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* gnu: Move web packages from python to python-web.Ludovic Courtès2017-11-13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This is in part to address <https://bugs.gnu.org/27284>. * gnu/packages/python.scm (python-httplib2, python2-httplib2) (python-sockjs-tornado, python2-sockjs-tornado) (python-flask-babel, python2-flask-babel) (python-html5lib, python2-html5lib) (python-html5lib-0.9, python2-html5lib-0.9) (python-html5-parser, python2-html5-parser) (python-webencodings, python2-webencodings) (python-openid, python2-openid, python-cssutils, python2-cssutils) (python-cssselect, python2-cssutils) (python-openid-cla, python2-openid-cla) (python-openid-teams, python2-openid-teams) (python-tornado, python2-tornado) (python-tornado-http-auth, python-terminado, python2-terminado) (python-webob, python2-webob, python-zope-event, python2-zope-event) (python-zope-interface, python2-zope-interface) (python-zope-exceptions, python2-zope-exceptions) (python-zope-testing, python2-zope-testing) (python-zope-testrunner, python2-zope-testrunner) (python-zope-i18nmessageid, python2-zope-i18nmessageid) (python-zope-schema, python2-zope-schema) (python-zope-configuration, python2-zope-configuration) (python-zope-proxy, python2-zope-proxy) (python-zope-location, python2-zope-location) (python-zope-security, python2-zope-security) (python-zope-component, python2-zope-component) (python-ndg-httpsclient, python2-ndg-httpsclient) (python-websocket-client, python2-websocket-client) (python-requests-toolbelt, python2-requests-toolbelt) (python-rauth, python2-rauth, python-urllib3, python2-urllib3) (awscli, python-wsgiproxy2, python2-wsgiproxy2) (python-pastedeploy, python2-pastedeploy) (python-webtest, python2-webtest, python-flask, python2-flask) (python-flast-wtf, python2-flask-wtf) (python-flask-multistatic, python2-flask-multistatic) (python-cookies, python2-cookies) (python-responses, python2-responses) (python-geventhttpclient, python2-geventhttpclient) (python-requests-oauthlib, python2-requests-oauthlib) (python-url, python2-url, python-cachecontrol, python2-cachecontrol) (python-betamax, python2-betamax) (python-betamax-matchers, python2-betamax-matchers) (python-s3transfer, python2-s3transfer) (python-flask-restful, python-flask-basicauth) (python-flask-sqlalchemy, python-flask-restplus) (python-flask-restful-swagger, python-htmlmin, python2-htmlmin) (python-flask-htmlmin, python2-flask-htmlmin) (python-flask-login, python2-flask-login) (python-oauth2client, python-flask-oidc) (python-webassets, python-cssmin, python2-cssmin) (python-elasticsearch, python2-elasticsearch) (python-flask-script, python2-flask-script) (python-flask-migrate, python2-flask-migrate) (python-genshi, python2-genshi) (python-flask-principal, python2-flask-principal) (python-flask-httpauth, python2-flask-httpauth) (python-uritemplate, python2-uritemplate): Move to... * gnu/packages/python-web.scm: ... here. New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/admin.scm, gnu/packages/backup.scm, gnu/packages/dav.scm, gnu/packages/django.scm, gnu/packages/docker.scm, gnu/packages/ebook.scm, gnu/packages/logging.scm, gnu/packages/mail.scm, gnu/packages/music.scm, gnu/packages/openstack.scm, gnu/packages/package-management.scm, gnu/packages/rdf.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/tryton.scm, gnu/packages/version-control.scm, gnu/packages/web-browsers.scm, gnu/packages/web.scm: Adjust accordingly.
* gnu: diamond: Update to 0.9.13.Ben Woodcroft2017-11-14
| | | | * gnu/packages/bioinformatics.scm (diamond): Update to 0.9.13.
