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* gnu: Add python-pyxb.•••* gnu/packages/xml.scm (python-pyxb, python2-pyxb): New variables. Marius Bakke2016-09-27
* gnu: python-pysam: Update to 0.9.1.4.•••* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): Update to 0.9.1.4. Marius Bakke2016-09-27
* Add missing exports.•••Reported by Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com> at <https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01686.html>. * gnu/system/file-systems.scm (%tty-gid): Export. * guix/build-system/python.scm (default-python, default-python2): Export. Ludovic Courtès2016-09-27
* gnu: openssl-next: Update to 1.1.0b [fixes CVE-2016-6309].•••* gnu/packages/tls.scm (openssl-next): Update to 1.1.0b. Leo Famulari2016-09-26
* gnu: openssl: Update replacement to 1.0.2j [fixes CVE-2016-7052].•••* gnu/packages/tls.scm (openssl): Update replacement to 1.0.2j. (openssl-1.0.2i): Replace with... (openssl-1.0.2j): ... new variable. Leo Famulari2016-09-26
* gnu: libftdi: Propagate the libusb input.•••* gnu/packages/libftdi.scm (libftdi): Change libusb from an input to a propagated-input. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic2016-09-26
* gnu: ncbi-vdb: Only build on i686 and x86_64.•••* gnu/packages/bioinformatics.scm (ncbi-vdb)[supported-systems]: Only build on i686 and x86_64. [arguments]: Add mandatory "-msse2" flag to CFLAGS. Ricardo Wurmus2016-09-26
* gnu: ghc-pandoc: Update to 1.17.2.•••* gnu/packages/haskell.scm (ghc-pandoc): Update to 1.17.2. Ricardo Wurmus2016-09-26
* gnu: ghc-texmath: Update to 0.8.6.5.•••* gnu/packages/haskell.scm (ghc-texmath): Update to 0.8.6.5. Ricardo Wurmus2016-09-26
* gnu: ghc-cmark: Update to 0.5.3.1.•••* gnu/packages/haskell.scm (ghc-cmark): Update to 0.5.3.1. Ricardo Wurmus2016-09-26
* gnu: ghc-highlighting-kate: Update to 0.6.3.•••* gnu/packages/haskell.scm (ghc-highlighting-kate): Update to 0.6.3. Ricardo Wurmus2016-09-26
* gnu: ghc-pandoc-types: Update to 1.16.1.1.•••* gnu/packages/haskell.scm (ghc-pandoc-types): Update to 1.16.1.1. Ricardo Wurmus2016-09-26
* gnu: ghc-tagsoup: Update to 0.14.•••* gnu/packages/haskell.scm (ghc-tagsoup): Update to 0.14. Ricardo Wurmus2016-09-26
* gnu: tbb: Fail on test errors.•••* gnu/packages/tbb.scm (tbb)[arguments]: Add phase "fail-on-test-errors". Ricardo Wurmus2016-09-26
* gnu: ghc-tls: Update to 1.3.8.•••* gnu/packages/haskell.scm (ghc-tls): Update to 1.3.8. Ricardo Wurmus2016-09-26
* gnu: tbb: Use modify-phases syntax.•••* gnu/packages/tbb.scm (tbb)[arguments]: Use "modify-phases" syntax. Ricardo Wurmus2016-09-26
* gnu: vsearch: Update to 2.1.1.•••* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.1. Ben Woodcroft2016-09-26
* gnu: azr3: Fix libsigc++ build errors.•••* gnu/packages/audio.scm (azr3)[arguments]: Add "-std=gnu++11" flag. [source]: Add patch. * gnu/packages/patches/azr3.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ricardo Wurmus2016-09-26
* gnu: qtractor: Update to 0.7.9.•••* gnu/packages/music.scm (qtractor): Update to 0.7.9. Ricardo Wurmus2016-09-26
* gnu: Add r-txdb-hsapiens-ucsc-hg19-knowngene.•••* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-grohmm.•••* gnu/packages/bioinformatics.scm (r-grohmm): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-systempiper.•••* gnu/packages/bioinformatics.scm (r-systempiper): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-shortread.•••* gnu/packages/bioinformatics.scm (r-shortread): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-gostats.•••* gnu/packages/bioinformatics.scm (r-gostats): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-category.•••* gnu/packages/bioinformatics.scm (r-category): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-gseabase.•••* gnu/packages/bioinformatics.scm (r-gseabase): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-rbgl.•••* gnu/packages/bioinformatics.scm (r-rbgl): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-annotationforge.•••* gnu/packages/bioinformatics.scm (r-annotationforge): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-batchjobs.•••* gnu/packages/statistics.scm (r-batchjobs): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-fail.•••* gnu/packages/statistics.scm (r-fail): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-bbmisc.•••* gnu/packages/statistics.scm (r-bbmisc): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-checkmate.•••* gnu/packages/statistics.scm (r-checkmate): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-backports.•••* gnu/packages/statistics.scm (r-backports): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-sendmailr.•••* gnu/packages/statistics.scm (r-sendmailr): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-pheatmap.•••* gnu/packages/statistics.scm (r-pheatmap): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-matrix.•••* gnu/packages/statistics.scm (r-matrix): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-deseq2.•••* gnu/packages/bioinformatics.scm (r-deseq2): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-genefilter.•••* gnu/packages/bioinformatics.scm (r-genefilter): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-hmisc.•••* gnu/packages/statistics.scm (r-hmisc): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-geneplotter.•••* gnu/packages/bioinformatics.scm (r-geneplotter): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-annotate.•••* gnu/packages/bioinformatics.scm (r-annotate): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-rpart.•••* gnu/packages/statistics.scm (r-rpart): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-rjson.•••* gnu/packages/web.scm (r-rjson): New variable. Ricardo Wurmus2016-09-26
* gnu: Add r-hwriter.•••* gnu/packages/web.scm (r-hwriter): New variable. Ricardo Wurmus2016-09-26
* gnu: tcc: Disable build on MIPS.•••* gnu/packages/c.scm (tcc)[supported-systems]: Disable build on mips64el. Ricardo Wurmus2016-09-26
* gnu: Add optipng.•••* gnu/packages/image.scm (optipng): New variable. Signed-off-by: Kei Kebreau <kei@openmailbox.org> Arun Isaac2016-09-25
* system: Don't emit a GRUB 'search' command when passed a GRUB file name.•••Reported by Tomáš Čech <tcech@suse.com> at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=20067#26>. * gnu/system/grub.scm (grub-root-search): Don't emit anything when FILE is a string that does not denote an absolute file name. Ludovic Courtès2016-09-26
* gnu: epiphany: Drop NSS and libwnck.•••These dependencies were dropped in Epiphany 3.21.x. * gnu/packages/gnome.scm (epiphany)[inputs]: Remove "nss" and "libwnck". Ricardo Wurmus2016-09-25
* gnu: epiphany: Update to 3.22.0.•••* gnu/packages/gnome.scm (epiphany): Update to 3.22.0. Ricardo Wurmus2016-09-25
* gnu: python-virtualenv: Update to 15.0.3.•••* gnu/packages/python.scm (python-virtualenv): Update to 15.0.3. [arguments]: Disable failing test. Ricardo Wurmus2016-09-25
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