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* Merge branch 'master' into core-updatesMarius Bakke2017-12-19
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| * gnu: termite: Update to 13.Marius Bakke2017-12-19
| | | | | | | | * gnu/packages/terminals.scm (termite): Update to 13.
| * gnu: pcsc-lite: Update to 1.8.23.Marius Bakke2017-12-19
| | | | | | | | | | | | * gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.23. [arguments]<#:configure-flags>: Add "--disable-libsystemd". [license]: Adjust to removed sd-daemon files.
| * gnu: qemu: Update to 2.10.2.Marius Bakke2017-12-19
| | | | | | | | | | | | | | | | | | * gnu/packages/patches/qemu-CVE-2017-15118.patch, gnu/packages/patches/qemu-CVE-2017-15119.patch, gnu/packages/patches/qemu-CVE-2017-15268.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/virtualization.scm (qemu): Update to 2.10.2. [source](patches): Remove obsolete.
| * gnu: libjpeg-turbo: Update to 1.5.3.Marius Bakke2017-12-18
| | | | | | | | * gnu/packages/image.scm (libjpeg-turbo): Update to 1.5.3.
| * gnu: libsodium: Update to 1.0.16.Marius Bakke2017-12-18
| | | | | | | | * gnu/packages/crypto.scm (libsodium): Update to 1.0.16.
| * gnu: expect: Update to 5.45.3.Marius Bakke2017-12-18
| | | | | | | | * gnu/packages/tcl.scm (expect): Update to 5.45.3.
| * gnu: deutex: Update to 5.1.0.Kei Kebreau2017-12-18
| | | | | | | | * gnu/packages/games.scm (deutex): Update to 5.1.0.
| * gnu: emacspeak: Update to 47.0.Kei Kebreau2017-12-18
| | | | | | | | | | | | * gnu/packages/emacs.scm (emacspeak): Update to 47.0. [source]: Remove snippet. [arguments]: Set SHELL environment variable.
| * gnu: rsync: Patch CVE-2017-{16548,17433,17434}.Efraim Flashner2017-12-18
| | | | | | | | | | | | | | | | | | | | | | * gnu/packages/rsync.scm (rsync)[source]: Add patches. [properties]: Mark CVE-2017-15994 as not relevant. * gnu/packages/patches/rsync-CVE-2017-16548.patch, gnu/packages/patches/rsync-CVE-2017-17433.patch, gnu/packages/patches/rsync-CVE-2017-17433-fix-tests.patch, gnu/packages/patches/rsync-CVE-2017-17434-pt1.patch, gnu/packages/patches/rsync-CVE-2017-17434-pt2.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
| * gnu: psm: Update home page URL.Ludovic Courtès2017-12-18
| | | | | | | | | | * gnu/packages/linux.scm (psm)[home-page]: Update. [source](uri): Use it.
| * gnu: Fix ambiguous 'zip' reference.Ludovic Courtès2017-12-18
| | | | | | | | * gnu/packages/photo.scm: Hide 'zip' from (srfi srfi-1).
| * system: examples: Add a template for BeagleBone Black.Mathieu Othacehe2017-12-18
| | | | | | | | | | | | * gnu/system/examples/beaglebone-black.tmpl: New file. * Makefile.am (EXAMPLES): Add it. * gnu/system/install.scm (/etc/configuration-files): Add it.
| * gnu: claws-mail: Update to 3.16.0.Tobias Geerinckx-Rice2017-12-18
| | | | | | | | * gnu/packages/mail.scm (claws-mail): Update to 3.16.0.
| * services: nginx: Allow to add raw content to the server blocks.Clément Lassieur2017-12-18
| | | | | | | | | | | | * doc/guix.texi (Web Services): Document 'raw-content'. * gnu/services/web.scm (<nginx-server-configuration>)[raw-content]: New field. (emit-nginx-server-config): Add it.
