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* gnu: Add python-pytest-nunit.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/check.scm (python-pytest-nunit): New variable. Change-Id: Ic67c973460f09b15bf683f70040a3f5e4381108d
* gnu: python-seaborn: Update to 0.13.1.Ricardo Wurmus2024-01-16
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-seaborn): Update to 0.13.1. [propagated-inputs]: Add python-ipykernel, python-mypy, python-nbconvert, python-numpydoc, python-pyyaml, and python-statsmodels. [native-inputs]: Add python-flake8, python-pre-commit, python-pytest-cov, and python-pytest-xdist; remove python-pypa-build. Change-Id: Id1ed6cfaf7e0950e99c06900fd68fb1ab884bee0
* gnu: python-matplotlib: Update to 3.8.2.Ricardo Wurmus2024-01-16
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.8.2. [build-system]: Use pyproject-build-system. [arguments]: Enable more tests; simplify custom 'check phase. [propagated-inputs]: Remove gobject-introspection, python-cairocffi, python-certifi, python-pygobject, python-pytz, python-six, and python-wxpython; add python-contourpy and python-importlib-resources. [native-inputs]: Add pybind11. Change-Id: Ie34826882fdcc20fac3b09130bcd0f4ad4f76b07
* gnu: Add python-contourpy.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (python-contourpy): New variable. Change-Id: Icbbe4a358242095fae36639c5c039c029eea4ee3
* gnu: python-kiwisolver: Update to 1.4.5.Ricardo Wurmus2024-01-16
| | | | | | | | | * gnu/packages/maths.scm (python-kiwisolver): Update to 1.4.5. [build-system]: Use pyproject-build-system. [propagated-inputs]: Add python-typing-extension. [native-inputs]: Add python-cppy, python-pytest, and python-setuptools-scm. Change-Id: Iea75440dc58fa342dcf4a2a381b6dcc17e71e618
* gnu: Add python-cppy.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (python-cppy): New variable. Change-Id: I584fcddc3430960098d65f1916278a7473249a87
* gnu: python-umap-learn: Update to 0.5.5.Ricardo Wurmus2024-01-16
| | | | | | | | * gnu/packages/machine-learning.scm (python-umap-learn): Update to 0.5.5. [build-system]: Use pyproject-build-system. [arguments]: Remove 'numpy-compatibility and custom 'check phases. Change-Id: I2123f66519730d43e454d9536e8cb7b6c4569d56
* gnu: python-pynndescent: Update to 0.5.11.Ricardo Wurmus2024-01-16
| | | | | | | | | * gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.11. [build-system]: Use pyproject-build-system. [arguments]: Remove. [propagated-inputs]: Add python-importlib-metadata. Change-Id: I14f15ea98157ed15b360971c30fe00c5f00af4a7
* gnu: python-scikit-learn: Update to 1.3.2.Ricardo Wurmus2024-01-16
| | | | | | | | | * gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.3.2. [build-system]: Use pyproject-build-system. [arguments]: Move test flags to #:test-flags. [native-inputs]: Replace python-cython with python-cython-0.29.35. Change-Id: Iac6107dae752c42d9f57448a66eed0526974d57e
* gnu: python-matplotx: Disable test_png test.Ricardo Wurmus2024-01-16
| | | | | | | * gnu/packages/python-xyz.scm (python-matplotx)[arguments]: Disable test_png test. Change-Id: I19a954786d828a1b717c9c4021ad7f5c6172366c
* gnu: python-pypng: Update to 0.20220715.0.Ricardo Wurmus2024-01-16
| | | | | | | | | * gnu/packages/python-xyz.scm (python-pypng): Update to 0.20220715.0. [build-system]: Use pyproject-build-system. [arguments]: Add 'pre-check phase. [native-inputs]: Add python-pytest. Change-Id: Ic47c653f94a688048383eba216f01d7987625680
* gnu: python-scikit-image: Update to 0.22.0.Ricardo Wurmus2024-01-16
| | | | | | | | | | | | | * gnu/packages/python-science.scm (python-scikit-image): Update to 0.22.0. [source]: Fetch from git repository. [build-system]: Use pyproject-build-system. [arguments]: Use G-expression; remove custom 'build phase; simplify 'check phase; enable all tests. [propagated-inputs]: Add python-lazy-loader. [native-inputs]: Add meson-python, python-numpydoc, python-packaging, and python-wheel. Change-Id: I00ede026a7941eae36157106f753a21fb64099c3
* gnu: python-imageio: Update to 2.33.1.Ricardo Wurmus2024-01-16
| | | | | | | | | * gnu/packages/python-xyz.scm (python-imageio): Update to 2.33.1. [propagated-inputs]: Remove python-psutil; add python-tifffile. [native-inputs]: Add python-black, python-flake8, python-fsspec, and python-pytest-cov. Change-Id: I5c64d939f5ee94ac9ec8fdbd7b51cd978b7df0fb
