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* gnu: emacs-auctex: Add arguments to work with new `install' phase.•••* gnu/packages/emacs.scm (emacs-auctex)[arguments]: Add #:include and #:exclude arguments. Arun Isaac2017-05-23
* gnu: emacs-slime: Add arguments to work with new `install' phase.•••* gnu/packages/emacs.scm (emacs-slime)[arguments]: Add #:include and #:exclude arguments. Arun Isaac2017-05-23
* gnu: diamond: Update to 0.9.1.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.1. Ben Woodcroft2017-05-22
* gnu: Remove GCJ.•••* gnu/packages/patches/gcj-arm-mode.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Delete it. * gnu/packages/gcc.scm (javac.in, gcj, ecj-bootstrap): Remove variables. Ricardo Wurmus2017-05-22
* gnu: ant: Implement in terms of ant/java8.•••* gnu/packages/java.scm (ant): Inherit from ant/java8. Ricardo Wurmus2017-05-22
* gnu: Add ant/java8.•••* gnu/packages/java.scm (ant/java8): New variable. Ricardo Wurmus2017-05-22
* gnu: ant: Move after bootstrap packages.•••* gnu/packages/java.scm (ant): Move package. Ricardo Wurmus2017-05-22
* gnu: ant: Delete bundled jars.•••* gnu/packages/java.scm (ant)[source]: Delete bundled jars in a snippet. Ricardo Wurmus2017-05-22
* gnu: ant: Inherit from ant-bootstrap.•••* gnu/packages/java.scm (ant)[build-system] [home-page][synopsis][description][license]: Remove fields. [arguments]: Adapt arguments of ant-bootstrap package. Ricardo Wurmus2017-05-22
* gnu: clojure: Move below bootstrap packages.•••* gnu/packages/java.scm (clojure): Move package. Ricardo Wurmus2017-05-22
* gnu: java-swt: Move below the bootstrap packages.•••* gnu/packages/java.scm (java-swt): Move the package. Ricardo Wurmus2017-05-22
* gnu: icedtea-7: Use icedtea-6 for bootstrapping.•••* gnu/packages/java.scm (icedtea-7)[source]: Remove Makefile.in patch to link with GCJ libs. [arguments]: Remove (ice-9 rdelim) module; adjust configure flags; do not add GCJ headers to CPATH in build phase "set-additional-paths". [native-inputs]: Remove gcj and ant; add icedtea-6 and ant-bootstrap. Remove autoconf and automake. (icedtea-8)[native-inputs]: Delete "icedtea" from the inherited inputs, not "gcj". Ricardo Wurmus2017-05-22
* gnu: Add icedtea-6.•••* gnu/packages/java.scm (icedtea-6): New variable. Ricardo Wurmus2017-05-22
* gnu: Add ecj-javac-on-jamvm-wrapper-final.•••* gnu/packages/java.scm (ecj-javac-on-jamvm-wrapper-final): New variable. Ricardo Wurmus2017-05-22
* gnu: Add jamvm.•••* gnu/packages/java.scm (jamvm): New variable. Ricardo Wurmus2017-05-22
* gnu: Add classpath-devel.•••* gnu/packages/java.scm (classpath-devel): New variable. Ricardo Wurmus2017-05-22
* gnu: Add ecj-javac-on-jamvm-wrapper.•••* gnu/packages/java.scm (ecj-javac-on-jamvm-wrapper): New variable. Ricardo Wurmus2017-05-22
* gnu: Add classpath-jamvm-wrappers.•••* gnu/packages/java.scm (classpath-jamvm-wrappers): New variable. Ricardo Wurmus2017-05-22
* gnu: Add jamvm-bootstrap.•••* gnu/packages/java.scm (jamvm-bootstrap): New variable. Ricardo Wurmus2017-05-22
* gnu: Add classpath.•••* gnu/packages/java.scm (classpath): New variable. Ricardo Wurmus2017-05-22
* gnu: Add ecj-javac-wrapper.•••* gnu/packages/java.scm (ecj-javac-wrapper): New variable. Ricardo Wurmus2017-05-22
* gnu: Add ecj-bootstrap.•••* gnu/packages/java.scm (ecj-bootstrap): New variable. Ricardo Wurmus2017-05-22
* gnu: Add ant-bootstrap.•••* gnu/packages/java.scm (ant-bootstrap): New variable. Ricardo Wurmus2017-05-22
* gnu: Add sablevm.•••* gnu/packages/java.scm (sablevm): New variable. Ricardo Wurmus2017-05-22
* gnu: Add sablevm-classpath.•••* gnu/packages/java.scm (sablevm-classpath): New variable. Ricardo Wurmus2017-05-22
* gnu: Add jikes.•••* gnu/packages/java.scm (jikes): New variable. Ricardo Wurmus2017-05-22
