| Commit message (Expand) | Author | Age |
|---|
| ... | |
| | * | | gnu: ruby-rouge: Update to 3.26.1.•••* gnu/packages/ruby.scm (ruby-rouge): Update to 3.26.1.
| Marius Bakke | 2021-12-12 |
| | * | | gnu: ruby-loofah: Update to 2.13.0.•••* gnu/packages/ruby.scm (ruby-loofah): Update to 2.13.0.
[source]: Switch to GIT-FETCH.
[arguments]: Remove.
[native-inputs]: Add RUBY-HOE-MARKDOWN.
| Marius Bakke | 2021-12-12 |
| | * | | gnu: Add ruby-hoe-markdown.•••* gnu/packages/ruby.scm (ruby-hoe-markdown): New variable.
| Marius Bakke | 2021-12-12 |
| | * | | gnu: ruby-nokogiri: Update to 1.12.5.•••* gnu/packages/ruby.scm (ruby-nokogiri-1.10): New variable.
(ruby-nokogiri): Inherit from it. Update to 1.12.5.
(ruby-nokogiri-diff)[propagated-inputs]: Change from RUBY-NOKOGIRI to
RUBY-NOKOGIRI-1.10.
| Marius Bakke | 2021-12-12 |
| | * | | gnu: python-pyflakes@2.2: Adjust tests for Python 3.9.•••* gnu/packages/patches/python-pyflakes-test-location.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-pyflakes-2.2): Use it.
| Ludovic Courtès | 2021-12-12 |
| | * | | gnu: sundials: Add 'release-monitoring-url' property.•••* gnu/packages/maths.scm (sundials)[properties]: New field.
| Ludovic Courtès | 2021-12-12 |
| | * | | gnu: sundials: Build with '-fcommon'.•••* gnu/packages/maths.scm (sundials)[arguments]: Pass "-DCMAKE_C_FLAGS".
| Ludovic Courtès | 2021-12-12 |
| | * | | gnu: Change source file-name suffix in rust packages.•••* gnu/packages/rust-apps.scm (rust-cbindgen)[source]: Change source
file-name suffix from '.crate' to '.tar.gz'.
* gnu/packages/crates-graphics.scm (rust-ansi-term-0.12): Likewise.
(rust-ansi-term-0.11): Likewise.
(rust-rgb-0.8): Likewise.
* gnu/packages/crates-io.scm (rust-adler32-1): Likewise.
(rust-antidote-1): Likewise.
(rust-atty-0.2): Likewise.
(rust-autocfg-0.1): Likewise.
(rust-backtrace-sys-0.1): Likewise.
(rust-base-x-0.2): Likewise.
(rust-bencher-0.1): Likewise.
(rust-bitflags-1): Likewise.
(rust-blas-sys-0.7): Likewise.
(rust-cargon-0.0): Likewise.
(rust-cblas-sys-0.1): Likewise.
(rust-cc-1): Likewise.
(rust-cfg-if-0.1): Likewise.
(rust-clang-sys-0.26): Likewise.
(rust-clap-2): Likewise.
(rust-clicolors-control-1): Likewise.
(rust-cloudabi-0.1): Likewise.
(rust-cloudabi-0.0): Likewise.
(rust-cmake-0.1): Likewise.
(rust-compiler-builtins-0.1): Likewise.
(rust-constant-time-eq-0.1): Likewise.
(rust-core-foundation-sys-0.6): Likewise.
(rust-data-encoding-2): Likewise.
(rust-defmac-0.2): Likewise.
(rust-defmac-0.1): Likewise.
(rust-dirs-1): Likewise.
(rust-discard-1): Likewise.
(rust-doc-comment-0.3): Likewise.
(rust-dtoa-0.4): Likewise.
(rust-dtoa-0.2): Likewise.
(rust-fallible-iterator-0.2): Likewise.
(rust-filetime-0.2): Likewise.
(rust-findshlibs-0.5): Likewise.
(rust-fixedbitset-0.2): Likewise.
(rust-fixedbitset-0.1): Likewise.