* gnu: python-lazy-loader: Update to 0.3.Ricardo Wurmus2024-01-16
| | | | | | | * gnu/packages/python-xyz.scm (python-lazy-loader): Update to 0.3. [native-inputs]: Add python-pre-commit. Change-Id: Id4f8b61e6e60dd6da04beb8c1e4d064dc34d994c
* gnu: python-tifffile: Update to 2023.12.9.Ricardo Wurmus2024-01-16
| | | | | | | | * gnu/packages/python-xyz.scm (python-tifffile): Update to 2023.12.9. [propagated-inputs]: Remove python-imagecodecs. [native-inputs]: Add python-pytest. Change-Id: I2567bef390e286ed4399cc67b80a9df503f53c0a
* gnu: python-scipy: Update to 1.11.4.Ricardo Wurmus2024-01-16
| | | | | | | | | | * gnu/packages/python-science.scm (python-scipy): Update to 1.11.4. [arguments]: Use mesonpy backend. [inputs]: Replace pybind11 with pybind11-2.10. [native-inputs]: Add python-click, python-doit, python-pooch, and python-pydevtool; replace python-cython with python-cython-0.29.35. Change-Id: I4b26e1b6382899bba24f84461f154e97765e08f5
* gnu: meson-python: Update to 0.15.0.Ricardo Wurmus2024-01-16
| | | | | | | | | | * gnu/packages/build-tools.scm (meson-python): Update to 0.15.0. [arguments]: Add phase 'delete-directory. [propagated-inputs]: Add python-cython, python-pyproject-metadata-0.7, and python-typing-extensions. [native-inputs]: Add python-pytest-cov. Change-Id: I412af929c9e0485aa2a15e316d247f58e6f3477b
* gnu: Add python-pydevtool.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (python-pydevtool): New variable. Change-Id: I325b81fa6421094a5a64084c06e66b8fa136e270
* gnu: Add python-pyproject-metadata-0.7.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (python-pyproject-metadata-0.7): New variable. Change-Id: I7c47c911fa2a33c0b5711b0009f31b3e32c1c1d7
* gnu: python-doit: Update to 0.36.0.Ricardo Wurmus2024-01-16
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-doit): Update to 0.36.0. [build-system]: Use pyproject-build-system. [arguments]: Disable test_execute test. [propagated-inputs]: Remove python-pyinotify; add python-importlib-metadata. [description]: Add missing spaces between two sentences. Change-Id: I1d046201c9bef63477f8fb0a2f8494bffbbbc711
* gnu: Add pybind11-2.10.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (pybind11-2.10): New variable. Change-Id: Ia7915af3baca36b0677d3f762046585abc473f56
* gnu: Add python-cython-0.29.35.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (python-cython-0.29.35): New variable. Change-Id: I09ec851a2051e885f6417524bbeeb81b743bef0b
* gnu: Add python-pydoc-markdown.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (python-pydoc-markdown): New variable. Change-Id: I03e45c2b87f626f7a8113d785c72c14a301d79be
* gnu: python-yapf: Update to 0.32.0.Ricardo Wurmus2024-01-16
| | | | | | | | | | * gnu/packages/python-xyz.scm (python-yapf): Update to 0.32.0. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-pytest. [propagated-inputs]: Add python-importlib-metadata, python-platformdirs, and python-tomli. Change-Id: I30fa0b9d643f6585624da87d5c1a1edbb59425c4
* gnu: Add python-docspec-python.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (python-docspec-python): New variable. Change-Id: Ic607d0a34a8601dd464251edd8c8509314b7489c
* gnu: Add python-nr-util.Ricardo Wurmus2024-01-16
| | | | | | * gnu/packages/python-xyz.scm (python-nr-util): New variable. Change-Id: I26dda5e5bc03334fb476e3f1fd2fa6aaf93a91c3
* gnu: go-github-com-arceliar-ironwood: Update to ↵Artyom V. Poptsov2024-01-15
| | | | | | | | | | v0.0.0-20231127131626-465b82dfb5bd. * gnu/packages/golang.scm (go-github-com-arceliar-ironwood): Update to v0.0.0-20231127131626-465b82dfb5bd. Change-Id: Ia94d7c88e54d33f7bb7b5054a757d7ef203d47c2 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
* gnu: yggdrasil: Update to 0.5.4.Artyom V. Poptsov2024-01-15
| | | | | | | * gnu/packages/networking.scm (yggdrasil): Update to 0.5.4. Change-Id: I4f386e1b69627b0c5a6095c42274b8a8bff8bfd9 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
* gnu: hypercorn: Reformat with guix style.Troy Figiel2024-01-15
| | | | * gnu/packages/python-web.scm (hypercorn): Reformat with guix style.