* gnu: Move test packages from perl to perl-check.Ricardo Wurmus2017-11-13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/perl.scm (perl-test2-bundle-extended, perl-test2-plugin-nowarnings, perl-test-base, perl-test-class, perl-test-class-most, perl-test-cleannamespaces, perl-test-command, perl-test-cpan-meta, perl-test-cpan-meta-json, perl-test-deep, perl-test-differences, perl-test-directory, perl-test-eol, perl-test-exception, perl-test-fatal, perl-test-file-sharedir-dist, perl-test-files, perl-test-harness, perl-test-leaktrace, perl-test-longstring, perl-test-manifest, perl-test-memory-cycle, perl-test-mockobject, perl-test-mocktime, perl-test-most, perl-test-needs, perl-test-notabs, perl-test-nowarnings, perl-test-number-delta, perl-test-output, perl-test-pod, perl-test-pod-coverage, perl-test-requires, perl-test-script, perl-test-sharedfork, perl-test-simple, perl-test-taint, perl-test-tester, perl-test-trap, perl-test-utf8, perl-test-warn, perl-test-warnings, perl-test-without-module, perl-test-writevariants, perl-test-yaml, perl-test-trailingspace): Move variables to ... * gnu/packages/perl-check.scm: ... this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/admin.scm, gnu/packages/bioinformatics.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/glib.scm, gnu/packages/gnupg.scm, gnu/packages/image-viewers.scm, gnu/packages/language.scm, gnu/packages/networking.scm, gnu/packages/package-management.scm, gnu/packages/perl.scm, gnu/packages/terminals.scm, gnu/packages/tex.scm, gnu/packages/version-control.scm, gnu/packages/web.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm: Use perl-check module.
* gnu: ghc-tls: Move to (gnu packages tls).Ricardo Wurmus2017-11-13
| | | | | | * gnu/packages/haskell.scm (ghc-tls): Move from here... * gnu/packages/tls.scm (ghc-tls): ...to here. * gnu/packages/haskell-web.scm: Use (gnu packages tls).
* gnu: Move crypto packages from haskell to haskell-crypto.Ricardo Wurmus2017-11-13
| | | | | | | | | | | | | * gnu/packages/haskell.scm (ghc-asn1-types, ghc-asn1-encoding, ghc-asn1-parse, ghc-crypto-api, ghc-crypto-api-tests, ghc-cryptohash, ghc-cryptohash-md5, ghc-cryptohash-sha1, ghc-cryptonite, ghc-digest, ghc-entropy, ghc-pem, ghc-puremd5, ghc-sha, ghc-x509, ghc-x509-store, ghc-x509-validation, ghc-x509-system): Move variables to ... * gnu/packages/haskell-crypto.scm: ... this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/haskell.scm, gnu/packages/haskell-web.scm, gnu/packages/version-control.scm: Include haskell-crypto module.
* gnu: Move web packages from haskell to haskell-web.Ricardo Wurmus2017-11-13
| | | | | | | | | | | | | | | * gnu/packages/haskell.scm (ghc-tagsoup, ghc-cookie, ghc-http-types, ghc-http, ghc-http-client, ghc-http-client-tls, ghc-http-date, ghc-http2, ghc-http-conduit, ghc-wai, ghc-wai-logger, ghc-wai-extra, ghc-wai-conduit, ghc-warp, ghc-warp-tls, ghc-xss-sanitize, ghc-css-text, ghc-mime-types, ghc-html, ghc-xhtml, ghc-blaze-html, ghc-aeson, ghc-aeson-pretty, ghc-aeson-qq, ghc-multipart): Move variables to ... * gnu/packages/haskell-web.scm: ... this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/haskell.scm, gnu/packages/idris.scm, gnu/packages/version-control.scm, gnu/packages/wm.scm: Include haskell-web module.
* gnu: Move testing packages from haskell to haskell-check.Ricardo Wurmus2017-11-13
| | | | | | | | | | | | | | | | | * gnu/packages/haskell.scm (ghc-clock-bootstrap, ghc-tasty-ant-xml, ghc-tasty-smallcheck, ghc-tasty-quickcheck, ghc-tasty-golden, ghc-tasty, ghc-tasty-hunit, ghc-tasty-kat, ghc-tasty-th, ghc-tasty-rerun, ghc-quickcheck-instances, ghc-quickcheck-unicode, ghc-quickcheck-io, ghc-quickcheck, ghc-test-framework, ghc-test-framework-hunit, ghc-test-framework-quickcheck2, ghc-test-framework-th, ghc-hunit, hspec-discover, ghc-hspec-core, ghc-hspec-meta, ghc-hspec, ghc-hspec-contrib, ghc-hspec-expectations): Move variables to ... * gnu/packages/haskell-check.scm: ... this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/haskell.scm, gnu/packages/idris.scm, gnu/packages/version-control.scm, gnu/packages/wm.scm: Include haskell-check module.
* gnu: cd-hit: Update source tarball hash.Ricardo Wurmus2017-11-13
| | | | * gnu/packages/bioinformatics.scm (cd-hit)[source]: Update hash.