(rust-fnv-1): Likewise.
(rust-foreign-types-shared-0.2): Likewise.
(rust-fs-extra-1): Likewise.
(rust-fuchsia-cprng-0.1): Likewise.
(rust-fuchsia-zircon-0.3): Likewise.
(rust-fuchsia-zircon-sys-0.3): Likewise.
(rust-futures-0.1): Likewise.
(rust-futures-core-preview-0.3): Likewise.
(rust-futures-cpupool-0.1): Likewise.
(rust-futures-io-preview-0.3): Likewise.
(rust-futures-sink-preview-0.3): Likewise.
(rust-getopts-0.2): Likewise.
(rust-glob-0.3): Likewise.
(rust-glob-0.2): Likewise.
(rust-heapsize-0.4): Likewise.
(rust-heapsize-0.3): Likewise.
(rust-heapsize-plugin-0.1): Likewise.
(rust-heck-0.3): Likewise.
(rust-hex-0.3): Likewise.
(rust-hex-0.2): Likewise.
(rust-hostname-0.1): Likewise.
(rust-iovec-0.1): Likewise.
(rust-itoa-0.4): Likewise.
(rust-itoa-0.1): Likewise.
(rust-json-0.11): Likewise.
(rust-kernel32-sys-0.2): Likewise.
(rust-language-tags-0.2): Likewise.
(rust-lazy-static-1): Likewise.
(rust-libloading-0.5): Likewise.
(rust-lock-api-0.1): Likewise.
(rust-log-0.4): Likewise.
(rust-maplit-1): Likewise.
(rust-matches-0.1): Likewise.
(rust-matrixmultiply-0.2): Likewise.
(rust-matrixmultiply-0.1): Likewise.
(rust-md5-0.7): Likewise.
(rust-md5-0.6): Likewise.
(rust-memmap-0.7): Likewise.
(rust-memmap-0.6): Likewise.
(rust-mime-0.3): Likewise.
(rust-miniz-oxide-0.3): Likewise.
(rust-miniz-sys-0.1): Likewise.
(rust-miow-0.3): Likewise.
(rust-miow-0.2): Likewise.
(rust-modifier-0.1): Likewise.
(rust-net2-0.2): Likewise.
(rust-nodrop-0.1): Likewise.
(rust-nodrop-union-0.1): Likewise.
(rust-num-traits-0.1): Likewise.
(rust-numtoa-0.1): Likewise.
(rust-openssl-probe-0.1): Likewise.
(rust-owning-ref-0.4): Likewise.
(rust-parity-wasm-0.40): Likewise.
(rust-peeking-take-while-0.1): Likewise.
(rust-percent-encoding-2): Likewise.
(rust-percent-encoding-1): Likewise.
(rust-permutohedron-0.2): Likewise.
(rust-pico-sys-0.0): Likewise.
(rust-pkg-config-0.3): Likewise.
(rust-plain-0.2): Likewise.
(rust-plugin-0.2): Likewise.
(rust-pocket-resources-0.3): Likewise.
(rust-ppv-lite86-0.2): Likewise.
(rust-proc-macro2-1): Likewise.
(rust-quick-error-2): Likewise.
(rust-quick-error-1): Likewise.
(rust-quote-1): Likewise.
(rust-rand-0.7): Likewise.
(rust-rand-0.6): Likewise.
(rust-rand-0.3): Likewise.
(rust-rand-chacha-0.1): Likewise.
(rust-rand-core-0.4): Likewise.
(rust-rand-core-0.3): Likewise.
(rust-rand-hc-0.2): Likewise.
(rust-rand-hc-0.1): Likewise.
(rust-rand-isaac-0.1): Likewise.
(rust-rand-jitter-0.1): Likewise.
(rust-rand-os-0.1): Likewise.
(rust-rand-pcg-0.3): Likewise.
(rust-rand-pcg-0.2): Likewise.
(rust-rand-pcg-0.1): Likewise.
(rust-rand-xorshift-0.1): Likewise.
(rust-rawpointer-0.2): Likewise.