* gnu: Add r-edaseq.•••* gnu/packages/bioinformatics.scm (r-edaseq): New variable. Ricardo Wurmus2017-05-22
* gnu: Add r-deseq.•••* gnu/packages/bioinformatics.scm (r-deseq): New variable. Ricardo Wurmus2017-05-22
* gnu: Add r-aroma-light.•••* gnu/packages/bioinformatics.scm (r-aroma-light): New variable. Ricardo Wurmus2017-05-22
* Merge branch 'version-0.13.0'Marius Bakke2017-05-22
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| * gnu: guix: Update to a6d728b.Ludovic Courtès2017-05-21
| * gnu: guix: Update to 0.13.0.Ludovic Courtès2017-05-21
| * gnu: unionfs-fuse-static: Remove 'unionfsctl' executable.•••This avoids pulling in glibc & co. Fixes a regression introduced in 2f861edf5cf5118ad560737343312c9a5efe5b2f (the 'unionfsctl' executable did not exist in unionfs-fuse 0.26). * gnu/packages/linux.scm (unionfs-fuse/static)[arguments] <post-install>: Remove 'unionfsctl' binary. Ludovic Courtès2017-05-21
| * gnu: icedtea@2: Update to 2.6.10 [security fixes].•••Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}. * gnu/packages/java.scm (icedtea-7): Update to 2.6.10. Leo Famulari2017-05-20
| * gnu: dropbear: Update to 2017.75 [fixes CVE-2017-{9078,9079}].•••* gnu/packages/ssh.scm (dropbear): Update to 2017.75. Leo Famulari2017-05-20
| * gnu: guile-ssh: Fix potential double-free/use-after-free issue.•••Fixes <http://bugs.gnu.org/26976>. Reported by Mark H Weaver <mhw@netris.org>. * gnu/packages/patches/guile-ssh-double-free.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ssh.scm (guile-ssh)[source](patches): Add it. Ludovic Courtès2017-05-20
| * gnu: aspell: 'dict-dir' set to ~/.guix-profile/lib/aspell or $ASPELL_DICT_DIR.•••See <https://bugs.gnu.org/25836> for background. * gnu/packages/patches/aspell-default-dict-dir.patch: New file. * gnu/packages/aspell.scm (aspell)[source](patches): New field. [native-search-paths]: New field. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès2017-05-20
| * gnu: qemu: Fix CVE-2017-7493.•••* gnu/packages/patches/qemu-CVE-2017-7493.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/qemu.scm (qemu)[source]: Use it. Leo Famulari2017-05-20
| * gnu: glibc/hurd: Do not apply i686 patch.•••This is a follow-up to commit c2e4f14ac8cd3e1ce7f46a192ad0c9acc084b210. * gnu/packages/base.scm (glibc/hurd)[arguments]: Override pre-configure phase with a copy that does not include the patch application. Ricardo Wurmus2017-05-20
| * gnu: glibc/hurd: Use modify-phases syntax.•••* gnu/packages/base.scm (glibc/hurd)[arguments]: Use modify-phases syntax. Ricardo Wurmus2017-05-20
| * gnu: tor: Update to 0.3.0.7.•••* gnu/packages/tor.scm (tor): Update to 0.3.0.7. Efraim Flashner2017-05-20
| * gnu: guix: Update snapshot.•••* gnu/packages/package-management.scm (guix): Update to ce92d26. Ludovic Courtès2017-05-16
* | gnu: vte-ng: Update to 0.48.3.a.•••* gnu/packages/gnome.scm (vte-ng): Update to 0.48.3.a. Marius Bakke2017-05-22
* | gnu: gexiv2: Update to 0.10.6.•••* gnu/packages/gnome.scm (gexiv2): Update to 0.10.6. Marius Bakke2017-05-22
* | gnu: dconf-editor: Update to 3.22.3.•••* gnu/packages/gnome.scm (dconf-editor): Update to 3.22.3. Marius Bakke2017-05-22
* | gnu: aisleriot: Update to 3.22.2.•••* gnu/packages/gnome.scm (aisleriot): Update to 3.22.2. Marius Bakke2017-05-22
* | gnu: vte: Update to 0.48.3.•••* gnu/packages/gnome.scm (vte): Update to 0.48.3. Marius Bakke2017-05-22
* | gnu: fraggenescan: Update to 1.30.•••* gnu/packages/bioinformatics.scm (fraggenescan): Update to 1.30. [arguments]: Update patching of paths, install procedure. Add new test case. Ben Woodcroft2017-05-22
* | gnu: roary: Update to 3.8.2.•••* gnu/packages/bioinformatics.scm (roary): Update to 3.8.2. Ben Woodcroft2017-05-22
* | gnu: taxtastic: Update to 0.6.4.•••* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.6.4. [source]: Use PyPI URI. Ben Woodcroft2017-05-22