* Revert "gnu: totem: Enable parallel build."Kei Kebreau2017-11-13
| | | | This reverts commit e5f748a6c0c774265f52c7246ee7b80bec6d3522.
* services: guix: Remove dependency on 'lsof'.Ludovic Courtès2017-11-13
| | | | | | | | | | This is a followup to b8f59cdc20e9d83ce63523ef917e95fcee07f134: 'list-runtime-roots' no longer depends on 'lsof'. * gnu/services/base.scm (<guix-configuration>)[lsof]: Remove. (guix-shepherd-service): Adjust accordingly. * doc/guix.texi (Base Services): Adjust accordingly. * gnu/system.scm (%base-packages): Remove LSOF.
* gnu: guix: Update snapshot.Ludovic Courtès2017-11-13
| | | | * gnu/packages/package-management.scm (guix): Update to ff23b47.
* gnu: ibus: Update to 1.5.17.Efraim Flashner2017-11-13
| | | | * gnu/packages/ibus.scm (ibus): Update to 1.5.17.
* gnu: ibus: Enable wayland support.Efraim Flashner2017-11-13
| | | | | | * gnu/packages/ibus.scm (ibus)[arguments]: Add configure flag to enable wayland support. [inputs]: Add wayland.
* gnu: libsoup: Update to 2.60.2.Kei Kebreau2017-11-12
| | | | * gnu/packages/gnome.scm (libsoup): Update to 2.60.2.
* gnu: imagemagick: Update to 6.9.9-23.Leo Famulari2017-11-12
| | | | * gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-23.
* gnu: Remove unrar.Leo Famulari2017-11-12
| | | | | | | | | | | This package is abandoned upstream and contains serious bugs: http://seclists.org/oss-sec/2017/q3/329 https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14120 https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14121 https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14122 * gnu/packages/compression.scm (unrar): Remove variable.
* gnu: linux-libre: Change URL to HTTPS.Rutger Helling2017-11-12
| | | | | | * gnu/packages/linux.scm (linux-libre): Change URL to HTTPS. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: mupdf: Unbundle mujs.Efraim Flashner2017-11-12
| | | | | * gnu/packages/pdf.scm (mupdf)[source]: Remove bundled mujs. [inputs]: Add mujs.
* gnu: Add mujs.Efraim Flashner2017-11-12
| | | | * gnu/packages/javascript.scm (mujs): New variable.
* gnu: mupdf: Use https.Efraim Flashner2017-11-12
| | | | | * gnu/packages/pdf.scm (mupdf)[source]: Use https. [home-page]: Same.
* gnu: pdf.scm: Arrange modules alphabetically.Efraim Flashner2017-11-12
| | | | * gnu/packages/pdf.scm: Arrange modules alphabetically.
* gnu: lash: Don't build static libraries.Efraim Flashner2017-11-12
| | | | | * gnu/packages/audio.scm (lash)[arguments]: Add configure-flag to disable static libraries.
* gnu: lash: Don't build lashd.Efraim Flashner2017-11-12
| | | | | | This fixes bug#28174. * gnu/packages/audio.scm (lash)[arguments]: Add phase to skip building lashd.
* gnu: glib-networking: Update to 2.54.1.Kei Kebreau2017-11-12
| | | | * gnu/packages/gnome.scm (glib-networking): Update to 2.54.1.
* gnu: ffmpeg: Reduce the size of the closure.Efraim Flashner2017-11-12
| | | | | * gnu/packages/video.scm (ffmpeg)[arguments]: Add new configure flags to disable the html man pages and the static libraries.
* gnu: mupdf: Use Texinfo for the description.Efraim Flashner2017-11-12
| | | | | * gnu/packages/pdf.scm (mupdf)[description]: Use Texinfo to mark up the description.
* gnu: w3m: Find an editor in the environment.Leo Famulari2017-11-11
| | | | | | * gnu/packages/w3m.scm (w3m)[arguments]: Pass an empty value for --with-editor in #:configure-flags. [source]: Use git-file-name.
* gnu: mupdf: Actually fix CVE-2017-15587.Leo Famulari2017-11-11
| | | | | | The original fix could be removed by an optimizing compiler. * gnu/packages/patches/mupdf-CVE-2017-15587.patch: Revise patch.
* gnu: libusb-compat: Use the same home page as libusb.Tobias Geerinckx-Rice2017-11-12
| | | | * gnu/packages/libusb.scm (libusb-compat)[home-page]: Update.
