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* Merge branch 'master' into stagingMarius Bakke2020-11-19
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| * gnu: transmission: Move remaining GUI-related files to "gui" output.Simon South2020-11-18
| | | | | | | | | | | | | | | | * gnu/packages/bittorrent.scm (transmission)[arguments]<phases>: Expand "move-gui" phase to move remaining GUI-related files (AppData file, localization files, man page) to "gui" output. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add uuid support to recutils.John Soo2020-11-18
| | | | | | | | | | | | | | * gnu/packages/databases.scm (recutils): [inputs] Add lib output of util-linux. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: ocaml-cairo2: Disable tests.Brett Gilio2020-11-18
| | | | | | | | | | | | * gnu/packages/ocaml.scm (ocaml-cairo2): Disable tests. Issue: #44725
| * gnu: Add python-telethon.Adam2020-11-18
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-telethon): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| * gnu: Add axel.Nicolas Goaziou2020-11-18
| | | | | | | | * gnu/packages/networking.scm (axel): New variable.
| * gnu: scribus: Update to 1.5.6.1.Nicolas Goaziou2020-11-18
| | | | | | | | * gnu/packages/scribus.scm (scribus): Update to 1.5.6.1.
| * Merge remote-tracking branch 'upstream/version-1.2.0'Tobias Geerinckx-Rice2020-11-18
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| | * gnu: guix: Fix typo in comment.Ludovic Courtès2020-11-17
| | | | | | | | | | | | * gnu/packages/package-management.scm (guix): Fix typo in comment.
| * | gnu: fldigi: Update to 4.1.16.Tobias Geerinckx-Rice2020-11-18
| | | | | | | | | | | | * gnu/packages/radio.scm (fldigi): Update to 4.1.16.
| * | gnu: splix: Compress PPDs.Tobias Geerinckx-Rice2020-11-18
| | | | | | | | | | | | | | | * gnu/packages/cups.scm (splix)[arguments]: Import SRFI-26 and add a ‘compress-PPDs’ phase.
| * | gnu: splix: Update to 2.0.0-315.76268c4.Tobias Geerinckx-Rice2020-11-18
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/cups.scm (splix): Update to 2.0.0-315.76268c4. [source]: Fetch from a more maintained git repository. [arguments]: Add an ‘enter-subdirectory’ phase. [inputs]: Remove instructions for building without JBIG. It's no longer patented.
| * | gnu: xlockmore: Update to 5.66.Tobias Geerinckx-Rice2020-11-18
| | | | | | | | | | | | * gnu/packages/xdisorg.scm (xlockmore): Update to 5.66.
| * | gnu: zabbix-agentd, zabbix-server: Update to 5.2.1.Tobias Geerinckx-Rice2020-11-18
| | | | | | | | | | | | * gnu/packages/monitoring.scm (zabbix-agentd): Update to 5.2.1.
| * | gnu: emacs-gcmh: Update to 0.2.1.Nicolas Goaziou2020-11-18
| | | | | | | | | | | | * gnu/packages/emacs-xyz.scm (emacs-gcmh): Update to 0.2.1.
| * | gnu: emacs-posframe: Update to 0.8.3.Nicolas Goaziou2020-11-18
| | | | | | | | | | | | * gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 0.8.3.
| * | gnu: python-semver: Fix build, again.Maxim Cournoyer2020-11-18
| | | | | | | | | | | | | | | | | | | | | | | | | | | This reverts "gnu: python-semver: Fix build." (commit b4e1ca0675571f3cda2a00afb3a2f0f01ff500f9) and overrides the check phase. * gnu/packages/python-xyz.scm (python-semver)[phases]: Override the 'check phase. [native-inputs]: Remove all existing native-inputs. Add python-pytest.
