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* gnu: Add gnome-boxes.Pierre Neidhardt2020-03-06
| | | | * gnu/packages/gnome.scm (gnome-boxes): New variable.
* gnu: tracker-miners: Update to 2.3.2.Pierre Neidhardt2020-03-06
| | | | * gnu/packages/gnome.scm (tracker-miners): Update to 2.3.2.
* gnu: tracker: Update to 2.3.2.Pierre Neidhardt2020-03-06
| | | | | | | | | * gnu/packages/gnome.scm (tracker): Update to 2.3.2. [arguments]: Fix tests properly. [native-inputs]: Remove unneeded native-inputs. [inputs]: Remove unneeded inputs. [description]: Replace unclear description with more down to earth use cases. [license]: Replace lgpl2.0+ with bsd-3 to reflect update.
* gnu: libvirt-glib: Update to 3.0.0.Pierre Neidhardt2020-03-06
| | | | * gnu/packages/virtualization.scm (libvirt-glib): Update to 3.0.0.
* gnu: python-pygit2: Update to 1.1.0.Marius Bakke2020-03-06
| | | | | | * gnu/packages/python-xyz.scm (python-pygit2): Update to 1.1.0. [propagated-inputs]: Remove PYTHON-SIX and PYTHON-TOX. Add PYTHON-CACHED-PROPERTY. (python2-pygit2): Remove variable (Python 2 is no longer supported).
* gnu: gitg: Remove redundant input.Marius Bakke2020-03-06
| | | | * gnu/packages/gnome.scm (gitg)[inputs]: Remove LIBGIT2.
* gnu: libgit2-glib: Adjust inputs.Marius Bakke2020-03-06
| | | | | | * gnu/packages/gnome.scm (libgit2-glib)[native-inputs]: Move LIBSSH2 ... [inputs]: ... here. Move LIBGIT2 ... [propagated-inputs]: ... here. New field.
* gnu: libgit2-glib: Update to 0.99.0.1.Marius Bakke2020-03-06
| | | | | * gnu/packages/gnome.scm (libgit2-glib): Update to 0.99.0.1. [native-inputs]: Remove INTLTOOL.
* gnu: r-modeltools: Update to 0.2-23.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/statistics.scm (r-modeltools): Update to 0.2-23.
* gnu: r-ggplot2: Update to 3.3.0.Ricardo Wurmus2020-03-06
| | | | | | * gnu/packages/statistics.scm (r-ggplot2): Update to 3.3.0. [propagated-inputs]: Remove r-lazyeval, r-reshape2, and r-viridislite; add r-glue and r-isoband.
* gnu: Add r-isoband.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/cran.scm (r-isoband): New variable.
* gnu: r-bookdown: Update to 0.18.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/cran.scm (r-bookdown): Update to 0.18.
* gnu: r-fs: Update to 1.3.2.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/cran.scm (r-fs): Update to 1.3.2.
* gnu: r-flextable: Update to 0.5.9.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/cran.scm (r-flextable): Update to 0.5.9.
* gnu: r-lava: Update to 1.6.7.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/cran.scm (r-lava): Update to 1.6.7.
* gnu: Update python-scikit-learn to 0.22.1.Roel Janssen2020-03-06
| | | | | * gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.22.1; Add python-joblib to native-inputs to run the test suite.
* gnu: Add soci.Pierre Neidhardt2020-03-06
| | | | * gnu/packages/databases.scm (soci): New variable.
* gnu: fmt: Update to 6.1.2.Pierre Neidhardt2020-03-06
| | | | * gnu/packages/pretty-print.scm (fmt): Update to 6.1.2.
* gnu: fmt: Use HTTPS and git-fetch.Pierre Neidhardt2020-03-06
| | | | | * gnu/packages/pretty-print.scm (fmt)[source]: Use git-fetch. [home-page]: Use HTTPS.
* gnu: python-aiohttp: Update to 3.6.2.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/python-web.scm (python-aiohttp): Update to 3.6.2.
* gnu: python-scanpy: Update to 1.4.5.1.Ricardo Wurmus2020-03-06
| | | | | | | | * gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.5.1. [source]: Fetch from pypi. [propagated-inputs]: Add python-legacy-api-wrap, python-packaging, python-patsy, and python-umap-learn. [native-inputs]: Add python-setuptools-scm.
* gnu: Add python-legacy-api-wrap.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/python-xyz.scm (python-legacy-api-wrap): New variable.
* gnu: Add python-get-version.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/python-xyz.scm (python-get-version): New variable.
* gnu: Add python-pytest-black.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/python-xyz.scm (python-pytest-black): New variable.
* gnu: python-black: Update to 19.10b0.Ricardo Wurmus2020-03-06
| | | | | | | * gnu/packages/python-xyz.scm (python-black): Update to 19.10b0. [arguments]: Patch tests. [propagated-inputs]: Add python-pathspec, python-regex, and python-typed-ast. [native-inputs]: Add python-setuptools-scm.
* gnu: Add python-pathspec.Ricardo Wurmus2020-03-06
| | | | * gnu/packages/python-xyz.scm (python-pathspec): New variable.
* gnu: python-tables: Use later hdf5 version.Ricardo Wurmus2020-03-06
| | | | | * gnu/packages/python-xyz.scm (python-tables)[inputs]: Replace hdf5 with hdf5-1.10.