* gnu: hypercorn: Adjust inputs.Troy Figiel2024-01-15
| | | | | | | * gnu/packages/python-web.scm (hypercorn)[propagated-inputs]: Add python-exceptiongroup and python-tomli. Remove python-toml and python-typing-extensions. [native-inputs]: Remove python-mock.
* gnu: Remove python-tslearn.Ricardo Wurmus2024-01-15
| | | | | | | | This package now lives in the guix-science channel. * gnu/packages/machine-learning.scm (python-tslearn): Remove variable. Change-Id: I655df3417d258cb1231746626817fde9628e9569
* gnu: Add python-docspec.Ricardo Wurmus2024-01-15
| | | | | | * gnu/packages/python-xyz.scm (python-docspec): New variable. Change-Id: I3103bde3483273a335156b38de742f493fd366f1
* gnu: Add python-databind-json.Ricardo Wurmus2024-01-15
| | | | | | * gnu/packages/python-xyz.scm (python-databind-json): New variable. Change-Id: Iaab64e28ba6772c14704ff67cffab21a2f555460
* gnu: Add python-databind-core.Ricardo Wurmus2024-01-15
| | | | | | * gnu/packages/python-xyz.scm (python-databind-core): New variable. Change-Id: I45bf0ec5ef123ea20c50e2ca3caf930bfba45eea
* gnu: Add python-typeapi.Ricardo Wurmus2024-01-15
| | | | | | * gnu/packages/python-xyz.scm (python-typeapi): New variable. Change-Id: Id89f3152bcd593d677c4fcb7c98d586cd50e820b
* gnu: Add python-nr-stream.Ricardo Wurmus2024-01-15
| | | | | | * gnu/packages/python-xyz.scm (python-nr-stream): New variable. Change-Id: I59489156e4675a64a31b1cb7f62b7c845c005ce8
* gnu: Add python-nr-date.Ricardo Wurmus2024-01-15
| | | | | | * gnu/packages/python-xyz.scm (python-nr-date): New variable. Change-Id: I4251aef073df29ccada70f1398bce38cfb8962ba
* gnu: Add python-namex.Ricardo Wurmus2024-01-15
| | | | | | * gnu/packages/python-xyz.scm (python-namex): New variable. Change-Id: I02d4ed5e426f0b432c27086aa90628ae54759ca2
* gnu: python-requests-kerberos: Enable tests.Troy Figiel2024-01-15
| | | | | | | | | | | * gnu/packages/python-web.scm (python-requests-kerberos): Enable tests. [source]: Replace the PyPI release by the Github release. [build-system]: Swap to pyproject-build-system. [native-inputs]: Add python-pytest and python-pytest-mock. Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: Iea750cf722293c4054a6c6e43787806f8f2fd5e2
* gnu: python-requests-kerberos: Fix build.Troy Figiel2024-01-15
| | | | | | | | | * gnu/packages/python-web.scm (python-requests-kerberos)[propagated-inputs]: Add python-gssapi. Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I65d1fac0339a119e7a4912d5db150b4adb7586ad
* gnu: python-pyspnego: Propagate python-krb5.Sharlatan Hellseher2024-01-15
| | | | | | | * gnu/packages/python-xyz.scm (python-pyspnego)[propagated-inputs]: Add python-krb5. Change-Id: I2c8ccbd66394cb90ea047f7327d05ecbfe2ec22d
* gnu: Add python-krb5.Troy Figiel2024-01-15
| | | | | | * gnu/packages/python-xyz.scm (python-krb5): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
* gnu: Remove python-activepapers.Sharlatan Hellseher2024-01-15
