| Commit message (Collapse) | Author | Age |
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* gnu/packages/gnome.scm (deja-dup): New variable.
* gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file entry.
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* gnu/packages/package-management.scm (guix): Update to f1ddfe4.
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* gnu/packages/python.scm (python-flaky)[description]: Escape "@".
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This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.9.10-P2, commit ecb232bdfcb2718de5944bcf4d9c4e288ec41519.
See 'CHANGELOG' in the source distribution for more information.
* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.10-P3.
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This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.11.1-P2, commit faa1369e3cb72bda4ba8b63029d0ad780df9cf78.
See 'CHANGELOG' in the source distribution for more information.
* gnu/packages/dns.scm (isc-bind): Update to 9.11.1-P3.
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This is needed to avoid compilation problems caused by the cyclic dependency
between (gnu packages ncurses) and (gnu packages linux).
* gnu/packages/linux.scm (ncurses/gpm): Move to ...
* gnu/packages/ncurses.scm (ncurses/gpm): ... here. Fix misleading
indentation. Add (gnu packages linux) to the module imports.
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* gnu/packages/linux.scm (linux-libre)[arguments]: Add to the regex to
find and install the aarch64-linux kernel.
* gnu/system.scm (system-linux-image-file-name): Add entry for aarch64.
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* gnu/packages/xorg.scm (xf86-video-freedreno): New variable.
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* gnu/packages/bootloaders.scm (u-boot-odroid-c2): New variable.
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* gnu/packages/bootloaders.scm (u-boot): Update to 2017.07.
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* gnu/packages/samba.scm (tevent): Update to 0.9.33.
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* gnu/packages/samba.scm (talloc): Update to 2.1.10.
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* gnu/packages/samba.scm (ldb): Update to 1.1.31.
[native-inputs]: Add CMOCKA.
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* gnu/packages/check.scm (cmocka): Update to 1.1.1.
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* gnu/packages/databases.scm (tdb): Update to 1.3.14.
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* gnu/packages/python.scm (python-scipy): Update to 0.19.1.
[source]: Use 'pypi-uri'.
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* gnu/packages/python.scm (python-matplotlib): Update to 2.0.2.
[source]: Use 'pypi-uri'.
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* gnu/packages/python.scm (python-pyparsing, python2-pyparsing): Update to
2.2.0.
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* gnu/packages/python.scm (python-pyparsing)[arguments]<#:phases>: Use
'modify-phases'.
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gnu/packages/wm.scm (xmobar): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/bash.scm (bash-completion): Update to 2.7.
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* gnu/packages/mail.scm (getmail): Update to 5.1.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1.
[source]: Add patch to fix compilation.
[arguments]: Adjust regular expressions modifying 'SConstruct'.
* gnu/packages/patches/metabat-fix-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.4.8.
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* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5.
[origin]: Remove fix-makefile patch.
[arguments]: Add configure flags, add LIBS make flag. Do not delete
configure phase.
* gnu/packages/patches/bcftools-fix-makefile.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/bioinformatics.scm (samtools): Update to 1.5.
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* gnu/packages/bioinformatics.scm (htslib): Update to 1.5.
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* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.11.2.2.
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* gnu/packages/bioinformatics (htslib-1.3): New variable.
(bamm)[inputs]: Replace htslib with htslib-1.3.
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* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1.
[arguments]: Move Makefile modifications from here ...
[source]: ... to added patch. Adjust patch for update to 1.4.
* gnu/packages/patches/bcftools-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
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* gnu/packages/bioinformatics.scm (samtools): Update to 1.4.1.
[arguments]: Add '--with-htslib=system' configure flag.
[inputs]: Add htslib.
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* gnu/packages/bioinformatics.scm (htslib): Update to 1.4.1.
[inputs]: Add curl, openssl.
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* gnu/packages/bioinformatics.scm (samtools)[arguments]: Use "modify-phases"
syntax.
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* gnu/packages/wm.scm (bspwm): Update to 0.9.3.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/shells.scm (oksh): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/patches/quassel-fix-tls-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/irc.scm (quassel)[source]: Use it.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/video.scm (youtube-dl): Update to 2017.07.23.
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* gnu/packages/ssh.scm (mosh): Update to 1.3.2.
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* gnu/packages/medical.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Co-authored-by: Quiliro <quiliro@fsfla.org>
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* gnu/packages/qt.scm (python-pyqt+qscintilla): New variable.
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* gnu/packages/qt.scm (python-qscintilla): New variable.
Co-authored-by: Quiliro <quiliro@fsfla.org>
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* gnu/packages/qt.scm (qscintilla): New variable.
Co-authored-by: Quiliro <quiliro@fsfla.org>
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* gnu/packages/cran.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/statistics.scm (r-colorspace): Move to cran.scm.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.3.
(%linux-libre-hash): Update hash.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.39.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.78.
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* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.14.3.
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* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.28.4.
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This is a followup to c799eb2eb8b1a820147af96988eddaa9f752994b.
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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Superseded by python-faker since ce7911ddae5d30ba73c8c9552b7d4e71268e5db3.
* gnu/packages/python.scm (python-fake-factory, python2-fake-factory):
Remove variables.
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