| Commit message (Collapse) | Author | Age |
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* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.3.
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* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.2.
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* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.3.
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* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.8.4.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.2.
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* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.3.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.5.
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* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.2.
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* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Add gs.
This is a follow-up to commit d8eb912132ccdff955e3318fe549c5f7f674adf8.
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* gnu/packages/patches/mysql-fix-failing-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (mysql): Update to 5.7.13.
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* gnu/packages/code.scm(the-silver-searcher): Update to 0.32.0.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-3.
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* gnu/packages/databases.scm (mariadb): Update to 10.1.16.
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* gnu/packages/ebook.scm (calibre): Update to 2.63.0.
[inputs]: Remove unnecessary imagemagick dependency.
[phases]: Use modify-phases.
* gnu/packages/patches/calibre-drop-unrar.patch: Update
for new version.
Signed-off-by: Roel Janssen <roel@gnu.org>
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* gnu/packages/web.scm (krona-tools): Update to 2.7.
[arguments]: Delete 'build' phase. Install new scripts.
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* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.16.
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This is a follow-up to commit 95af24a2f1fb58eb9e6ee902c9330534f0aca9f3.
Reported by Alex Kost <alezost@gmail.com>.
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* gnu/packages/emacs.scm (magit)[inputs]: Add 'perl'.
[arguments]: Adjust 'patch-exec-paths' phase to make some rebase
commands find 'perl'.
Signed-off-by: Alex Kost <alezost@gmail.com>
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* gnu/packages/networking.scm (httping): New variable.
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* gnu/packages/networking.scm: Add missing "©" to header comments.
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* gnu/packages/mail.scm (gmime)[arguments]: Remove the substitution which
previously changed 'gpg' to 'gpg2' in 'patch-paths-in-tests' phase.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/admin.scm (dmd): Remove variable.
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* gnu/packages/databases.scm (perl-db_file): New variable.
Signed-off-by: Andreas Enge <andreas@enge.fr>
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* gnu/packages/gnuzilla.scm (icecat)[arguments]: Add
'install-icons' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/linux.scm (haveged): New variable.
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* gnu/packages/image.scm (perceptualdiff): New variable.
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* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.28.
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* gnu/packages/linux.scm (linux-libre): Update to 4.7.
* gnu/packages/linux-libre-4.7-x86_64.conf,
gnu/packages/linux-libre-4.7-i686.conf: New files.
* gnu/packages/linux-libre-4.6-x86_64.conf,
gnu/packages/linux-libre-4.6-i686.conf: Delete files.
* Makefile.am (KCONFIGS): Update accordingly.
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* gnu/packages/ebook.scm (calibre)[native-inputs]: Replace QTBASE by QT.
[inputs]: Replace QTBASE by QT and PYTHON2-PYQT by PYTHON2-PYQT-5.5.
This essentially reverts commit 76806c54ed72f8f04079bbb187b186b833c103e1.
Reported by Roel Janssen <roel@gnu.org>.
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* gnu/packages/qt.scm (python-pyqt-5.5, python2-pyqt-5.5): New variables.
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* gnu/packages/package-management.scm (guix-devel): Update to 97c8aef.
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This amends 8b732bf6d93ad2cb529c3c5f886efe2625c5fb72 and avoids a
rebuild.
* gnu/packages/python.scm (python-2.7)[arguments] <pre-check>:
When (%current-system) starts with "mips64el", delete
Lib/test/test_ctypes.py.
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* gnu/packages/python.scm (python-2.7)[source]: In a snippet, remove
an additional test that fails on mips64el-linux.
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* gnu/packages/engineering.scm (lout)[native-inputs]: Add ghostscript-gs.
This is a follow-up to commit d8eb912132ccdff955e3318fe549c5f7f674adf8.
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* gnu/packages/lout.scm (lout)[native-inputs]: Add ghostscript, needed for ps2pdf.
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* gnu/packages/lout.scm (lout)[inputs]: Move to native-inputs.
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* gnu/packages/engineering.scm (lout)[inputs]: Replace GHOSTSCRIPT by
GHOSTSCRIPT-GS.
This is a follow-up to commit d8eb912132ccdff955e3318fe549c5f7f674adf8.
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Reported by Andreas Enge <andreas@enge.fr>
at <https://lists.gnu.org/archive/html/guix-devel/2016-07/msg01018.html>.
* gnu/packages/maths.scm (lpsolve)[source]: Augment 'snippet'.
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* gnu/packages/maths.scm (lpsolve)[arguments]: In 'build' phase, check
the return value of 'system*' and honor it.
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* gnu/packages/engineering.scm (fastcap)[native-inputs]: Replace GHOSTSCRIPT
by GHOST_SCRIPT-GS.
This is a follow-up to commit d8eb912132ccdff955e3318fe549c5f7f674adf8.
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* gnu/packages/emacs.scm (emacs-solarized-theme)[propagated-inputs]:
Remove 'emacs-f' and 'emacs-s'.
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Reported by Ricardo Wurmus on #guix.
* gnu/packages/emacs.scm (emacs)[arguments]: Put "site-start.el" in
"/share/emacs/site-lisp" instead of "/share/emacs/<version>/site-lisp"
to let inherited package with another version find it.
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* gnu/packages/guile.scm (guile-daemon): New variable.
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* gnu/packages/guile.scm (guile-xosd): New variable.
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* gnu/packages/xdisorg.scm (xdpyprobe): New variable.
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* gnu/packages/xorg.scm (mkfontdir)[propagated-inputs]: Move
'mkfontscale' to ...
[inputs]: ... here.
[arguments]: Add 'wrap-mkfontdir' phase.
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* gnu/packages/xorg.scm (xfd): New variable.
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* gnu/packages/xorg.scm (xfontsel): New variable.
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