| | | | | | | | | | | <https://issues.guix.gnu.org/68425> This package fails to build and has been not maintained since 2017. * gnu/packages/python-xyz.scm (python-activepapers): Remove variable. Reported-by: Troy Figiel <troy@troyfigiel.com> Change-Id: Id1e968cd4e06919a80ad05e5c8d3fb207426fdde
* gnu: hpcguix-web: Add explicit dependency on Guile-GnuTLS.Ludovic Courtès2024-01-15
| | | | | | | | | | | This is necessary in hpcguix-web 0.4.1 to connect to https://disarchive.guix.gnu.org. * gnu/packages/web.scm (hpcguix-web)[arguments]: In ‘wrap-program’ phase, add guile-gnutls to the wrapper’s search path. [inputs]: Add GUILE-GNUTLS. Change-Id: Ic4d6f65adeb763a404fc24c7e1c87fd7d26550c7
* gnu: fish-foreign-env: Update to 0.20230823.Tanguy Le Carrour2024-01-14
| | | | | | | | * gnu/packages/shells.scm (fish-foreign-env): Update to 0.20230823. [arguments]: Do no substitute in file that no longer exists. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Change-Id: I04138c1d3e8c174b2197e5ca60aaca4caa5453cc
* gnu: cuirass: Update to 7bcd3d0.Ludovic Courtès2024-01-14
| | | | | | * gnu/packages/ci.scm (cuirass): Update to 7bcd3d0. Change-Id: Iefc460df509a2c006f3a49d6050ef08940ed2850
* gnu: openssh: Fix build on ppc64le.Jack Hill2024-01-14
| | | | | | | | | | | | | * gnu/packages/ssh.scm (openssh)[source]: Use 'openssh-gcc-13-ppc64le-fzero-call-used-regs.patch'. * gnu/packages/patches/openssh-gcc-13-ppc64le-fzero-call-used-regs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Reported-by: Marcel van der Boom <marcel@van-der-boom.nl>. Change-Id: I41b1350b2cdd1487a8fd69b13b64f63c0dc166c9 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: guile-ssh: Update to 0.16.4.Artyom V. Poptsov2024-01-14
| | | | | | | | * gnu/packages/ssh.scm (guile-ssh): Update to 0.16.4. [arguments]: Improve the style. Change-Id: Ib7d741e7f4fc7a1fc167cfa4f7953f84d9f4d390 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: hpcguix-web: Update to 0.4.1.Ludovic Courtès2024-01-14
| | | | | | * gnu/packages/web.scm (hpcguix-web): Update to 0.4.1. Change-Id: I8bd642735b3cbdf03b07cdd184295b6e32a4e6f7
* gnu: Make intermediate packages public but hidden.Ludovic Courtès2024-01-14
| | | | | | | | | | | | | | | | | | | | | This makes those packages visible to (gnu ci), giving them first class in the eyes of Cuirass and similar tools, in turn ensuring substitutes are available (this was discovered by running ‘guix weather -c 10’). * gnu/packages/rust.scm (rust-bootstrap, rust-1.55) (rust-1.56, rust-1.57, rust-1.58, rust-1.59, rust-1.60) (rust-1.61, rust-1.62, rust-1.63, rust-1.64, rust-1.65) (rust-1.66, rust-1.67, rust-1.68, rust-1.69, rust-1.70) (rust-1.71, rust-1.72, rust-1.73): Make variable public and add ‘hidden?’ property. (rust): Remove ‘hidden?’ property. * gnu/packages/java.scm (java-hamcrest-parent-pom) (java-org-ow2-parent-pom-1.3, java-asm-bootstrap): Make variable public and add ‘hidden?’ property. * gnu/packages/ocaml.scm (dune-bootstrap) (ocaml4.09-dune-bootstrap, ocaml5.0-dune-bootstrap): Likewise. Change-Id: I32b0ea639a4f1c39466875acdbc9cbadf75c7668
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