| * services: nginx: Replace 'http-port' and 'https-port' with 'listen'.Clément Lassieur2017-12-18
| | | | | | | | | | | | | | | | | | | | | | * doc/guix.texi (Web Services, Version Control Services): Update accordingly. * gnu/services/certbot.scm (certbot-nginx-server-configurations): Likewise. * gnu/services/version-control.scm (%cgit-configuration-nginx): Likewise. * gnu/services/web.scm (<nginx-server-configuration>, emit-nginx-server-config): Likewise. * gnu/tests/version-control.scm (%cgit-configuration-nginx, %git-nginx-configuration): Likewise. * gnu/tests/web.scm (%nginx-servers, %php-fpm-nginx-server-blocks): Likewise.
| * gnu: r-seurat: Update to 2.1.0.Ricardo Wurmus2017-12-18
| | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (r-seurat): Update to 2.1.0. [propagated-inputs]: Add r-diffusionmap, r-dtw, r-ggjoy, r-hmisc, r-ica, r-mass, r-matrix, r-nmf, r-plotly, r-sdmtools, r-tidyr; remove r-plyr, r-rcppeigen, r-fastica.
| * gnu: Add r-diffusionmap.Ricardo Wurmus2017-12-18
| | | | | | | | * gnu/packages/graph.scm (r-diffusionmap): New variable.
| * gnu: Add r-ggjoy.Ricardo Wurmus2017-12-18
| | | | | | | | * gnu/packages/cran.scm (r-ggjoy): New variable.
| * gnu: Add r-ggridges.Ricardo Wurmus2017-12-18
| | | | | | | | * gnu/packages/cran.scm (r-ggridges): New variable.
| * gnu: Add r-scatterplot3d.Ricardo Wurmus2017-12-18
| | | | | | | | * gnu/packages/cran.scm (r-scatterplot3d): New variable.
| * gnu: Add r-sdmtools.Ricardo Wurmus2017-12-18
| | | | | | | | * gnu/packages/cran.scm (r-sdmtools): New variable.
| * gnu: Add r-dtw.Ricardo Wurmus2017-12-18
| | | | | | | | * gnu/packages/cran.scm (r-dtw): New variable.
| * gnu: Add r-ica.Ricardo Wurmus2017-12-18
| | | | | | | | * gnu/packages/cran.scm (r-ica): New variable.
| * gnu: r-seurat: Fix ModularityOptimizer.jar.Ricardo Wurmus2017-12-18
| | | | | | | | | | * gnu/packages/bioinformatics.scm (r-seurat)[arguments]: Include Main-Class attribute in manifest.
| * gnu: qmidiarp: Update to 0.6.5.Ricardo Wurmus2017-12-18
| | | | | | | | * gnu/packages/music.scm (qmidiarp): Update to 0.6.5.
| * gnu: Add noise-repellent.Ricardo Wurmus2017-12-18
| | | | | | | | * gnu/packages/audio.scm (noise-repellent): New variable.
| * gnu: Add aj-snapshot.Ricardo Wurmus2017-12-18
| | | | | | | | * gnu/packages/music.scm (aj-snapshot): New variable.
| * gnu: Add jack-capture.Ricardo Wurmus2017-12-18
| | | | | | | | * gnu/packages/music.scm (jack-capture): New variable.
| * gnu: Add qjackrcd.Ricardo Wurmus2017-12-18
| | | | | | | | * gnu/packages/audio.scm (qjackrcd): New variable.
| * gnu: Add whysynth.Ricardo Wurmus2017-12-18
| | | | | | | | * gnu/packages/music.scm (whysynth): New variable.
| * gnu: Add sonivox-eas.Ricardo Wurmus2017-12-18
| | | | | | | | * gnu/packages/music.scm (sonivox-eas): New variable.
| * vm: Pass the host's /dev/urandom to the guest at /dev/hwrng.Leo Famulari2017-12-18
| | | | | | | | | | * gnu/build/vm.scm (load-in-linux-vm): Use QEMU's virtio-rng-pci. * gnu/system/vm.scm (common-qemu-options): Likewise.
| * gnu: openssl: Update replacement to 1.0.2n [fixes CVE-2017-{3737,3738}].Mark H Weaver2017-12-17
| | | | | | | | | | | | * gnu/packages/tls.scm (openssl)[replacement]: Use openssl-1.0.2n. (openssl-1.0.2m): Replace with ... (openssl-1.0.2n): ... this updated version. Update comment.