| * | gnu: astroid: Fix build.Tanguy Le Carrour2020-11-18
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/mail.scm (astroid)[arguments]: Add phase to wrap binary in GI_TYPELIB_PATH. Add 'glib-or-gtk-compile-schemas and 'glib-or-gtk-wrap phases from the glib-or-gtk build system. [propagated-inputs]: Add adwaita-icon-theme. Co-authored with Efraim Flashner <efraim@flashner.co.il> Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| * | gnu: gnubg: Prevent building with AVX instructions.Michael Rohleder2020-11-18
| | | | | | | | | | | | | | | | | | | | | * gnu/packages/games.scm (gnubg)[arguments]: Add configure-flags for Intel systems to build without AVX instructions. Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
| * | gnu: bennu-game-development: Update to 353.Pierre Neidhardt2020-11-18
| | | | | | | | | | | | * gnu/packages/game-development.scm (bennu-game-development): Update to 353.
| * | gnu: komikku: Update to 0.22.1.Leo Prikler2020-11-18
| | | | | | | | | | | | | | | | | | * gnu/packages/gnome.scm (komikku): Update to 0.22.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| * | gnu: Add mblaze.B. Wilson2020-11-18
| | | | | | | | | | | | | | | | | | * gnu/packages/mail.scm (mblaze): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
| * | gnu: bitcoin-core: Update to 0.20.1.Simon South2020-11-18
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/finance.scm (bitcoin-core): Update to 0.20.1. [source]: Remove obsolete patch. [native-inputs]: Add autoconf, automake and libtool. [inputs]: Remove protobuf. [arguments]: Add "set-no-git-flag" phase to indicate the build is not taking place within a git repository. * gnu/packages/patches/bitcoin-core-python-compat.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Christopher Baines <mail@cbaines.net>
| * | gnu: Add python-git-hammer.Leo Prikler2020-11-18
| | | | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-git-hammer): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| * | gnu: Add python-globber.Leo Prikler2020-11-18
| | | | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-globber): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| * | gnu: Add python-beautifultable.Leo Prikler2020-11-18
| | | | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-beautifultable): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| * | gnu: gpgme: Update to 1.15.0.Miguel Ángel Arruga Vivas2020-11-18
| | | | | | | | | | | | * gnu/packages/gnupg.scm (gpgme): Update to 1.15.0.
| * | gnu: icecat: Update to 78.5.0-guix0-preview1 [security fixes].Mark H Weaver2020-11-17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Includes fixes for CVE-2020-15999, CVE-2020-16012, CVE-2020-26951, CVE-2020-26953, CVE-2020-26956, CVE-2020-26958, CVE-2020-26959, CVE-2020-26960, CVE-2020-26961, CVE-2020-26965, CVE-2020-26966, and CVE-2020-26968. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. * gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version.
| * | Merge remote-tracking branch 'origin/version-1.2.0' into masterMaxim Cournoyer2020-11-17
| |\| | | | | | | | | | | | | | | | | | | | | | Conflicts: gnu/packages/bioinformatics.scm The python-pysam package fixed in master was kept instead of the update done in the version-1.2.0 branch.
| | * gnu: guix: Use libexec/guix/guile in the 'guix' shebang.Ludovic Courtès2020-11-16
| | | | | | | | | | | | | | | | | | | | | This is a followup to 880fe019ae64df37815bbdb1a22305f99dae759d. * gnu/packages/package-management.scm (guix)[arguments]: Delete 'patch-shebangs' phase.
| | * Merge branch 'version-1.2.0' of ssh://git.sv.gnu.org/srv/git/guix into ↵Ludovic Courtès2020-11-13
| | |\ | | | | | | | | | | | | version-1.2.0
| | | * gnu: python-pysam: Update to version 0.16.0.1.Maxim Cournoyer2020-11-13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | The check phase was failing with: starting phase `check' make: Entering directory '...drv-0/python-pysam-0.15.1-checkout/tests/pysam_data' samtools faidx ex1.fa samtools import ex1.fa.fai ex1.sam.gz ex1.bam [main] "samtools import" has been removed. Please use "samtools view" instead. make: *** [Makefile:56: ex1.bam] Error 1 * gnu/packages/bioinformatics.scm (python-pysam): Update to version 0.16.0.1. [phases]{check}: Delete a couple more failing test files. [native-inputs]: Add python-pytest.
