| Commit message (Collapse) | Author | Age |
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* gnu/packages/bioinformatics.scm (bless)[source, arguments]: Remove all
trailing #Ts.
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* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use a gexp instead of
referencing %outputs.
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* gnu/packages/bioinformatics.scm (qtltools)[arguments]: Use a gexp instead of
referencing %build-inputs.
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* gnu/packages/bioinformatics.scm (bamutils): Update to 1.0.14.
[arguments]: Patch DATE for reproducibility; prepare sources of libstatgen.
[native-inputs]: Add sources of libstatgen.
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* gnu/packages/bioinformatics.scm (bamutils)[arguments]: Use gexp.
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* gnu/packages/bioinformatics.scm (bamm)[arguments]: Use gexp instead of
%build-inputs.
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* gnu/packages/python-xyz.scm (python2-openpyxl)[arguments]: Add value
for #:python field.
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* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.5.1.
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* gnu/packages/gnome.scm (glade3)[arguments]: Add optional
'skip-gjs-test' phase.
[native-inputs]: Provide GJS only when 'target-x86-64?'.
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This allows us to build Xfce on non-x86_64 platforms.
* gnu/packages/gstreamer.scm (gst-plugins-good)[inputs]: Use
'librsvg-for-system' instead of 'librsvg'.
* gnu/packages/gtk.scm (guile-rsvg)[inputs]: Likewise.
* gnu/packages/xfce.scm (xfce4-xkb-plugin)[inputs]: Likewise.
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* gnu/packages/gnome.scm (librsvg-for-system): New procedure.
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* gnu/packages/gnome.scm (librsvg-2.40): New variable.
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* gnu/packages/bioinformatics.scm (prinseq)[arguments]: Pass missing argument
to SEARCH-INPUT-FILE.
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Fixes <https://bugs.gnu.org/37123>.
* gnu/packages/gnome.scm (gnome-shell)[arguments]: Remove LD_LIBRARY_PATH from
wrapper.
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* gnu/packages/python-xyz.scm (python2-matplotlib)[arguments]: Delete
'sanity-check phase.
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* gnu/packages/python-xyz.scm (python2-matplotlib)[arguments]: Remove
trailing #T from build phase.
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This reverts commit 07a80e30a10e2a6ed4760f12711f8a91391398e4.
This commit affects rust crates that are inputs to librsvg, which causes
many packages to be rebuilt.
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This is a follow-up to 68d090002a1a5623494006fca3e2c2c97d3ff676.
* gnu/packages/tor.scm (tor)[arguments]: Only add custom
'adjust-test-suite phase on aarch64, powerpc32.
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This is a follow-up to commit ec4892c742ff4e2f00d0fc2595843890ef16afa3.
* gnu/packages/python-xyz.scm (python2-numpy)[arguments]: Also delete a second
test file that depends on the previously deleted test file.
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* gnu/packages/rust-apps.scm (rust-cbindgen)[source]: Change source
file-name suffix from '.crate' to '.tar.gz'.
* gnu/packages/crates-graphics.scm (rust-ansi-term-0.12): Likewise.
(rust-ansi-term-0.11): Likewise.
(rust-rgb-0.8): Likewise.
* gnu/packages/crates-io.scm (rust-adler32-1): Likewise.
(rust-antidote-1): Likewise.
(rust-atty-0.2): Likewise.
(rust-autocfg-0.1): Likewise.
(rust-backtrace-sys-0.1): Likewise.
(rust-base-x-0.2): Likewise.
(rust-bencher-0.1): Likewise.
(rust-bitflags-1): Likewise.
(rust-blas-sys-0.7): Likewise.
(rust-cargon-0.0): Likewise.
(rust-cblas-sys-0.1): Likewise.
(rust-cc-1): Likewise.
(rust-cfg-if-0.1): Likewise.
(rust-clang-sys-0.26): Likewise.
(rust-clap-2): Likewise.
(rust-clicolors-control-1): Likewise.
(rust-cloudabi-0.1): Likewise.
(rust-cloudabi-0.0): Likewise.
(rust-cmake-0.1): Likewise.
(rust-compiler-builtins-0.1): Likewise.
(rust-constant-time-eq-0.1): Likewise.
(rust-core-foundation-sys-0.6): Likewise.
(rust-data-encoding-2): Likewise.
(rust-defmac-0.2): Likewise.
(rust-defmac-0.1): Likewise.
(rust-dirs-1): Likewise.
(rust-discard-1): Likewise.
(rust-doc-comment-0.3): Likewise.
(rust-dtoa-0.4): Likewise.
(rust-dtoa-0.2): Likewise.
(rust-fallible-iterator-0.2): Likewise.