| * gnu: Add mod-wsgi.Christopher Baines2017-12-17
| | | | | | | | * gnu/packages/web.scm (mod-wsgi): New variable.
| * gnu: system: vm: Use loose cache for 9p file system.Christopher Baines2017-12-17
| | | | | | | | | | | | | | This improves the performance of the shared store for operations involving lots of files, e.g. searching through the store. * gnu/system/vm.scm (mapping->file-system): Add cache=loose to options.
| * gnu: grammalecte: Fix 'license' field.Ludovic Courtès2017-12-17
| | | | | | | | | | * gnu/packages/dictionaries.scm (grammalecte)[license]: Change name to 'gpl3+'.
| * services: certbot: Fix certbot renewal job.Christopher Baines2017-12-17
| | | | | | | | | | | | | | Quote the list of hosts, to avoid generating a broken job definition. * gnu/services/certbot.scm (certbot-renewal-jobs): Quote the hosts when passing them in to the job gexp.
| * gnu: Add grammalecte.Nicolas Goaziou2017-12-17
| | | | | | | | * gnu/packages/dictionaries.scm (grammalecte): New variable.
| * gnu: gourmet: Fix runtime failure and enhance plugin.Mark Meyer2017-12-17
| | | | | | | | | | | | | | | | | | | | Fixes <https://bugs.gnu.org/29227>. Reported by Caleb Herbert <csh@bluehome.net>. * gnu/packages/nutrition.scm (gourmet)[inputs]: Add python-lxml. [arguments]: Custom install phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: pinentry-tty: Add meta-data for 'guix refresh'.Ludovic Courtès2017-12-17
| | | | | | | | * gnu/packages/gnupg.scm (pinentry-tty)[properties]: New field.
| * services: cleanup: Remove "/run/udev/watch.old" directory.Danny Milosavljevic2017-12-17
| | | | | | | | * gnu/services.scm (cleanup-gexp): Remove "/run/udev/watch.old" directory.
| * gnu: global: Update to 6.6.1 [fixes CVE-2017-17531].Efraim Flashner2017-12-17
| | | | | | | | * gnu/packages/code.scm (global): Update to 6.6.1.
| * gnu: python-dulwich: Update to 0.18.6 [fixes CVE-2017-16228].Leo Famulari2017-12-16
| | | | | | | | * gnu/packages/python.scm (python-dulwich, python2-dulwich): Update to 0.18.6.
| * gnu: krita: Enhance krita.Mark Meyer2017-12-16
| | | | | | | | | | | | | | | | * gnu/packages/kde.scm (krita)[inputs]: Add libjpeg-turbo, ilmbase and openexr. [native-inputs]: Add vc. [arguments]: Set path to headers for ilmbase. Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
| * gnu: borg: Fix a data loss bug.Leo Famulari2017-12-16
| | | | | | | | | | | | | | | | See <https://github.com/borgbackup/borg/issues/3444> for more information. * gnu/packages/patches/borg-fix-archive-corruption-bug.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/backup.scm (borg)[source]: Use it.
| * gnu: guix: Update snapshot to 02345c.Mathieu Othacehe2017-12-16
| | | | | | | | * gnu/packages/package-management.scm (guix): Update to 02345c.
| * gnu: lookingglass: Limit to Intel compatable systems.Efraim Flashner2017-12-16
| | | | | | | | | | * gnu/packages/virtualization.scm (lookingglass)[supported-systems]: New field.
| * gnu: gx-saturator-lv2: Update to 0-3.605330f43.Ricardo Wurmus2017-12-16
| | | | | | | | * gnu/packages/music.scm (gx-saturator-lv2): Update to 0-3.605330f43.
| * gnu: gx-slow-gear-lv2: Update to 0-3.5d37e775b.Ricardo Wurmus2017-12-16
| | | | | | | | * gnu/packages/music.scm (gx-slow-gear-lv2): Update to 0-3.5d37e775b.
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