(rust-rawpointer-0.1): Likewise.
(rust-rdrand-0.4): Likewise.
(rust-redox-syscall-0.1): Likewise.
(rust-redox-termios-0.1): Likewise.
(rust-resolv-conf-0.6): Likewise.
(rust-rustc-demangle-0.1): Likewise.
(rust-rustc-serialize-0.3): Likewise.
(rust-rustc-std-workspace-core-1): Likewise.
(rust-ryu-1): Likewise.
(rust-safemem-0.3): Likewise.
(rust-same-file-1): Likewise.
(rust-schannel-0.1): Likewise.
(rust-scoped-threadpool-0.1): Likewise.
(rust-scoped-tls-1): Likewise.
(rust-scoped-tls-0.1): Likewise.
(rust-scopeguard-1): Likewise.
(rust-scopeguard-0.3): Likewise.
(rust-security-framework-sys-0.3): Likewise.
(rust-semver-parser-0.9): Likewise.
(rust-semver-parser-0.7): Likewise.
(rust-serde-derive-1): Likewise.
(rust-shlex-1): Likewise.
(rust-shlex-0.1): Likewise.
(rust-slab-0.4): Likewise.
(rust-socket2-0.3): Likewise.
(rust-sourcefile-0.1): Likewise.
(rust-spin-0.5): Likewise.
(rust-stacker-0.1): Likewise.
(rust-static-assertions-1): Likewise.
(rust-static-assertions-0.3): Likewise.
(rust-stdweb-internal-runtime-0.1): Likewise.
(rust-stdweb-internal-test-macro-0.1): Likewise.
(rust-streaming-stats-0.2): Likewise.
(rust-strsim-0.9): Likewise.
(rust-strsim-0.8): Likewise.
(rust-synstructure-test-traits-0.1): Likewise.
(rust-tar-0.4): Likewise.
(rust-tempdir-0.3): Likewise.
(rust-tempfile-3): Likewise.
(rust-term-0.4): Likewise.
(rust-term-0.2): Likewise.
(rust-termcolor-1): Likewise.
(rust-termion-1): Likewise.
(rust-termios-0.3): Likewise.
(rust-thread-id-3): Likewise.
(rust-thread-local-1): Likewise.
(rust-thread-local-0.3): Likewise.
(rust-threadpool-1): Likewise.
(rust-time-0.1): Likewise.
(rust-tokio-mock-task-0.1): Likewise.
(rust-toml-0.5): Likewise.
(rust-tracing-core-0.1): Likewise.
(rust-traitobject-0.1): Likewise.
(rust-try-from-0.3): Likewise.
(rust-try-lock-0.2): Likewise.
(rust-typeable-0.1): Likewise.
(rust-typemap-0.3): Likewise.
(rust-typenum-1): Likewise.
(rust-ucd-trie-0.1): Likewise.
(rust-ucd-util-0.1): Likewise.
(rust-unicode-xid-0.2): Likewise.
(rust-unicode-xid-0.1): Likewise.
(rust-unreachable-1): Likewise.
(rust-unsafe-any-0.4): Likewise.
(rust-untrusted-0.7): Likewise.
(rust-vcpkg-0.2): Likewise.
(rust-vec-map-0.8): Likewise.
(rust-version-check-0.9): Likewise.
(rust-version-check-0.1): Likewise.
(rust-void-1): Likewise.
(rust-wasi-0.5): Likewise.
(rust-wasm-bindgen-shared-0.2): Likewise.
(rust-wasm-bindgen-test-macro-0.2): Likewise.
(rust-widestring-0.4): Likewise.
(rust-winapi-0.3): Likewise.
(rust-winapi-0.2): Likewise.
(rust-winapi-build-0.1): Likewise.
(rust-winapi-util-0.1): Likewise.
(rust-wincolor-1): Likewise.
(rust-winutil-0.1): Likewise.
(rust-ws2-32-sys-0.2): Likewise.
(rust-xattr-0.2): Likewise.
