | | | Version 0.0.2 cannot be built with the latest OCaml, whereas this version does. This is also the version used by opam. * gnu/packages/ocaml.scm (ocamlify): Downgrade to 0.0.1. [arguments]: Do not use ocaml-4.02.
* gnu: Remove ocaml-jbuilder.Julien Lepiller2019-04-25
| | | | | | | Jbuilder is deprecated and replaced by dune. * gnu/packages/ocaml.scm (ocaml-jbuilder): Remove variable. (ocaml-zed, ocaml-utop): Use dune-build-system.
* gnu: bap: Update to 1.6.0.Julien Lepiller2019-04-25
| | | | | | | | | * gnu/packages/ocaml.scm (bap): Update to 1.6.0. (ocaml-frontc): Update to 3.4.1. (ocaml-fileutils, ocaml-cstruct, ocaml-hex, ocaml-ezjsonm, ocaml-uri): New variables. (ocaml4.02-fileutils, ocaml4.02-cstruct, ocaml4.02-hex, ocaml4.02-ezjsonm, ocaml4.02-uri): Remove variables.
* gnu: Add ocaml-bigarray-compat.Julien Lepiller2019-04-25
| | | | * gnu/packages/ocaml.scm (ocaml-bigarray-compat): New variable.
* gnu: fltk: Update to 1.3.5.Nicolas Goaziou2019-04-25
| | | | * gnu/packages/fltk.scm (fltk): Update to 1.3.5.
* installer: Ask for confirmation of the user passwords.Ludovic Courtès2019-04-25
| | | | | * gnu/installer/newt/user.scm (run-user-add-page): Add #:name and #:home-directory and honor them. Add call to 'confirm-password'.
* installer: Ask for confirmation of the root password.Ludovic Courtès2019-04-25
| | | | | * gnu/installer/newt/user.scm (confirm-password): New procedure. (run-root-password-page): Add call to 'confirm-password'.
* installer: Use FLAG-PASSWORD for the encryption passphrase confirmation.Ludovic Courtès2019-04-25
| | | | | * gnu/installer/newt/partition.scm (prompt-luks-passwords) <password-confirm-page>: Pass #:input-flags to 'run-input-page'.
* gnu: Add python-yubikey-manager and python2-yubikey-manager.Chris Marusich2019-04-24
| | | | | * gnu/packages/security-token.scm (python-yubikey-manager) (python2-yubikey-manager): New variables.
* gnu: Add python-fido2 and python2-fido2.Chris Marusich2019-04-24
| | | | | * gnu/packages/security-token.scm (python-fido2, python2-fido2): New variables.
* gnu: Add public-suffix-list.Chris Marusich2019-04-24
| | | | * gnu/packages/dns.scm (public-suffix-list): New variable.
* gnu: Add libu2f-host.Chris Marusich2019-04-24
| | | | * gnu/packages/security-token.scm (libu2f-host): New variable.
* gnu: Add python-pyscard and python2-pyscard.Chris Marusich2019-04-24
| | | | | * gnu/packages/security-token.scm (python-pyscard, python2-pyscard): New variables.
* gnu: Add python-pyfakefs and python2-pyfakefs.Chris Marusich2019-04-24
| | | | | | | * gnu/packages/patches/python-pyfakefs-remove-bad-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add the patch. * gnu/packages/check.scm (python-pyfakefs, python2-pyfakefs): New variables.
* gnu: bind: Update to 9.12.4-P1 [fixes CVE-2018-5743, CVE-2019-6467].Tobias Geerinckx-Rice2019-04-25
| | | | | | | | * gnu/packages/dns.scm (isc-bind): Update to 9.12.4-P1. [source]: Add patch. [inputs]: Add python and python-ply. * packages/patches/bind-fix-unused-pk11-ecc-constants.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: r-yamss: Fix typo in description.Tobias Geerinckx-Rice2019-04-25
| | | | * gnu/packages/bioconductor.scm (r-yamss)[description]: Fix typo.
* gnu: python-dill: Fix typo in description.Tobias Geerinckx-Rice2019-04-25
| | | | * gnu/packages/python-xyz.scm (python-dill)[description]: Fix typo.
