| Commit message (Collapse) | Author | Age |
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* gnu/packages/python.scm (python-gevent): Update to 1.3.7.
[arguments]: Find headers for greenlet in phase "do-not-use-bundled-sources".
[propagated-inputs]: Add python-objgraph.
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* gnu/packages/python.scm (python-objgraph): New variable.
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* gnu/packages/bioinformatics.scm (python-loompy)[propagated-inputs]: Remove
python-typing.
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* gnu/packages/patches/podofo-cmake-3.12.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (podofo)[source]: Add patch.
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* gnu/packages/audio.scm (jalv)[arguments]: Build with python-2.
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* gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.1.
[source](patches): Remove.
[arguments]: Skip network tests with pytest instead of deleting files. Make
sure $HOME is writable.
(python2-scikit-learn): Rewrite in terms of PACKAGE-WITH-PYTHON2.
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* gnu/packages/python.scm (python-tblib)[arguments]: Add 'adjust-tests' phase.
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* gnu/packages/python.scm (python-numpy): Update to 1.15.4.
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* gnu/packages/c.scm (libbytesize)[sources](modules, snippet): New
fields.
[arguments]: Add #:configure-flags and #:phases.
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* gnu/packages/patches/emacs-pdf-tools-poppler.patch: New file.
* gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Switch to
GIT-FETCH.
[arguments]: In 'emacs-patch-variables' phase, make files writable.
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* gnu/packages/patches/casync-renameat2-declaration.patch: New file.
* gnu/packages/sync.scm (casync)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/fltk.scm (ntk)[inputs]: Add python-waf.
[arguments]: Add custom phase to replace vendored waf.
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Fixes <https://bugs.gnu.org/25634>.
* gnu/packages/python.scm (python-waf): Replace custom 'install phase to
install "waf" binary into the bin directory. Remove the 'wrap phase.
* gnu/packages/video.scm (mpv)[arguments]: Adjust the 'setup-waf phase
accordingly.
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* gnu/packages/python.scm (python-astroid): Update to 2.0.4.
[source]: Switch to pypi source.
[native-inputs]: Add python-dateutil, python-nose, python-pytest,
python-pytest-runner.
[arguments]: Add phase to remove spurious test failure. Update custom
'check phase.
(python2-astroid): Update to 1.6.5.
[source]: Use pypi source.
[arguments]: Add phase to remove spurious test failure.
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Version 2.28 of glibc is the first in a long time that fully supports
GNU/Hurd. This change updates the Hurd and Mach to provide the features
glibc 2.28 expects and adjusts the cross-compilation tool chain for
"i586-pc-gnu".
* gnu/packages/base.scm (glibc/linux): Rename to...
(glibc): ... this.
[propagated-inputs]: Add 'hurd-target?' case.
[arguments]: Use '--disable-werror' when 'hurd-target?'. Add
'augment-libc.so' phase when 'hurd-target?'.
[native-inputs]: Add MIG and PERL when 'hurd-target?'.
(glibc/hurd, glibc-for-target): Remove
(glibc/hurd-headers): Inherit from GLIBC, not GLIBC/HURD.
[arguments]: Remove "--enable-obsolete-rpc" configure flag and
'patch-configure-script' phase.
* gnu/packages/cross-base.scm (cross-kernel-headers)[xglibc/hurd-headers]:
Move 'set-cross-headers-path' after 'unpack'.
* gnu/packages/cross-base.scm (cross-libc)[cross-libc-for-target]:
Remove.
Pass "--disable-werror" when TARGET matches 'hurd-triplet?'.
* gnu/packages/hurd.scm (hurd-target?, patch-url): New procedures.
(gnumach-headers)[source](patches, modules, snippet): New fields.
(hurd-headers): Use Git commit 98b3390.
[native-inputs]: Add AUTOCONF and AUTOMAKE.
[arguments]: Add "ac_cv_func_*" configure flags.
(hurd-minimal)[native-inputs]: Remove.
[arguments]: In 'build' phase, build "include/assert-backtrace.h"
first.
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* gnu/packages/spice.scm (spice)[arguments]: Add #:parallel-tests?.
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* gnu/packages/patches/qt-5-renameat2.patch: New file.
* gnu/packages/qt.scm (qt)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/web.scm (linkchecker)[source]: Add missing 'file-name'
field.
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* gnu/packages/check.scm (python-pytest-localserver): Update to 0.5.0.
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* gnu/packages/check.scm (python-pytest-localserver): Replace custom
'check phase.
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The source lacks a standard bootstrap script so the bootstrap phase is
skipped otherwise.
* gnu/packages/textutils.smc (libgtextutils)[arguments]: Replace
'bootstrap phase with upstream's bootstrap phase.
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Tests would fail once certificates had expired, along these lines:
chains.sh: Verifying certificate(s) PayPalEE.cert with flags -d AllDB -pp -o OID.2.16.840.1.114412.1.1
vfychain -d AllDB -pp -vv -o OID.2.16.840.1.114412.1.1 /tmp/guix-build-nss-3.39.drv-0/nss-3.39/nss/tests/libpkix/certs/PayPalEE.cert
Chain is bad!