(rust-xdg-2): Likewise.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Z572 | 2021-12-12 |
| | * | | gnu: Use librsvg-bootstrap.•••* gnu/packages/emacs.scm (emacs)[inputs]: Use librsvg-bootstrap.
* gnu/pacakges/gtk.scm (gtk+-2, gtk+)[propagated-inputs]: Same.
| Efraim Flashner | 2021-12-12 |
| | * | | gnu: Add librsvg-bootstrap.•••* gnu/packages/gnome.scm (librsvg-bootstrap): New variable.
| Efraim Flashner | 2021-12-12 |
| | * | | gnu: go-1.14: Fix building on some platforms.•••* gnu/packages/golang.scm (go-1.14)[arguments]: In custom 'prebuild
phase also search for loader without 'linux' in the string. In custom
'build phase set the GOCACHE directory.
[native-inputs]: On systems which don't have support in go-1.4 use
gccgo-10 instead.
| Efraim Flashner | 2021-12-12 |
| | * | | gnu: python-patsy: Update to 0.5.2.•••* gnu/packages/statistics.scm (python-patsy): Update to 0.5.2.
[arguments]: Run tests conditionally; run tests with pytest.
[native-inputs]: Replace python-nose with python-pytest.
| Ricardo Wurmus | 2021-12-12 |
| | * | | gnu: remmina: Build with libsoup 2.•••* gnu/packages/vnc.scm (remmina)[inputs]: Replace libsoup with
libsoup-minimal-2.
| Ricardo Wurmus | 2021-12-12 |
| | * | | gnu: salmon: Update to 1.6.0.•••* gnu/packages/bioinformatics.scm (salmon): Update to 1.6.0.
[inputs]: Update pufferfish sources.
| Ricardo Wurmus | 2021-12-12 |
| | * | | Merge remote-tracking branch 'signed/master' into core-updates | Mathieu Othacehe | 2021-12-10 |
| | |\ \ |
|
| | * | | | gnu: gnome-maps: Upgrade to 41.2.•••* gnu/packages/geo.scm (gnome-maps): Upgrade to 41.2.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Vivien Kraus | 2021-12-10 |
| | * | | | gnu: gnome-maps: Build with libsoup 2.•••* gnu/packages/geo.scm (gnome-maps) [inputs]: Use libsoup-minimal-2 instead of
libsoup and webkitgtk-with-libsoup2 instead of webkitgtk.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Vivien Kraus | 2021-12-10 |
| | * | | | gnu: cdrkit-libre: Fix cross-compiling.•••* gnu/packages/cdrom.scm (cdrkit-libre)[source]: Add patch.
* gnu/packages/patches/cdrkit-libre-cross-compile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
| Efraim Flashner | 2021-12-10 |
| | * | | | gnu: dosfstools: Fix cross-compilation.•••Reported by Florian Hoertlehner.
* gnu/packages/disk.scm (dosfstools)[arguments]: Correctly refer to the
build output. Use cc-for-target.
| Efraim Flashner | 2021-12-10 |
| | * | | | gnu: pplacer: Fix build.•••* gnu/packages/bioinformatics.scm (pplacer)[inputs]: Replace gsl with
gsl-static.
* gnu/packages/ocaml.scm (ocaml4.07-gsl-1)[inputs]: Same.
| Efraim Flashner | 2021-12-09 |
| | * | | | gnu: Add gsl-static.•••* gnu/packages/maths.scm (gsl-static): New variable.
| Efraim Flashner | 2021-12-09 |
| | * | | | gnu: python-dendropy: Skip additional test.•••* gnu/packages/bioinformatics.scm (python-dendropy)[arguments]: Adjust
custom 'skip-broken-tests phase to skip additional test.
| Efraim Flashner | 2021-12-09 |
| | * | | | gnu: imp: Build with default cmake.•••* gnu/packages/bioinformatics.scm (imp)[arguments]: Remove cmake flag.
| Efraim Flashner | 2021-12-09 |
| | * | | | gnu: repeat-masker: Update to 4.1.2-p1.•••* gnu/packages/bioinformatics.scm (repeat-masker): Update to 4.1.2-p1.
| Ricardo Wurmus | 2021-12-09 |
| | * | | | gnu: metabat: Update to 2.15.•••* gnu/packages/bioinformatics.scm (metabat): Update to 2.15.
