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* gnu: edge-addition-planarity-suite: Move to the (gnu packages graph) module.Andreas Enge2019-06-17
| | | | | * gnu/packages/maths.scm (edge-addition-planarity-suite): Move from here... * gnu/packages/maths.scm (edge-addition-planarity-suite): ...to here.
* gnu: Fix freeorion build.Nicolas Goaziou2019-06-17
| | | | * gnu/packages/games.scm (freeorion)[arguments]: Fix font unbundling.
* gnu: Add edge-addition-planarity-suite.Andreas Enge2019-06-17
| | | | * gnu/packages/maths.scm (edge-addition-planarity-suite): New variable.
* gnu: python-cypari2: Update to 2.1.1.Andreas Enge2019-06-17
| | | | * gnu/packages/sagemath.scm (python-cypari2): Update to 2.1.1.
* gnu: Add cliquer.Andreas Enge2019-06-17
| | | | * gnu/packages/sagemath.scm (cliquer): New variable.
* gnu: busybox: Don't install to usr.Efraim Flashner2019-06-17
| | | | | * gnu/packages/busybox.scm (busybox)[arguments]: Add a custom phase to prevent installing to %PREFIX/usr.
* gnu: waybar: Add optional dependencies.Gábor Boskovits2019-06-17
| | | | | * gnu/packages/wm.scm(waybar)[inputs]: Add libdbusmenu, libnl, libmpdclient and pulseaudio.
* gnu: python-scipy: Update to 1.2.2.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/python-xyz.scm (python-scipy): Update to 1.2.2.
* gnu: oil-shell: Update to 0.6pre22.Robert Vollmert2019-06-17
| | | | | | | | | | It turns out the currently packaged release fails to build for me. According to upstream, the 0.6 pre-releases are preferable to currently packaged 0.5. gnu/packages/shells.scm (oil-shell): Update to 0.6pre22. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: kakoune: Remove dependency on boost.Robert Vollmert2019-06-17
| | | | | | | | kakoune builds without boost since a while already. * gnu/packages/text-editors.scm (kakoune)[inputs]: Remove boost. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: open-zwave: Unbundle hidapi.Ludovic Courtès2019-06-17
| | | | | | | | | * gnu/packages/patches/open-zwave-hidapi.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/zwave.scm (open-zwave)[source](patches): New field. (snippet): Delete 'cpp/hidapi'. [native-inputs]: Add PKG-CONFIG. [inputs]: Add HIDAPI.
* gnu: gap: Update to 4.10.1.Andreas Enge2019-06-17
| | | | | | | | * gnu/packages/algebra.scm (gap): Update to 4.10.1. Install headers and library files by hand, since the make targets have disappeared. Delete the special check phase, since the "make check" target has appeared. Remove a package that is no longer recommended, and enable two recommended packages with clarified licenses.
* gnu: cmst: Don't install files to usr.Efraim Flashner2019-06-17
| | | | | * gnu/packages/connman.scm (cmst)[arguments]: Move custom 'fix-Makefiles phase before 'build. Add more substitutions.
* gnu: cava: Don't install files to usr.Efraim Flashner2019-06-17
| | | | | * gnu/packages/audio.scm (cava)[arguments]: In configure-flags change FONT_DIR to not use 'usr'.
* gnu: toybox: Don't install files to usr.Efraim Flashner2019-06-17
| | | | | * gnu/packages/busybox.scm (toybox)[arguments]: Add custom phase to remove any files installed in $PREFIX/usr.
* gnu: xpra: Update to 2.5.2.Rutger Helling2019-06-17
| | | | * gnu/packages/xorg.scm (xpra): Update to 2.5.2.
* gnu: Add emacs-extend-smime.Chris Marusich2019-06-16
| | | | * gnu/packages/emacs-xyz.scm (emacs-extend-smime): New variable.
* gnu: Upgrade emacs-default-encrypt to 4.4.Chris Marusich2019-06-16
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-default-encrypt) <version>: Upgrade to 4.4. <sha256>: Update accordingly. <uri, home-page>: Honor changes to upstream's website.
* gnu: r-rhisat2: Update to 1.0.3.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.0.3.
* gnu: r-seurat: Update to 3.0.2.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.2.
* gnu: r-tximport: Update to 1.12.1.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.1.
* gnu: r-systempiper: Update to 1.18.1.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.1.
* gnu: r-r-utils: Update to 2.9.0.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/statistics.scm (r-r-utils): Update to 2.9.0.
* gnu: r-dt: Update to 0.7.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/statistics.scm (r-dt): Update to 0.7.
* gnu: r-rcpparmadillo: Update to 0.9.500.2.0.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.500.2.0.
* gnu: r-mime: Update to 0.7.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/statistics.scm (r-mime): Update to 0.7.
* gnu: r-formatr: Update to 1.7.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/statistics.scm (r-formatr): Update to 1.7.
