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* gnu: Add texlive-latex-overpic.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/tex.scm (texlive-latex-overpic): New variable.
* gnu: Add texlive-latex-multirow.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/tex.scm (texlive-latex-multirow): New variable.
* gnu: Add texlive-latex-jknapltx.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/tex.scm (texlive-latex-jknapltx): New variable.
* gnu: Add texlive-latex-listings.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/tex.scm (texlive-latex-listings): New variable.
* gnu: Add texlive-latex-footmisc.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/tex.scm (texlive-latex-footmisc): New variable.
* gnu: Add texlive-latex-float.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/tex.scm (texlive-latex-float): New variable.
* gnu: Add texlive-latex-fancyvrb.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/tex.scm (texlive-latex-fancyvrb): New variable.
* gnu: Add texlive-latex-fancyhdr.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/tex.scm (texlive-latex-fancyhdr): New variable.
* gnu: Add texlive-latex-fancybox.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/tex.scm (texlive-latex-fancybox): New variable.
* gnu: Add texlive-latex-colortbl.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/tex.scm (texlive-latex-colortbl): New variable.
* gnu: Add texlive-latex-changebar.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/tex.scm (texlive-latex-changebar): New variable.
* gnu: Add texlive-latex-appendix.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/tex.scm (texlive-latex-appendix): New variable.
* gnu: Add texlive-latex-anysize.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/tex.scm (texlive-latex-anysize): New variable.
* gnu: Add texlive-latex-amsfonts.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/tex.scm (texlive-latex-amsfonts): New variable.
* gnu: Add texlive-fonts-amsfonts.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/tex.scm (texlive-fonts-amsfonts): New variable.
* gnu: texlive-generic-ifxetex: Fix description.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/tex.scm (texlive-generic-ifxetex)[description]: Fix typo.
* gnu: texlive-latex-oberdiek: Build ifpdf package.Ricardo Wurmus2017-07-09
| | | | | | * gnu/packages/tex.scm (texlive-latex-oberdiek)[arguments]: Only build the "oberdiek.ins" package (which includes all other packages); patch file to build "ifpdf.dtx" instead of "ifpdf.ins".
* gnu: texlive-latex-base: Fix xetex and xelatex formats.Ricardo Wurmus2017-07-09
| | | | | * gnu/packages/tex.scm (texlive-latex-base)[arguments]: Build xetex and xelatex formats with matching interpreters.
* gnu: deeptools: Update to 2.5.1.Ricardo Wurmus2017-07-09
| | | | | | | * gnu/packages/bioinformatics.scm (deeptools): Update to 2.5.1. [arguments]: Remove. [native-inputs]: Use "python-" instead of "python2-" variants. [inputs]: Likewise; add python-py2bit.
* gnu: Add python-py2bit.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/bioinformatics.scm (python-py2bit): New variable.
* gnu: Add java-jgit-4.2.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/version-control.scm (java-jgit-4.2): New variable.
* gnu: Add java-jgit.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/version-control.scm (java-jgit): New variable.
* gnu: Add java-slf4j-api.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/java.scm (java-slf4j-api): New variable.
* gnu: Add java-javaewah.Ricardo Wurmus2017-07-09
| | | | * gnu/packages/java.scm (java-javaewah): New variable.
* gnu: Add java-classpathx-servletapiRicardo Wurmus2017-07-09
| | | | * gnu/packages/java.scm (java-classpathx-servletapi): New variable.
* gnu: youtube-dl: Update to 2017.07.09.Tobias Geerinckx-Rice2017-07-09
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2017.07.09.
* gnu: libjpeg-turbo: Update to 1.5.2.Marius Bakke2017-07-09
| | | | | * gnu/packages/image.scm (libjpeg-turbo): Update to 1.5.2. [arguments]<#:phases>: Remove.
* gnu: you-get: Update to 0.4.775.Feng Shu2017-07-09
| | | | | | * gnu/packages/video.scm (you-get): Update to 0.4.775. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
* gnu: poppler: Use an ABI-compatible replacement to fix CVE-2017-9776.Leo Famulari2017-07-09
| | | | | | | | | | | | | | | | This is a followup to commit 95bbaa02aa63bc5eae36f686f1ed9915663aa4cf. See <https://bugs.gnu.org/27621> for more information. Poppler 0.56.0's ABI is not compatible with Poppler 0.52.0, so it's not possible to graft the newer version in place of the older one. This change leaves CVE-2017-9775 unfixed for now. * gnu/packages/patches/poppler-CVE-2017-9776.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (poppler-0.56.0): Replace with ... (poppler/fixed): ... new variable. (poppler)[replacement]: Replaced with poppler/fixed.