(rust-filetime-0.2): Likewise.
(rust-findshlibs-0.5): Likewise.
(rust-fixedbitset-0.2): Likewise.
(rust-fixedbitset-0.1): Likewise.
(rust-fnv-1): Likewise.
(rust-foreign-types-shared-0.2): Likewise.
(rust-fs-extra-1): Likewise.
(rust-fuchsia-cprng-0.1): Likewise.
(rust-fuchsia-zircon-0.3): Likewise.
(rust-fuchsia-zircon-sys-0.3): Likewise.
(rust-futures-0.1): Likewise.
(rust-futures-core-preview-0.3): Likewise.
(rust-futures-cpupool-0.1): Likewise.
(rust-futures-io-preview-0.3): Likewise.
(rust-futures-sink-preview-0.3): Likewise.
(rust-getopts-0.2): Likewise.
(rust-glob-0.3): Likewise.
(rust-glob-0.2): Likewise.
(rust-heapsize-0.4): Likewise.
(rust-heapsize-0.3): Likewise.
(rust-heapsize-plugin-0.1): Likewise.
(rust-heck-0.3): Likewise.
(rust-hex-0.3): Likewise.
(rust-hex-0.2): Likewise.
(rust-hostname-0.1): Likewise.
(rust-iovec-0.1): Likewise.
(rust-itoa-0.4): Likewise.
(rust-itoa-0.1): Likewise.
(rust-json-0.11): Likewise.
(rust-kernel32-sys-0.2): Likewise.
(rust-language-tags-0.2): Likewise.
(rust-lazy-static-1): Likewise.
(rust-libloading-0.5): Likewise.
(rust-lock-api-0.1): Likewise.
(rust-log-0.4): Likewise.
(rust-maplit-1): Likewise.
(rust-matches-0.1): Likewise.
(rust-matrixmultiply-0.2): Likewise.
(rust-matrixmultiply-0.1): Likewise.
(rust-md5-0.7): Likewise.
(rust-md5-0.6): Likewise.
(rust-memmap-0.7): Likewise.
(rust-memmap-0.6): Likewise.
(rust-mime-0.3): Likewise.
(rust-miniz-oxide-0.3): Likewise.
(rust-miniz-sys-0.1): Likewise.
(rust-miow-0.3): Likewise.
(rust-miow-0.2): Likewise.
(rust-modifier-0.1): Likewise.
(rust-net2-0.2): Likewise.
(rust-nodrop-0.1): Likewise.
(rust-nodrop-union-0.1): Likewise.
(rust-num-traits-0.1): Likewise.
(rust-numtoa-0.1): Likewise.
(rust-openssl-probe-0.1): Likewise.
(rust-owning-ref-0.4): Likewise.
(rust-parity-wasm-0.40): Likewise.
(rust-peeking-take-while-0.1): Likewise.
(rust-percent-encoding-2): Likewise.
(rust-percent-encoding-1): Likewise.
(rust-permutohedron-0.2): Likewise.
(rust-pico-sys-0.0): Likewise.
(rust-pkg-config-0.3): Likewise.
(rust-plain-0.2): Likewise.
(rust-plugin-0.2): Likewise.
(rust-pocket-resources-0.3): Likewise.
(rust-ppv-lite86-0.2): Likewise.
(rust-proc-macro2-1): Likewise.
(rust-quick-error-2): Likewise.
(rust-quick-error-1): Likewise.
(rust-quote-1): Likewise.
(rust-rand-0.7): Likewise.
(rust-rand-0.6): Likewise.
(rust-rand-0.3): Likewise.
(rust-rand-chacha-0.1): Likewise.
(rust-rand-core-0.4): Likewise.
(rust-rand-core-0.3): Likewise.
(rust-rand-hc-0.2): Likewise.
(rust-rand-hc-0.1): Likewise.
(rust-rand-isaac-0.1): Likewise.
(rust-rand-jitter-0.1): Likewise.
(rust-rand-os-0.1): Likewise.
(rust-rand-pcg-0.3): Likewise.
(rust-rand-pcg-0.2): Likewise.
(rust-rand-pcg-0.1): Likewise.
(rust-rand-xorshift-0.1): Likewise.
(rust-rawpointer-0.2): Likewise.
(rust-rawpointer-0.1): Likewise.
(rust-rdrand-0.4): Likewise.
(rust-redox-syscall-0.1): Likewise.
(rust-redox-termios-0.1): Likewise.
(rust-resolv-conf-0.6): Likewise.
(rust-rustc-demangle-0.1): Likewise.
(rust-rustc-serialize-0.3): Likewise.
(rust-rustc-std-workspace-core-1): Likewise.
