| Commit message (Collapse) | Author | Age |
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* gnu/packages/cran.scm (r-ouch): New variable.
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* gnu/packages/cran.scm (r-activity): New variable.
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* gnu/packages/cran.scm (r-circular): New variable.
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* gnu/packages/cran.scm (r-overlap): New variable.
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* gnu/packages/cran.scm (r-acdm): New variable.
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* gnu/packages/cran.scm (r-acd): New variable.
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* gnu/packages/cran.scm (r-abn): New variable.
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* gnu/packages/cran.scm (r-rjags): New variable.
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* gnu/packages/statistics.scm (jags): New variable.
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* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Update to 3.4.4.
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* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.14.0.
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* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.7.0.
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* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 1.2.0.
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Fixes <https://bugs.gnu.org/33346>.
* gnu/packages/spice.scm (spice-vdagent)[arguments]: Fix typo in
'patch-spice-vdagent.desktop' phase.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-14.
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* gnu/packages/ssh.scm (libssh)[source]: Use HTTPS URL.
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* gnu/packages/shellutils.scm (direnv)[native-inputs]: Remove go.
[inputs]: Add go-1.9.
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* gnu/packages/patches/poppler-CVE-2018-19149.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler/fixed): New variable.
(poppler-qt4, poppler-qt5): Use package/inherit.
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* gnu/packages/tls.scm (certbot, python-acme): Update to 0.28.0.
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* gnu/packages/package-management.scm (guix): Update to f5a2724.
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* gnu/packages/backup.scm (restic)[arguments]: Set "HOME" environment variable
in build phase.
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* gnu/packages/messaging.scm (c-toxcore)[source]: Fetch from git.
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* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.20.
* gnu/packages/wine.scm (wine-staging): Update to 3.20.
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* gnu/packages/php.scm (php): Update to 7.2.12.
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* gnu/packages/video.scm (youtube-dl): Update to 2018.11.07.
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* gnu/packages/vim.scm (vifm): Update to 0.10.
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* gnu/packages/golang.scm (go-github-com-aarzilli-golua)[arguments]: Fix for go-1.11.
[native-inputs]: Remove lua.
[propagated-inputs]: Add lua.
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* gnu/packages/golang.scm (go-github-com-wtolson-go-taglib)[arguments]: Fix tests for go-1.11.
[native-inputs]: Remove pkg-config and taglib.
[propagated-inputs]: Add pkg-config and taglib.
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* gnu/packages/syncthing.scm (go-gopkg.in-asn1-ber.v1): Fix tests for go-1.11.
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* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-cli): Fix tests for go-1.11.
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* gnu/packages/syncthing.scm (go-github-com-prometheus-common-expfmt): Fix tests for go-1.11.
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* gnu/packages/golang.scm (go): Update default to 1.11.
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* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.20.1.
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* gnu/packages/cran.scm (r-rcmdcheck): Update to 1.3.2.
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* gnu/packages/cran.scm (r-ggpubr): Update to 0.1.9.
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* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.8.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.4.0.
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* gnu/packages/statistics.scm (r-rtsne): Update to 0.15.
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* gnu/packages/statistics.scm (r-lme4): Update to 1.1-19.
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This is a follow-up to commit 0ead0b4d2c025ad1b4a293fb6cbb8a578b7dd87d.
* gnu/packages/webkit.scm (webkitgtk)[arguments]: Remove hard coded file list.
(webkitgtk-2.22)[arguments]: Inherit phases using SUBSTITUTE-KEYWORD-ARGUMENTS.
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* gnu/packages/messaging.scm (libtoxcore): Update to 0.0.0-2.bf69b54.
[native-inputs]: Add check.
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* gnu/packages/mail.scm (mumi): Update to 0.0.0-2.bfd96ce7.
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* gnu/packages/databases.scm (postgresql): Update to 10.6.
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* gnu/packages/webkit.scm (webkitgtk): Include documentation.
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* gnu/packages/gtk.scm (gtk-doc): Use local docbook-xsl.
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* gnu/packages/audio.scm (faust-2): Update to 2.5.23.
[native-inputs]: Replace llvm-with-rtti with llvm-3.8-with-rtti.
* gnu/packages/llvm.scm (llvm-with-rtti): Rename this variable...
(llvm-3.8-with-rtti): ...to this variable; inherit from llvm-3.8.
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