[source]: Remove patch.
[build-system]: Use cmake-build-system.
[arguments]: Adjust to new build system.
* gnu/packages/patches/metabat-fix-compilation.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
| Ricardo Wurmus | 2021-12-09 |
| | * | | | gnu: python2-scikit-learn: Disable one more test.•••* gnu/packages/machine-learning.scm (python2-scikit-learn)[arguments]: Do not
inherit; remove obsolete 'make-files-writable phase; disable one more failing
test in 'check phase.
| Ricardo Wurmus | 2021-12-09 |
| | * | | | gnu: seek: Update to 1-1.196ed4c.•••* gnu/packages/bioinformatics.scm (seek): Update to 1-1.196ed4c.
[source]: Fetch from github.
[build-system]: Use cmake-build-system.
[arguments]: Remove all custom phases; replace 'check phase; disable tests;
set configure flags.
[inputs]: Add apache-thrift:include, apache-thrift:lib, and python.
[native-inputs]: Remove autoconf, automake, and perl; add pkg-config.
| Ricardo Wurmus | 2021-12-09 |
| | * | | | gnu: libsvm: Install header and library.•••* gnu/packages/machine-learning.scm (libsvm)[arguments]: Add build phase
'build-lib; also install header file and shared library in the 'install phase.
| Ricardo Wurmus | 2021-12-09 |
| | * | | | gnu: miso: Update to 0.5.4-1.b714021.•••* gnu/packages/bioinformatics.scm (miso): Update to 0.5.4-1.b714021.
[source]: Fetch via git; simplify snippet.
[inputs]: Replace samtools with samtools-1.2.
[home-page]: Update to new location.
| Ricardo Wurmus | 2021-12-09 |
| | * | | | gnu: Add samtools-1.2.•••* gnu/packages/bioinformatics.scm (samtools-1.2): New variable.
| Ricardo Wurmus | 2021-12-09 |
| | * | | | gnu: Add htslib-for-samtools-1.2.•••* gnu/packages/bioinformatics.scm (htslib-for-samtools-1.2): New variable.
| Ricardo Wurmus | 2021-12-09 |
| | * | | | gnu: python2-scipy: Override native inputs.•••* gnu/packages/python-science.scm (python2-scipy)[native-inputs]: Override;
replace gfortran with gfortran-7; add gcc-7.
| Ricardo Wurmus | 2021-12-09 |
| | * | | | gnu: python2-matplotlib: Fix mpl_toolkits module.•••* gnu/packages/python-xyz.scm (python2-matplotlib)[arguments]: Add phase
'create-init-file; restore 'sanity-check phase.
| Ricardo Wurmus | 2021-12-09 |
| | * | | | gnu: Add gfortran-7.•••* gnu/packages/gcc.scm (gfortran-7): New variable.
| Ricardo Wurmus | 2021-12-09 |
| | * | | | gnu: python-slepc4py: Update to 3.16.1.•••This is a followup 5b4d1e57b6d4931f6ee2a50abf84222fe015d045.
* gnu/packages/maths.scm (slepc-openmpi)[inputs]: Move ARPACK-NG-OPENMPI to...
[propagated-inputs]: ... here.
(python-slepc4py): Update to 3.16.1.
| Ludovic Courtès | 2021-12-08 |
| | * | | | gnu: python-petsc4py: Update to 3.16.1.•••This is a followup to 07ac13a26a0d7c8319afb42c55fc2116ec44668f.
* gnu/packages/maths.scm (python-petsc4py): Update to 3.16.1.
| Ludovic Courtès | 2021-12-08 |
| | * | | | gnu: geeqie: Fix X11 error at startup.•••Fixes <https://issues.guix.gnu.org/52089>.
Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>.
Patch provided by John Kehayias <john.kehayias@protonmail.com>.
