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* Merge branch 'master' into core-updatesMark H Weaver2018-04-30
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| * gnu: linux-libre: Update to 4.16.6.Mark H Weaver2018-04-30
| | | | | | | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.16.6. (%linux-libre-hash): Update hash.
| * gnu: linux-libre@4.14: Update to 4.14.38.Mark H Weaver2018-04-30
| | | | | | | | | | * gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.38. (%linux-libre-4.14-hash): Update hash.
| * gnu: linux-libre@4.9: Update to 4.9.97.Mark H Weaver2018-04-30
| | | | | | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.97.
| * gnu: linux-libre@4.4: Update to 4.4.130.Mark H Weaver2018-04-30
| | | | | | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.130.
| * gnu: Add java-apache-ivy.Julien Lepiller2018-04-29
| | | | | | | | | | | | | | * gnu/package/java.scm (java-apache-ivy): New variable. * gnu/packages/patches/java-apache-ivy-port-to-latest-bouncycastle.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
| * gnu: Add java-jsch-agentproxy-jsch.Julien Lepiller2018-04-29
| | | | | | | | * gnu/packages/java.scm (java-jsch-agentproxy-jsch): New variable.
| * gnu: Add java-jsch-agentproxy-connector-factory.Julien Lepiller2018-04-29
| | | | | | | | | | * gnu/packages/java.scm (java-jsch-agentproxy-connector-factory): New variable.
| * gnu: Add java-jsch-agentproxy-usocket-nc.Julien Lepiller2018-04-29
| | | | | | | | * gnu/packages/java.scm (java-jsch-agentproxy-usocket-nc): New variable.
| * gnu: Add java-jsch-agentproxy-pageant.Julien Lepiller2018-04-29
| | | | | | | | * gnu/packages/java.scm (java-jsch-agentproxy-pageant): New variable.
| * gnu: Add java-jsch-agentproxy-usocket-jna.Julien Lepiller2018-04-29
| | | | | | | | | | * gnu/packages/java.scm (java-jsch-agentproxy-usocket-jna): New variable.
| * gnu: Add java-jsch-agentproxy-sshagent.Julien Lepiller2018-04-29
| | | | | | | | * gnu/packages/java.scm (java-jsch-agentproxy-sshagent): New variable.
| * gnu: Add java-jsch-agentproxy-core.Julien Lepiller2018-04-29
| | | | | | | | * gnu/packages/java.scm (java-jsch-agentproxy-core): New variable.
| * gnu: Add java-bouncycastle.Julien Lepiller2018-04-29
| | | | | | | | | | | | * gnu/packages/java.scm (java-bouncycastle): New variable. (java-bouncycastle-bcprov, java-bouncycastle-bcpkix): Remove variable. (java-kafka-clients)[inputs]: Use java-bouncycastle.
| * gnu: Add u-boot-mx6cuboxi.Vagrant Cascadian2018-04-29
| | | | | | | | * gnu/packages/bootloaders.scm (u-boot-mx6cuboxi): New variable.
| * gnu: Add u-boot-wandboard.Vagrant Cascadian2018-04-29
| | | | | | | | * gnu/packages/bootloaders.scm (u-boot-wandboard): New variable.
| * gnu: make-u-boot-package: Install 'SPL' files also.Vagrant Cascadian2018-04-29
| | | | | | | | | | * gnu/packages/bootloaders.scm (make-u-boot-package)[arguments]: Add 'SPL' files to the files installed during custom 'install phase.
| * gnu: utf8proc: Update to 2.1.1.Tobias Geerinckx-Rice2018-04-29
| | | | | | | | * gnu/packages/textutils.scm (utf8proc): Update to 2.1.1.
| * gnu: Use HTTPS for julialang.org home pages.Tobias Geerinckx-Rice2018-04-29
| | | | | | | | | | * gnu/packages/textutils.scm (utf8proc)[home-page]: Use HTTPS. * gnu/packages/julia.scm (julia)[home-page]: Likewise
| * gnu: python-autopep8: Update to 1.3.5Fis Trivial2018-04-28
| | | | | | | | | | | | * gnu/packages/python.scm (python-autopep8): Update to 1.3.5 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add python-autogradFis Trivial2018-04-28
| | | | | | | | | | | | | | * gnu/packages/machine-learning.scm (python-autograd, python2-autograd): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: escpr: Update to 1.6.20.Diego Nicola Barbato2018-04-28
| | | | | | | | | | | | * gnu/packages/cups.scm (escpr): Update to 1.6.20. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: gcc-toolchain: Add "static" output.Ludovic Courtès2018-04-28
| | | | | | | | | | | | | | | | | | This allows the use of 'gcc-toolchain' to create statically-linked executables (requires libc.a.) * gnu/packages/commencement.scm (make-gcc-toolchain): Add "static" output. Add "libc-static" to 'inputs'. Add call to 'union-build' for the "static" output.
| * gnu: dfc: Update to 3.1.1.Kei Kebreau2018-04-28
| | | | | | | | * gnu/packages/admin.scm (dfc): Update to 3.1.1.
| * gnu: notmuch: Update to 0.26.2.Marius Bakke2018-04-28
| | | | | | | | * gnu/packages/mail.scm (notmuch): Update to 0.26.2.