| | * | gnu: guix: Update to 3ba6ffd.Ludovic Courtès2020-11-13
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| | * | gnu: guix: Update to 1.2.0rc1.Ludovic Courtès2020-11-13
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| | * | gnu: glib: Graft patch to detect changes to the installed applications.Ludovic Courtès2020-11-13
| | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fixes <https://bugs.gnu.org/35594>. Reported by sirgazil <sirgazil@zoho.com> and others. * gnu/packages/patches/glib-appinfo-watch.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/glib.scm (glib)[replacement]: New field. (glib-with-gio-patch): New variable. (glib-with-documentation): Use 'package/inherit'.
| | * gnu: python-flask-basicauth: Fix indentation.Maxim Cournoyer2020-11-12
| | | | | | | | | | | | * gnu/packages/python-web.scm (python-flask-basicauth): Fix indentation.
| | * gnu: python-flask-basicauth: Fix build.Maxim Cournoyer2020-11-12
| | | | | | | | | | | | | | | * gnu/packages/python-web.scm (python-flask-basicauth)[phases]: Add a 'fix-imports phase.
| * | gnu: snap: Update to 6.3.3.Nicolas Goaziou2020-11-17
| | | | | | | | | | | | * gnu/packages/education.scm (snap): Update to 6.3.3.
| * | gnu: units: Update to 2.21.Tobias Geerinckx-Rice2020-11-17
| | | | | | | | | | | | * gnu/packages/maths.scm (units): Update to 2.21.
| * | gnu: python-parted: Update to 3.11.7.Tobias Geerinckx-Rice2020-11-17
| | | | | | | | | | | | * gnu/packages/disk.scm (python-parted): Update to 3.11.7.
| * | gnu: oath-toolkit: Update to 2.6.4.Tobias Geerinckx-Rice2020-11-17
| | | | | | | | | | | | * gnu/packages/authentication.scm (oath-toolkit): Update to 2.6.4.
| * | gnu: nnn: Update to 3.5.Tobias Geerinckx-Rice2020-11-17
| | | | | | | | | | | | * gnu/packages/admin.scm (nnn): Update to 3.5.
| * | gnu: Add astroid.Tanguy Le Carrour2020-11-17
| | | | | | | | | | | | | | | | | | | | | * gnu/packages/mail.scm (astroid): New variable. Co-authored with Efraim Flashner <efraim@flashner.co.il>. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| * | gnu: gmime: Enable introspection.Tanguy Le Carrour2020-11-17
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/mail.scm (gmime)[arguments]: Add the "--enable-introspection" flag to configure-flags. [native-inputs]: Add gobject-introspection. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| * | gnu: libhandy: Update to 1.0.2.Tobias Geerinckx-Rice2020-11-17
| | | | | | | | | | | | * gnu/packages/gnome.scm (libhandy): Update to 1.0.2.
| * | gnu: libhandy: Update home page.Tobias Geerinckx-Rice2020-11-17
| | | | | | | | | | | | * gnu/packages/gnome.scm (libhandy)[home-page]: Update.
| * | gnu: arc-theme: Add missing configure flag.Tobias Geerinckx-Rice2020-11-17
| | | | | | | | | | | | | | | * gnu/packages/gnome.scm (arc-theme)[arguments]: Add ‘--disable-cinnamon’ to #:configure-flags.
| * | gnu: node@10.22: Update to 10.22.1.Jonathan Brielmaier2020-11-17
| | | | | | | | | | | | * gnu/packages/node.scm (node-10.22): Update to 10.22.1.
| * | gnu: tomb: Update to 2.8.Eric Bavier2020-11-17
| | | | | | | | | | | | | | | | | | | | | | | | | | | Fixes CVE-2020-28638. * gnu/packages/crypto.scm (tomb): Update to 2.8 [source]: Remove obsolete patch. * gnu/packages/patches/tomb-fix-errors-on-open.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
| * | gnu: emacs-helm: Update to 3.7.0.Pierre Neidhardt2020-11-17
| | | | | | | | | | | | * gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.7.0.
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