* gnu: r-ggplot2: Update to 3.2.0.Ricardo Wurmus2019-06-17
| | | | | * gnu/packages/statistics.scm (r-ggplot2): Update to 3.2.0. [propagated-inputs]: Remove r-plyr.
* gnu: r-servr: Update to 0.14.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/cran.scm (r-servr): Update to 0.14.
* gnu: r-polspline: Update to 1.1.15.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/cran.scm (r-polspline): Update to 1.1.15.
* gnu: r-deldir: Update to 0.1-21.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/cran.scm (r-deldir): Update to 0.1-21.
* gnu: r-nor1mix: Update to 1.3-0.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/cran.scm (r-nor1mix): Update to 1.3-0.
* gnu: r-tractor-base: Update to 3.3.2.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/cran.scm (r-tractor-base): Update to 3.3.2.
* gnu: r-rspectra: Update to 0.15-0.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/cran.scm (r-rspectra): Update to 0.15-0.
* gnu: r-emmeans: Update to 1.3.5.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/cran.scm (r-emmeans): Update to 1.3.5.
* gnu: r-abcrf: Update to 1.8.Ricardo Wurmus2019-06-17
| | | | | * gnu/packages/cran.scm (r-abcrf): Update to 1.8. [propagated-inputs]: Add r-doparallel and r-foreach.
* gnu: r-sjmisc: Update to 2.8.0.Ricardo Wurmus2019-06-17
| | | | | * gnu/packages/cran.scm (r-sjmisc): Update to 2.8.0. [propagated-inputs]: Remove r-haven; add r-insight.
* gnu: r-extradistr: Update to 1.8.11.Ricardo Wurmus2019-06-17
| | | | * gnu/packages/cran.scm (r-extradistr): Update to 1.8.11.
* gnu: guile-gi: Update to 0.0.2.Ricardo Wurmus2019-06-17
| | | | | | | | * gnu/packages/guile-xyz.scm (guile-gi): Update to 0.0.2. [source]: Fetch using url-fetch. [arguments]: Add make flags to remove unexpectedly passing test from XFAIL_TESTS. [native-inputs]: Remove autoconf, automake, and texinfo.
* gnu: guile-picture-language: Update to 0.0.1-1-91d10c9.Ricardo Wurmus2019-06-17
| | | | | | | * gnu/packages/guile-xyz.scm (guile-picture-language): Update to 0.0.1-1-91d10c9. [build-system]: Use gnu-build-system. [native-inputs]: Add autoconf, automake, imagemagick, pkg-config, and texinfo.
* gnu: youtube-viewer: Refer to youtube-dl.Tobias Geerinckx-Rice2019-06-17
| | | | | * gnu/packages/video.scm (youtube-viewer)[inputs]: Add youtube-dl. [arguments]: Add ‘refer-to-inputs’ phase.
* gnu: radare2: Download over HTTPS.Tobias Geerinckx-Rice2019-06-17
| | | | * gnu/packages/engineering.scm (radare2)[source]: Use HTTPS.
* gnu: radare2: Don't use NAME in source URI.Tobias Geerinckx-Rice2019-06-17
| | | | * gnu/packages/engineering.scm (radare2)[source]: Hard-code NAME.
* gnu: nsd: Update to 4.2.0.Tobias Geerinckx-Rice2019-06-17
| | | | * gnu/packages/dns.scm (nsd): Update to 4.2.0.
* gnu: knot: Update to 2.8.2.Tobias Geerinckx-Rice2019-06-17
| | | | * gnu/packages/dns.scm (knot): Update to 2.8.2.
* gnu: suil: Update to 0.10.4.Tobias Geerinckx-Rice2019-06-17
| | | | * gnu/packages/audio.scm (suil): Update to 0.10.4.
* gnu: Add freeorionJesse Gibbons2019-06-16
| | | | * gnu/packages/games.scm (freeorion): New variable.
* gnu: docker-compose: Add required Python dependencies.Tobias Geerinckx-Rice2019-06-16
| | | | | | | * gnu/packages/python-xyz.scm (python-jsonschema-2.6): New old public variable. * gnu/packages/docker.scm (docker-compose)[inputs]: Add python-docker-pycreds and use python-jsonschema-2.6.
* gnu: dstat: Add two patches, fix two bugs.Tobias Geerinckx-Rice2019-06-16
| | | | | | | * gnu/packages/admin.scm (dstat)[source]: Add patches. * gnu/packages/patches/dstat-fix-crash-when-specifying-delay.patch, gnu/packages/patches/dstat-skip-devices-without-io.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them.
* gnu: dstat: Fix Python 3 deprecation warning.Tobias Geerinckx-Rice2019-06-16
| | | | | * gnu/packages/admin.scm (dstat)[arguments]: Add ‘fix-python3-DeprecationWarning’ phase.
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