| * gnu: godot: Update to 3.0.2.Marius Bakke2018-04-28
| | | | | | | | * gnu/packages/game-development.scm (godot): Update to 3.0.2.
| * gnu: godot: Remove unused bundled libraries from the source.Marius Bakke2018-04-28
| | | | | | | | | | | | | | | | While at it, also use system libvpx. * gnu/packages/game-development.scm (godot)[source](snippet): New field. [arguments]: Add "builtin_libvpx=no" to #:scons-flags. [inputs]: Add LIBVPX.
| * gnu: godot: Add a file extension to source file name.Marius Bakke2018-04-28
| | | | | | | | * gnu/packages/game-development.scm (godot)[source](file-name): Append ".tar.gz".
| * gnu: python-yapf: Update to 0.21.0.Fis Trivial2018-04-28
| | | | | | | | | | | | * gnu/packages/python.scm (python-yapf): Update to 0.21.0. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
| * gnu: mes: Update to 0.13.Jan Nieuwenhuizen2018-04-28
| | | | | | | | * gnu/packages/mes.scm (mes): Update to 0.13. Use new gitlab url scheme.
| * gnu: virt-manager: Update to 1.5.1.Roel Janssen2018-04-28
| | | | | | | | * gnu/packages/virtualization.scm (virt-manager): Update to 1.5.1.
| * gnu: fabric: Update to 1.14.0.Roel Janssen2018-04-28
| | | | | | | | | | * gnu/packages/admin.scm (fabric): Update to 1.14.0; [native-inputs]: Add python2-pynacl and python2-bcrypt.
| * gnu: roary: Update to 3.12.0.Roel Janssen2018-04-28
| | | | | | | | * gnu/packages/bioinformatics.scm (roary): Update to 3.12.0.
| * gnu: gnome-terminal: Update to 3.28.1.Roel Janssen2018-04-28
| | | | | | | | * gnu/packages/gnome.scm (gnome-terminal): Update to 3.28.1.
| * gnu: vte: Update to 0.52.1.Roel Janssen2018-04-28
| | | | | | | | * gnu/packages/gnome.scm (vte): Update to 0.52.1.
| * gnu: star: Update to 2.6.0a.Roel Janssen2018-04-28
| | | | | | | | * gnu/packages/bioinformatics.scm (star): Update to 2.6.0a.
| * gnu: multiqc: Update to 1.5.Roel Janssen2018-04-28
| | | | | | | | * gnu/packages/bioinformatics.scm (multiqc): Update to 1.5.
| * gnu: express: Link with shared protobuf library.Roel Janssen2018-04-28
| | | | | | | | | | * gnu/packages/bioinformatics.scm (express): Link with shared protobuf library.
| * gnu: Add r-codedepends.Ricardo Wurmus2018-04-28
| | | | | | | | * gnu/packages/cran.scm (r-codedepends): New variable.
| * gnu: bamtools: Update to 2.5.1.Roel Janssen2018-04-28
| | | | | | | | * gnu/packages/bioinformatics.scm (bamtools): Update to 2.5.1.
| * gnu: taxtastic: Update to 0.8.5.Roel Janssen2018-04-28
| | | | | | | | * gnu/packages/bioinformatics.scm (taxtastic): Update to 0.8.5.
| * gnu: nnn: Update to 1.7.Roel Janssen2018-04-28
| | | | | | | | * gnu/packages/admin.scm (nnn): Update to 1.7.
| * gnu: libstaroffice: Update to 0.0.6.Tobias Geerinckx-Rice2018-04-27
| | | | | | | | * gnu/packages/libreoffice.scm (libstaroffice): Update to 0.0.6.
| * gnu: perl-multidimensional: Update to 0.014.Tobias Geerinckx-Rice2018-04-27
| | | | | | | | * gnu/packages/perl.scm (perl-multidimensional): Update to 0.014.
| * gnu: perl-bareword-filehandles: Update to 0.006.Tobias Geerinckx-Rice2018-04-27
| | | | | | | | * gnu/packages/perl.scm (perl-bareword-filehandles): Update to 0.006.
| * gnu: vsearch: Update to 2.8.0.Ben Woodcroft2018-04-27
| | | | | | | | * gnu/packages/bioinformatics.scm (vsearch): Update to 2.8.0.
| * gnu: diamond: Update to 0.9.21.Ben Woodcroft2018-04-27
| | | | | | | | * gnu/packages/bioinformatics.scm (diamond): Update to 0.9.21.
| * gnu: emacs-websocket: Update to 1.10.Ricardo Wurmus2018-04-27
| | | | | | | | | | * gnu/packages/emacs.scm (emacs-websocket): Update to 1.10. [source]: Fetch from git.
| * gnu: r-robustbase: Update to 0.93-0.Ricardo Wurmus2018-04-27
| | | | | | | | * gnu/packages/statistics.scm (r-robustbase): Update to 0.93-0.
| * gnu: r-r-oo: Update to 1.22.0.Ricardo Wurmus2018-04-27
| | | | | | | | * gnu/packages/statistics.scm (r-r-oo): Update to 1.22.0.
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