(rust-ryu-1): Likewise.
(rust-safemem-0.3): Likewise.
(rust-same-file-1): Likewise.
(rust-schannel-0.1): Likewise.
(rust-scoped-threadpool-0.1): Likewise.
(rust-scoped-tls-1): Likewise.
(rust-scoped-tls-0.1): Likewise.
(rust-scopeguard-1): Likewise.
(rust-scopeguard-0.3): Likewise.
(rust-security-framework-sys-0.3): Likewise.
(rust-semver-parser-0.9): Likewise.
(rust-semver-parser-0.7): Likewise.
(rust-serde-derive-1): Likewise.
(rust-shlex-1): Likewise.
(rust-shlex-0.1): Likewise.
(rust-slab-0.4): Likewise.
(rust-socket2-0.3): Likewise.
(rust-sourcefile-0.1): Likewise.
(rust-spin-0.5): Likewise.
(rust-stacker-0.1): Likewise.
(rust-static-assertions-1): Likewise.
(rust-static-assertions-0.3): Likewise.
(rust-stdweb-internal-runtime-0.1): Likewise.
(rust-stdweb-internal-test-macro-0.1): Likewise.
(rust-streaming-stats-0.2): Likewise.
(rust-strsim-0.9): Likewise.
(rust-strsim-0.8): Likewise.
(rust-synstructure-test-traits-0.1): Likewise.
(rust-tar-0.4): Likewise.
(rust-tempdir-0.3): Likewise.
(rust-tempfile-3): Likewise.
(rust-term-0.4): Likewise.
(rust-term-0.2): Likewise.
(rust-termcolor-1): Likewise.
(rust-termion-1): Likewise.
(rust-termios-0.3): Likewise.
(rust-thread-id-3): Likewise.
(rust-thread-local-1): Likewise.
(rust-thread-local-0.3): Likewise.
(rust-threadpool-1): Likewise.
(rust-time-0.1): Likewise.
(rust-tokio-mock-task-0.1): Likewise.
(rust-toml-0.5): Likewise.
(rust-tracing-core-0.1): Likewise.
(rust-traitobject-0.1): Likewise.
(rust-try-from-0.3): Likewise.
(rust-try-lock-0.2): Likewise.
(rust-typeable-0.1): Likewise.
(rust-typemap-0.3): Likewise.
(rust-typenum-1): Likewise.
(rust-ucd-trie-0.1): Likewise.
(rust-ucd-util-0.1): Likewise.
(rust-unicode-xid-0.2): Likewise.
(rust-unicode-xid-0.1): Likewise.
(rust-unreachable-1): Likewise.
(rust-unsafe-any-0.4): Likewise.
(rust-untrusted-0.7): Likewise.
(rust-vcpkg-0.2): Likewise.
(rust-vec-map-0.8): Likewise.
(rust-version-check-0.9): Likewise.
(rust-version-check-0.1): Likewise.
(rust-void-1): Likewise.
(rust-wasi-0.5): Likewise.
(rust-wasm-bindgen-shared-0.2): Likewise.
(rust-wasm-bindgen-test-macro-0.2): Likewise.
(rust-widestring-0.4): Likewise.
(rust-winapi-0.3): Likewise.
(rust-winapi-0.2): Likewise.
(rust-winapi-build-0.1): Likewise.
(rust-winapi-util-0.1): Likewise.
(rust-wincolor-1): Likewise.
(rust-winutil-0.1): Likewise.
(rust-ws2-32-sys-0.2): Likewise.
(rust-xattr-0.2): Likewise.
(rust-xdg-2): Likewise.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/python-xyz.scm (python2-numpy)[native-inputs]: Do not inherit
from Python 3 variant; use only python2-cython, python2-pytest, and gfortran.
[arguments]: Add phase 'delete-failing-test.
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This is a followup to 07ac13a26a0d7c8319afb42c55fc2116ec44668f, which
omitted to switch to gexps in packages that inherit from 'petsc'.
Reported by Mathieu Othacehe <othacehe@gnu.org>.
* gnu/packages/maths.scm (petsc-complex)[arguments]: Use gexps.
(petsc-openmpi)[arguments]: Likewise.
(petsc-complex-openmpi)[arguments]: Likewise.
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* gnu/packages/maths.scm (scalapack): Update to 2.1.0.
[source]: Remove "scalapack-blacs-mpi-deprecations.patch" and add
"scalapack-gcc-10-compilation.patch".
[arguments]: Add 'skip-faulty-test' phase.
* gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch: Remove.
* gnu/packages/patches/scalapack-gcc-10-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
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* gnu/packages/tor.scm (tor)[arguments]: Add phase to remove sandbox
during one of the tests.