* gnu, guix: Yearly ritual purging of the filesystems.Tobias Geerinckx-Rice2019-04-25
| | | | | | | | | | | | | | | | | | | | | * gnu/packages/android.scm (android-ext4-utils)[synopsis]: Fix ‘file system’ spelling. * gnu/packages/disk.scm (rmlint)[synopsis, description]: Likewise. * gnu/packages/golang.scm (go-github-com-kr-fs)[synopsis, description]: Likewise & edit for grammar. * gnu/packages/ipfs.scm (gx, go-ipfs)[description]: Likewise. * /gnu/packages/java.scm (java-commons-vfs)[synopsis]: Likewise. * gnu/packages/linux.scm (fuseiso)[description]: Likewise. (genext2fs)[synopsis, description]: Likewise. * gnu/packages/package-management.scm (libostree)[description]: Likewise. * gnu/packages/python-xyz.scm (python-requests-file)[description]: Likewise & mark up. * gnu/packages/rails.scm (ruby-with-advisory-lock)[description]: Likewise. * gnu/packages/ruby.scm (ruby-rerun)[description]: Likewise. * guix/build/go-build-system.scm (setup-go-environment)<docstring>: Likewise. * guix/store/deduplication.scm (get-temp-link)<docstring>: Likewise.
* gnu: bubblewrap: Edit description.Tobias Geerinckx-Rice2019-04-25
| | | | * gnu/packages/virtualization.scm (bubblewrap)[description]: Mark up & edit.
* gnu: perl-filesys-notify-simple: Edit description.Tobias Geerinckx-Rice2019-04-25
| | | | * gnu/packages/perl.scm (perl-filesys-notify-simple)[description]: Mark up & edit.
* gnu: libimobiledevice: Edit description.Tobias Geerinckx-Rice2019-04-25
| | | | * gnu/packages/libusb.scm (libimobiledevice)[description]: Fix grammar & spelling.
* gnu: libsvm: Update to 3.23.Tobias Geerinckx-Rice2019-04-25
| | | | * gnu/packages/machine-learning.scm (libsvm): Update to 3.23.
* gnu: openfst: Update to 1.7.2.Tobias Geerinckx-Rice2019-04-25
| | | | * gnu/packages/machine-learning.scm (openfst): Update to 1.7.2.
* vm: Adjust FAT serial number code to 32-bit Guile.Ludovic Courtès2019-04-25
| | | | | | | On 32-bit systems, 'string-hash' would raise an out-of-range exception when the second argument was 2^32. * gnu/build/vm.scm (make-iso9660-image): Pass 2^32 - 1 to 'string-hash'.
* installer: Preserve order of user accounts.Ludovic Courtès2019-04-25
| | | | * gnu/installer/newt/user.scm (run-user-page): Add call to 'reverse'.
* vm: 'system-disk-image' no longer requires the OS to define the "/" file system.Ludovic Courtès2019-04-25
| | | | | | | | | | Previously 'guix system disk-image' would fail if the OS didn't define a "/" file system, even though it actually overrides that file system. * gnu/system/vm.scm (system-disk-image)[root-uuid]: Turn into a procedure. Call 'root-uuid' on a variant of OS with a "/" file system and inherit from that.
* installer: Ask for the root account password.Ludovic Courtès2019-04-25
| | | | | | | | | | Fixes <https://bugs.gnu.org/35399>. * gnu/installer/newt/user.scm (run-root-password-page): New procedure. * gnu/installer/user.scm (users->configuration): Filter out the "root" account. * gnu/installer/final.scm (create-user-database): Set 'uid' field in 'user-account' form.
* installer: 'run-input-page' has a new #:input-flags parameter.Ludovic Courtès2019-04-25
| | | | | * gnu/installer/newt/page.scm (run-input-page): Add #:input-flags and honor it.