* gnu: python-tables: Do not detect CPU features.Ricardo Wurmus2020-03-06
| | | | | * gnu/packages/python-xyz.scm (python-tables)[arguments]: Add phase "disable-tuning".
* gnu: java-openjfx-build: Add snippet.Björn Höfling2020-03-05
| | | | | * gnu/packages/java.scm (java-openjfx-build)[source]: Add snippet to remove bundled gradle.
* gnu: python-anndata: Update to 0.7.1.Ricardo Wurmus2020-03-05
| | | | | | | | * gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.1. [arguments]: Move check phase after install phase; delete one test. [propagated-inputs]: Add python-importlib-metadata, python-numcodecs, python-packaging, and python-zarr. [native-inputs]: Add python-joblib, python-pytest, and python-setuptools-scm.
* gnu: Add python-zarr.Ricardo Wurmus2020-03-05
| | | | * gnu/packages/python-xyz.scm (python-zarr): New variable.
* gnu: Add python-asciitree.Ricardo Wurmus2020-03-05
| | | | * gnu/packages/python-xyz.scm (python-asciitree): New variable.
* gnu: Add python-numcodecs.Ricardo Wurmus2020-03-05
| | | | * gnu/packages/python-xyz.scm (python-numcodecs): New variable.
* gnu: python-h5py: Update to 2.10.0.Ricardo Wurmus2020-03-05
| | | | | | * gnu/packages/python-xyz.scm (python-h5py): Update to 2.10.0. [inputs]: Use hdf5-1.10. [native-inputs]: Add pkg-config.
* gnu: Add emacs-ddskk.Masaya Tojo2020-03-05
| | | | * gnu/packages/emacs-xyz.scm (emacs-ddskk): New variable.
* gnu: libraqm: Parametrize version.Nicolas Goaziou2020-03-05
| | | | * gnu/packages/fontutils.scm (libraqm)[source]: Parametrize version.
* gnu: Add libraqm.Nicolas Goaziou2020-03-05
| | | | * gnu/packages/fontutils.scm (libraqm): New variable.
* gnu: sbcl-cl-webkit: Update to 20200227.Pierre Neidhardt2020-03-05
| | | | * gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 20200227.
* gnu: Add guile-xapian.Arun Isaac2020-03-05
| | | | * gnu/packages/guile-xyz.scm (guile-xapian, guile3.0-xapian): New variables.
* gnu: emacs-tldr: Update to 0-1.7203d1b.Arun Isaac2020-03-05
| | | | | * gnu/packages/emacs-xyz.scm (emacs-tldr): Update to 0-1.7203d1b. [propagated-inputs]: Add emacs-request.
* gnu: coq-mathcomp: Update home page URI.Björn Höfling2020-03-05
| | | | * gnu/packages/coq.scm (coq-mathcomp)[home-page]: Update URI.
* gnu: squashfs-tools: Update home page URI.Björn Höfling2020-03-05
| | | | * gnu/packages/compression.scm (squashfs-tools)[home-page]: Update URI.
* gnu: pbzip2: Use archived home-page.Björn Höfling2020-03-05
| | | | * gnu/packages/compression.scm (pbzip2)[home-page]: Load from archive.org
* gnu: domainfinder: Update home page URI.Björn Höfling2020-03-05
| | | | * gnu/packages/chemistry.scm (domainfinder)[home-page]: Update URI.
* gnu: nmoldyn: Upate home page URI.Björn Höfling2020-03-05
| | | | * gnu/packages/chemistry.scm (nmoldyn)[home-page]: Update URI.
* gnu: SuiteSparse: Update to 5.7.1.Felix Gruber2020-03-04
| | | | | | | | | | | | | | * gnu/packages/maths.scm (suitesparse): Update to 5.7.1. [source]: The latest releases of SuiteSparse have only been published on GitHub. Fetch from git tag as GitHub releases page only contains autogenerated tarballs that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to find SuiteSparse_config. [arguments]: Add CMake flags used by new components GraphBLAS and Mongoose. [native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose. * gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: ceph: Update to 14.2.8.Marius Bakke2020-03-04
| | | | | | | | * gnu/packages/patches/ceph-boost-compat.patch, gnu/packages/patches/ceph-volume-respect-PATH.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/storage.scm (ceph): Update to 14.2.8. [source](patches): Remove obsolete.
* gnu: i3-wm: Update to 4.18.Marius Bakke2020-03-04
| | | | * gnu/packages/wm.scm (i3-wm): Update to 4.18.
* gnu: kodi: Update to 18.6.Marius Bakke2020-03-04
| | | | * gnu/packages/kodi.scm (kodi): Update to 18.6.
* gnu: libgit2: Update to 0.99.0.Marius Bakke2020-03-04
| | | | | | | | | | | | | | * gnu/packages/patches/libgit2-avoid-python.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/version-control.scm (libgit2): Update to 0.99.0. [source](patches): Remove 'libgit2-avoid-python.patch'. [source](snippet): Preserve bundled copy of http-parser. [arguments]: Remove "-DUSE_SHA1DC" from #:configure-flags, which is no longer optional and enabled by default. Add "-DUSE_NTLMCLIENT=OFF" and "-DREGEX_BACKEND=pcre2". Add phase 'fix-pcre2-reference'. [inputs]: Remove HTTP-PARSER. [propagated-inputs]: Add PCRE2. [native-inputs]: Remove GUILE-2.2. Add PYTHON.
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