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* gnu/packages/gnome.scm (gnome-builder) [phase 'patch-meson]: Don’t search
for webkit2gtk-4.1.
[inputs]: Replace devhelp with devhelp-with-libsoup2 and
webkit with webkit-with-libsoup2.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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* gnu/packages/gnome.scm (devhelp-with-libsoup2): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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* gnu/packages/patches/freecad-boost-serialization.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/engineering.scm (freecad) [source]: Use it.
[arguments]{#:configure-flags}: Turn it into a GEXP and adapt it.
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* gnu/packages/image-processing.scm (vtk-8): Remove it.
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Switch to vtk-9 with the relevant patch to be able to get rid of vtk-8.
* gnu/packages/patches/freecad-vtk9.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/engineering.scm (freecad)[source]: Use it.
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* gnu/packages/haskell.scm (ghc-8.10)[arguments]<#:phases>: Disable
failing test.
Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
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* gnu/packages/patches/agg-2.5-gcc8.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/graphics.scm (agg)[source]: Use it.
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* gnu/packages/photo.scm (darktable)[arguments]<#:phases>: Rename
'set-LDFLAGS-and-CPATH to 'set-LDFLAGS. Don't set CPATH.
[inputs]: Remove ilmbase. Add imath. Replace openexr-2 with openexr.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/photo.scm (darktable)[inputs]: Change libsoup to
libsoup-minimal-2.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/maths.scm (slepc): Update to 3.16.1.
[native-inputs]: Use PYTHON instead of PYTHON-2. Add WHICH.
[properties]: New field.
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* gnu/packages/maths.scm (petsc): Update to 3.16.1.
[native-inputs]: Use PYTHON instead of PYTHON-2. Add WHICH.
[arguments]: Rewrite using gexps. Pass '--with-openblas-dir'. In
'configure' phase, modify "config/example_template.py".
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The python-charset-normalizer package is Python 3 only.
* gnu/packages/python-web.scm (python-requests)[properties]: New field.
(python2-requests): Rewrite to remove 'python-charset-normalizer' from
'propagated-inputs'.
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* gnu/packages/python-xyz.scm (python-notify2)[native-inputs]: Rename to...
[propagated-inputs]: ... this.
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This allows things like 'python2-notify2' to actually use the Python 2
variant of 'python-dbus'.
* gnu/packages/python-xyz.scm (python-dbus)[properties]: New field.
(python2-dbus)[inputs]: Remove unnecessary 'alist-delete' argument.
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* gnu/packages/kde-systemtools.scm (krfb)[inputs]: Replace pipewire with
pipewire-0.3.
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* gnu/packages/linux.scm (pipewire-0.3)[inputs]: Add avahi and ldacbt.
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* gnu/packages/linux.scm (pipewire-0.3): Update to 0.3.40.
[arguments]: Disable session managers to avoid missing input.
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* gnu/packages/rust.scm (rust-1.39)[supported-systems]: New field.
(rust-1.40)[supported-systems]: Remove.
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* gnu/packages/polkit.scm (polkit*): Rename to...
(polkit-mozjs): ... this. Adjust users.
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* gnu/packages/task-management.scm (blanket): Update to 0.5.0.
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Fixes <https://issues.guix.gnu.org/52066>.
* gnu/packages/make-bootstrap.scm (glibc-for-bootstrap)[native-inputs]:
Add gcc-7.
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* gnu/packages/kde.scm (marble-qt)[arguments]<#:configure-flags>: Remove
"-DCMAKE_BUILD_TYPE=Release" and "-DWITH_KF5=FALSE". Add
"-DBUILD_MARBLE_TOOLS=YES" and "-DBUILD_TOUCH=YES".
[native-inputs]: Add extra-cmake-modules.
[inputs]: Sort alphabetically. Add gpsd, kcoreaddons, kcrash, kdoctools,
ki18n, kio, knewstuff, kparts, krunner, kwallet, perl, phonon, protobuf,
qtserialport, qtsvg, shapelib, shared-mime-info, zlib. Remove qtwebkit.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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* gnu/packages/kde.scm (marble-qt): Update to 21.08.3.
[build-system]: Use qt-build-system.
[arguments]<#:configure-flags>: Pass "-DBUILD_MARBLE_TESTS=FALSE".
[license]: Change to lgpl2.1+.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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* gnu/packages/geo.scm (marble-qt): Move to (gnu packages kde).
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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* gnu/packages/virtualization.scm (libosinfo)[inputs]: Use osinfo-db-next
instead of osinfo-db.
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* gnu/packages/virtualization.scm (osinfo-db-next): New variable.
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