* gnu: fcgi: Fix typo in description.Tobias Geerinckx-Rice2017-11-12
| | | | * gnu/packages/web.scm (fcgi)[description]: Fix typo.
* gnu: fcgi: Use archived home page fork.Tobias Geerinckx-Rice2017-11-12
| | | | * gnu/packages/web.scm (fcgi)[home-page]: Use archived version.
* gnu: lynx: Use new home page.Tobias Geerinckx-Rice2017-11-12
| | | | * gnu/packages/web-browsers.scm (lynx)[home-page]: Update.
* gnu: perl-mime-types: Update to 2.14.Tobias Geerinckx-Rice2017-11-12
| | | | * gnu/packages/perl.scm (perl-mime-types): Update to 2.14.
* gnu: mailutils: Update to 3.4.Ludovic Courtès2017-11-11
| | | | * gnu/packages/mail.scm (mailutils): Update to 3.4.
* gnu: emacs-emms: Update to 4.4.Ludovic Courtès2017-11-11
| | | | * gnu/packages/emacs.scm (emms): Update to 4.4.
* gnu: nyacc: Update to 0.82.4.Jan Nieuwenhuizen2017-11-11
| | | | * gnu/packages/mes.scm (nyacc): Update to 0.82.4.
* gnu: nvi: Build with support for Unicode text.Leo Famulari2017-11-11
| | | | | * gnu/packages/nvi.scm (nvi)[arguments]: Pass '--enable-widechar' to #:configure-flags.
* gnu: lvm2: Update to 2.02.176.Marius Bakke2017-11-11
| | | | * gnu/packages/linux.scm (lvm2): Update to 2.02.176.
* gnu: libstaroffice: Update to 0.0.5.Marius Bakke2017-11-11
| | | | * gnu/packages/libreoffice.scm (libstaroffice): Update to 0.0.5.
* gnu: libvisio: Update to 0.1.6.Marius Bakke2017-11-11
| | | | | | | * gnu/packages/libreoffice.scm (libvisio): Update to 0.1.6. [source](patches): Remove. * gnu/packages/patches/libvisio-fix-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: libetonyek: Update to 0.1.7.Marius Bakke2017-11-11
| | | | | | | | | * gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.7. [source](patches): Remove. [arguments]<#:phases>: Remove. [native-inputs]: Remove AUTOCONF and AUTOMAKE. * gnu/packages/patches/libetonyek-build-with-mdds-1.2.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: libreoffice: Update to 5.3.7.2 and enable GTK3.Rutger Helling2017-11-11
| | | | | | | | | * gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.7.2 [source]: Change URL to HTTPS. [inputs]: Add gtk+. [configure-flags]: Remove "--disable-gtk3". Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: python2-rpython: Update to 0.2.1.Alex Vong2017-11-11
| | | | | | * gnu/packages/python.scm (python2-rpython): Update to 0.2.1. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: python-sympy: Update to 1.1.1.Alex Vong2017-11-11
| | | | | | * gnu/packages/python.scm (python-sympy, python2-sympy): Update to 1.1.1. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: python-sqlparse: Fix syntax error.Marius Bakke2017-11-11
| | | | | | This is a follow-up to commit 8d688cd27f267f4d143d0f20ed3c352188151302. * gnu/packages/python.scm (python-sqlparse)[arguments]: Add missing lambda.
* gnu: python-sqlparse: Update to 0.2.4.Tobias Geerinckx-Rice2017-11-11
| | | | | | * gnu/packages/python.scm (python-sqlparse, python2-sqlparse): Update to 0.2.4. [arguments]: Don't invoke ‘2to3’.
* install: Fix typo.Tobias Geerinckx-Rice2017-11-11
| | | | * gnu/system/install.scm (installation-os): Fix typo in comment.
* gnu: cyrus-sasl: Use new home page.Tobias Geerinckx-Rice2017-11-11
| | | | * gnu/packages/cyrus-sasl.scm (cyrus-sasl)[home-page]: Update.
* gnu: methylkit: Use new home page.Tobias Geerinckx-Rice2017-11-11
| | | | * gnu/packages/bioinformatics.scm (methylkit)[home-page]: Update.
* gnu: vsearch: Update to 2.6.0.Ben Woodcroft2017-11-11
| | | | * gnu/packages/bioinformatics.scm (vsearch): Update to 2.6.0.
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