* gnu/packages/patches/geeqie-clutter.patch: New file.
* gnu/packages/image-viewers.scm (geeqie)[sources]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
| Ludovic Courtès | 2021-12-08 |
| | * | | | gnu: mumps: Allow compilation with GCC 10.•••Following the suggestion at
<https://community.freefem.org/t/compline-on-macos-10-15-6/543>.
* gnu/packages/maths.scm (mumps)[arguments]: In 'configure' phase, add
'-fallow-argument-mismatch' to 'OPTF'.
| Ludovic Courtès | 2021-12-08 |
| | * | | | services: %desktop-services: Use SDDM rather than GDM on non-x86_64.•••This works around the fact that Rust is currently unavailable in Guix on
platforms other than x86_64-linux:
https://lists.gnu.org/archive/html/guix-devel/2021-11/msg00197.html
* gnu/services/desktop.scm (desktop-services-for-system): New
procedure.
(%desktop-services): Turn into a macro.
| Ludovic Courtès | 2021-12-08 |
| | * | | | system: Mark 'services' field as thunked.•••This allows us to make services dependent on (%current-system), for
example.
* gnu/system.scm (<operating-system>)[services]: Mark as thunked.
| Ludovic Courtès | 2021-12-08 |
| | * | | | gnu: idutils: Fix build with glibc 2.33.•••* gnu/packages/idutils.scm (idutils)[source]: Remove reference to 'gets'
from "lib/stdio.in.h".
| Ludovic Courtès | 2021-12-08 |
| | * | | | gnu: libtorrent-rasterbar: Build with default cmake.•••* gnu/packages/bittorrent.scm (libtorrent-rasterbar)[arguments]: Remove
cmake flag.
| Efraim Flashner | 2021-12-08 |
| | * | | | gnu: tadbit: Update to 1.0.1-1.5c4c1dd.•••* gnu/packages/bioinformatics.scm (tadbit): Update to 1.0.1-1.5c4c1dd.
[arguments]: Remove trailing #T from build phases; pass -fcommon to test
binaries; run tests conditionally.
| Ricardo Wurmus | 2021-12-08 |
| | * | | | gnu: python2-sphinx: Remove websupport test.•••* gnu/packages/sphinx.scm (python2-sphinx)[arguments]: Remove websupport test
file.
| Ricardo Wurmus | 2021-12-08 |
| | * | | | gnu: python2-sphinxcontrib-websupport: Downgrade to 1.1.2.•••* gnu/packages/sphinx.scm (python2-sphinxcontrib-websupport): Downgrade to
1.1.2.
[arguments]: Override; delete 'sanity-check phase.
[propagated-inputs]: Override and add python2-six.
(python-sphinxcontrib-websupport)[properties]: Record python2-variant.
| Ricardo Wurmus | 2021-12-08 |
| | * | | | gnu: python2-jinja2: Downgrade to 2.11.3•••* gnu/packages/python-xyz.scm (python2-jinja2): Downgrade to the last version
supporting Python 2.
(python-jinja2)[properties]: Record python2-variant.
| Ricardo Wurmus | 2021-12-08 |
| | * | | | gnu: python2-markupsafe: Downgrade to 1.1.1.•••* gnu/packages/python-xyz.scm (python2-markupsafe): Downgrade to 1.1.1,
because that's the last version to support Python 2.
| Ricardo Wurmus | 2021-12-08 |
| | * | | | gnu: ocaml-mcl: Add -fcommon to compiler flags.•••* gnu/packages/machine-learning.scm (ocaml-mcl)[arguments]: Add -fcommon.
| Ricardo Wurmus | 2021-12-08 |
| | * | | | gnu: paml: Pass -fcommon to compiler.•••* gnu/packages/bioinformatics.scm (paml)[arguments]: Set CFLAGS.
| Ricardo Wurmus | 2021-12-08 |
| | * | | | gnu: paml: Remove trailing #T.•••* gnu/packages/bioinformatics.scm (paml)[arguments]: Remove trailing #T from
build phases.
| Ricardo Wurmus | 2021-12-08 |