* gnu: sshuttle: Update to 0.78.3.Tobias Geerinckx-Rice2017-07-09
| | | | * gnu/packages/vpn.scm (sshuttle): Update to 0.78.3.
* gnu: wxmaxima: Update to 17.05.0.Kei Kebreau2017-07-08
| | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 17.05.0. [source]: Update URL and add file-name. [native-inputs]: Add autoconf, automake and gettext-minimal. [arguments]: Add 'autoconf' phase.
* gnu: font-gnu-unifont: Update to 10.0.04.Efraim Flashner2017-07-08
| | | | * gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.04.
* gnu: blast+: Update to 2.6.0.Ben Woodcroft2017-07-08
| | | | | | | | | * gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0. [origin]: Remove bundled pcre. Add patch. [arguments]: Replace paths in run_with_lock.c. Configure with pcre. [inputs]: Add pcre, perl, python. * gnu/packages/patches/blast+-fix-makefile.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: maxima: Ensure gcc is available at runtime.Kei Kebreau2017-07-07
| | | | | * gnu/packages/maths.scm (maxima)[inputs]: Add gcc. [arguments]: Use modify-phases syntax. Add 'set-gcc-path' phase.
* gnu: perl-dbd-mysql: Update to 4.043.Leo Famulari2017-07-07
| | | | * gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.043.
* gnu: python-pyopenssl: Fix test failure on 32-bit platforms.Marius Bakke2017-07-07
| | | | | | * gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-pyopenssl)[source]: Use it.
* gnu: irssi: Update to 1.0.4 [fixes CVE-2017-{10965,10966}].Leo Famulari2017-07-07
| | | | * gnu/packages/irc.scm (irssi): Update to 1.0.4.
* gnu: webkitgtk: Update to 2.16.5.Mark H Weaver2017-07-07
| | | | * gnu/packages/webkit.scm (webkitgtk): Update to 2.16.5.
* gnu: rdma-core: Update to 14.Tobias Geerinckx-Rice2017-07-07
| | | | * gnu/packages/linux.scm (rdma-core): Update to 14.
* gnu: catimg: Update to 2.3.2.Tobias Geerinckx-Rice2017-07-07
| | | | * gnu/packages/image-viewers.scm (catimg): Update to 2.3.2.
* gnu: python-parsedatetime: Update to 2.4.Leo Famulari2017-07-07
| | | | | * gnu/packages/python.scm (python-parsedatetime, python2-parsedatetime): Update to 2.4.
* gnu: python-icalendar: Update to 3.11.5.Leo Famulari2017-07-07
| | | | * gnu/packages/python.scm (python-icalendar): Update to 3.11.5.
* gnu: libtiff: Fix CVE-2017-{9936,10688}.Alex Vong2017-07-07
| | | | | | | | | * gnu/packages/patches/libtiff-CVE-2017-9936.patch, gnu/packages/patches/libtiff-CVE-2017-10688.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/image.scm (libtiff-4.0.8)[source]: Use them. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: xorg-server: Fix CVE-2017-{10971,10972}.Kei Kebreau2017-07-06
| | | | | | | | | * gnu/packages/patches/xorg-server-CVE-2017-10971.patch, gnu/packages/patches/xorg-server-CVE-2017-10972.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/xorg.scm (xorg-server)[source]: Use them. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: youtube-dl: Update to 2017.07.02.Alex Vong2017-07-07
| | | | | | * gnu/packages/video.scm (youtube-dl): Update to 2017.07.02. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
* Revert "gnu: blast+: Update to 2.6.0."Leo Famulari2017-07-06
| | | | This reverts commit 18dea67dc3a42d782b34b551304748346f173184.
* gnu: shadow: Correctly match the system type.Ludovic Courtès2017-07-07
| | | | | * gnu/packages/admin.scm (shadow)[inputs]: Use 'string-contains' instead of 'string-prefix?' when matching the system type.
* gnu: linux-libre@4.9: Update to 4.9.36.Mark H Weaver2017-07-06
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.36.
* gnu: linux-libre@4.4: Update to 4.4.76.Mark H Weaver2017-07-06
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.76.
* gnu: iproute: Update to 4.12.0.Tobias Geerinckx-Rice2017-07-06
| | | | * gnu/packages/linux.scm (iproute): Update to 4.12.0.
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