PROBLEM WITH THE CERT CHAIN:
CERT 0. PayPalEE :
ERROR -8181: Peer's Certificate has expired.
Returned value is 1, expected result is pass
Using 'faketime' allows us to get deterministic results.
* gnu/packages/gnuzilla.scm (nss)[arguments]: In 'check' phase, run
'all.sh' under 'faketime'.
[native-inputs]: Add LIBFAKETIME.
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* gnu/packages/check.scm (libfaketime): New variable.
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* gnu/packages/bioinformatics.scm (bamtools, ribotaper, bioawk)
(codingquarry, fraggenescan, minced, pplacer, star, subread, sailfish)
(salmon): Return #t from all phases and snippets, use 'invoke' where
appropriate, and remove vestigal plumbing.
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* gnu/packages/databases.scm (4store, go-gopkg.in-mgo.v2, mongodb)
(sparql-query, tdb, sqlcipher, python-sqlparse, mongo-tools): Return #t from
all phases, use invoke where appropriate, and remove vestigial plumbing.
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* gnu/packages/compression.scm (perl-compress-raw-zlib, java-snappy)
(java-iq80-snappy, pzstd, java-tukaani-xz): Return #t from all phases.
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* gnu/packages/check.scm (cmdtest, python-pytest-cov, python-fixtures)
(python-pytest-localserver, python-pytest-flakes)
(python2-coverage-test-runner, python-pylint, python-behave-web-api):
Return #t from all phases, and use invoke where appropriate.
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* gnu/packages/audio.scm (clalsadrv, jack-2, libsbsms, zita-convolver)
(zita-resampler, zita-alsa-pcmi, gsm, cava): Return #t from all phases.
(ladspa): Use 'modify-phases'. Return #t from all phases.
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* gnu/packages/xorg.scm (xcompmgr)
* gnu/packages/xdisorg.scm (xdotool, scrot, unclutter, xscreensaver)
(tint2, nxbelld, xautolock): Return #t from all phases.
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* gnu/packages/xml.scm (python-libxml2, perl-xml-sax, xlsx2csv, libxls)
(java-kxml2): Return #t from all phases.
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* gnu/packages/video.scm (youtube-dl-gui, avidemux, xvid, twitchy, aegisub):
Return #t from all phases, use invoke where appropriate, and remove vestigial
plumbing.
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* gnu/packages/gd.scm (perl-gd-securityimage)
* gnu/packages/libevent.scm (perl-ev)
* gnu/packages/markup.scm (perl-text-markdown-discount)
* gnu/packages/perl-check.scm (perl-test2-bundle-extended)
* gnu/packages/perl.scm (perl-digest-md5, perl-encode-hanextra)
(perl-ipc-run, perl-pathtools)
* gnu/packages/photo.scm (perl-image-exiftool): Return #t from all phases.
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* gnu/packages/networking.scm (miredo, tcp-wrappers, librdkafka, ifstatus)
(iodine, httpstat, perl-socket6, perl-netaddr-ip, libproxy, openvswitch)
(libnet, asio): Return #t from all phases.
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* gnu/packages/linux.scm (iproute, ntfs-3g, cpupower, radeontop, tlp):
Return #t from all phases.
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* gnu/packages/image.scm (libpng-apng, pngcrush, leptonica, zimg)
(perceptualdiff): Return #t from all phases.
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* gnu/packages/admin.scm (daemon-tools, rottlog, wpa-supplicant-minimal)
(wakelan, cpulimit, nmap, sunxi-tools): Return #t from all phases.
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This is a followup to commit be200ef316478585059041a33d8f4287017dea5a.
* gnu/packages/tex.scm (texlive-bin)[arguments]: In
'disable-failing-test' phase, escape "|" characters.
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* gnu/packages/admin.scm (aide)[inputs]: Add PCRE:STATIC and ZLIB:STATIC.
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* gnu/packages/patches/python-cffi-x87-stack-clean.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/libffi.scm (python-cffi)[source](patches): Add it.
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* gnu/packages/python.scm (python-yapf): Update to 0.24.0.
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* gnu/packages/databases.scm (python-rq): Update to 0.12.0.
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* gnu/packages/python.scm (python-pyclipper)[arguments]: Enable tests.
[native-inputs]: Add python-pytest, python-pytest-runner,
python-unittest2.
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* gnu/packages/python.scm (python-pyclipper): Update to 1.1.0post1.
[source]: Add snippet to remove cythonized source files.
[arguments]: Add custom phase to generate cythonized files.
[native-inputs]: Add python-cython.
[description]: Update clipper library version.
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* gnu/packages/python-web.scm (python-paste): Update to 3.0.4.
[source]: Remove patch, add snippet to remove one test.
[native-inputs]: Add python-pytest, python-pytest-runner.
* gnu/packages/patches/python-paste-remove-website-test.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/python.scm (python-networkx2): Remove variable.
* gnu/packages/patches/python-networkx2-reproducible-build.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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