* installer: Ask for user password and initialize /etc/shadow.Ludovic Courtès2019-04-25
| | | | | | | | | | | | | | | Partly fixes <https://bugs.gnu.org/35399>. * gnu/installer/user.scm (<user>)[password]: New field. * gnu/installer/final.scm (%seed): New variable. (integer->alphanumeric-char, random-string) (create-user-database): New procedures. (install-system): Call 'create-user-database'. * gnu/installer/newt/final.scm (run-install-shell): Add #:users and pass it to 'install-system'. (run-final-page): Pass #:users to 'run-install-shell'. * gnu/installer/newt/user.scm (run-user-add-page): Add password entry. Pass its result as the 'password' field of <user>.
* installer: Add missing 'G_' for networking message.Ludovic Courtès2019-04-25
| | | | | * gnu/installer/newt/network.scm (wait-technology-powered): Add missing 'G_'.
* system: Add guile-readline and guile-colorized to %BASE-PACKAGES.Ludovic Courtès2019-04-25
| | | | | | | This adds pretty much nothing to the system closure size. * gnu/system.scm (%base-packages): Add GUILE-READLINE and GUILE-COLORIZED.
* install: Add node name in Castellano.Ludovic Courtès2019-04-25
| | | | * gnu/system/install.scm (%installation-node-names): Add "es".
* services: fprintd: Provide polkit policy.Danny Milosavljevic2019-04-24
| | | | | * gnu/services/authentication.scm (fprintd-service-type)[extensions]: Add polkit-service-type.
* gnu: r-xtable: Update to 1.8-4.Ricardo Wurmus2019-04-24
| | | | * gnu/packages/statistics.scm (r-xtable): Update to 1.8-4.
* gnu: r-dbplyr: Update to 1.4.0.Ricardo Wurmus2019-04-24
| | | | * gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.0.
* gnu: r-testthat: Update to 2.1.1.Ricardo Wurmus2019-04-24
| | | | * gnu/packages/statistics.scm (r-testthat): Update to 2.1.1.
* gnu: r-igraph: Update to 1.2.4.1.Ricardo Wurmus2019-04-24
| | | | * gnu/packages/graph.scm (r-igraph): Update to 1.2.4.1.
* gnu: r-pamr: Update to 1.56.1.Ricardo Wurmus2019-04-24
| | | | * gnu/packages/cran.scm (r-pamr): Update to 1.56.1.
* gnu: r-ggforce: Update to 0.2.2.Ricardo Wurmus2019-04-24
| | | | * gnu/packages/cran.scm (r-ggforce): Update to 0.2.2.
* gnu: r-rms: Update to 5.1-3.1.Ricardo Wurmus2019-04-24
| | | | * gnu/packages/cran.scm (r-rms): Update to 5.1-3.1.
* gnu: r-genetics: Update to 1.3.8.1.2.Ricardo Wurmus2019-04-24
| | | | * gnu/packages/cran.scm (r-genetics): Update to 1.3.8.1.2.
* gnu: r-fields: Update to 9.7.Ricardo Wurmus2019-04-24
| | | | * gnu/packages/cran.scm (r-fields): Update to 9.7.
* gnu: r-splitstackshape: Update to 1.4.8.Ricardo Wurmus2019-04-24
| | | | * gnu/packages/cran.scm (r-splitstackshape): Update to 1.4.8.
* gnu: r-emmeans: Update to 1.3.4.Ricardo Wurmus2019-04-24
| | | | * gnu/packages/cran.scm (r-emmeans): Update to 1.3.4.
* gnu: r-sys: Update to 3.2.Ricardo Wurmus2019-04-24
| | | | * gnu/packages/cran.scm (r-sys): Update to 3.2.
* gnu: zynaddsubfx: Update to 3.0.5.Tobias Geerinckx-Rice2019-04-24
| | | | * gnu/packages/music.scm (zynaddsubfx): Update to 3.0.5.
* gnu: padthv1: Update to 0.9.7.Tobias Geerinckx-Rice2019-04-24
| | | | * gnu/packages/music.scm (padthv1): Update to 0.9.7.
* gnu: samplv1: Update to 0.9.7.Tobias Geerinckx-Rice2019-04-24
| | | | * gnu/packages/music.scm (samplv1): Update to 0.9.7.
* gnu: synthv1: Update to 0.9.7.Tobias Geerinckx-Rice2019-04-24
| | | | * gnu/packages/music.scm (synthv1): Update to 0.9.7.
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