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* gnu: perl-dbd-mysql: Update to 4.041 [security fix].Marius Bakke2016-11-28
| | | | | * gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.041. [source]: Update CPAN URI.
* gnu: Add r-gkmsvm.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/bioinformatics.scm (r-gkmsvm): New variable.
* gnu: Add r-rocr.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/statistics.scm (r-rocr): New variable.
* gnu: Add r-gplots.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/statistics.scm (r-gplots): New variable.
* gnu: Add r-gdata.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/statistics.scm (r-gdata): New variable.
* gnu: Add r-seqgl.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/bioinformatics.scm (r-seqgl): New variable.
* gnu: Add r-chipkernels.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/bioinformatics.scm (r-chipkernels): New variable.
* gnu: Add r-gtools.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/statistics.scm (r-gtools): New variable.
* gnu: Add r-kernlab.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/machine-learning.scm (r-kernlab): New variable.
* gnu: Add r-sfsmisc.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/statistics.scm (r-sfsmisc): New variable.
* gnu: Add r-wgcna.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/bioinformatics.scm (r-wgcna): New variable.
* gnu: Add r-fastcluster.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/statistics.scm (r-fastcluster): New variable.
* gnu: Add r-preprocesscore.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/statistics.scm (r-preprocesscore): New variable.
* gnu: Add r-dynamictreecut.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/statistics.scm (r-dynamictreecut): New variable.
* gnu: Add r-r4rna.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/bioinformatics.scm (r-r4rna): New variable.
* gnu: Add r-spams.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/statistics.scm (r-spams): New variable.
* gnu: Add r-googlesheets.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/statistics.scm (r-googlesheets): New variable.
* gnu: Add r-cellranger.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/statistics.scm (r-cellranger): New variable.
* gnu: Add r-rematch.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/statistics.scm (r-rematch): New variable.
* gnu: lv2: Update to 1.14.0.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/audio.scm (lv2): Update to 1.14.0.
* gnu: non-sequencer: Update to 1.9.5-2.a22f33f.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/music.scm (non-sequencer): Update to 1.9.5-2.a22f33f.
* gnu: ntp: Update to 4.2.8p9.Efraim Flashner2016-11-28
| | | | * gnu/packages/ntp.scm (ntp): Update to 4.2.8p9.
* gnu: ntp: Fix indentation.Efraim Flashner2016-11-28
| | | | * gnu/packages/ntp.scm (ntp): Fix indentation to only use spaces.
* gnu: Add editres.John Darrington2016-11-28
| | | | * gnu/packages/xorg.scm (editres): New variable.
* gnu: Add newick-utils.Ben Woodcroft2016-11-28
| | | | * gnu/packages/bioinformatics.scm (newick-utils): New variable.
* gnu: jasper: Update to 2.0.0 [fixes security issues].Efraim Flashner2016-11-27
| | | | | * gnu/packages/image.scm (jasper): Update to 2.0.0. [build-system]: Switch to cmake-build-system.
* gnu: gphoto2: Update to 2.5.11.Tobias Geerinckx-Rice2016-11-27
| | | | * gnu/packages/photo.scm (gphoto2): Update to 2.5.11.
* gnu: libgphoto2: Update to 2.5.11.Tobias Geerinckx-Rice2016-11-27
| | | | * gnu/packages/photo.scm (libgphoto2): Update to 2.5.11.
* gnu: beets: Update to 1.4.1.Leo Famulari2016-11-27
| | | | | * gnu/packages/music.scm (beets): Update to 1.4.1. [inputs]: Add python2-discogs-client.
* gnu: Add python-discogs-client.Leo Famulari2016-11-27
| | | | | * gnu/packages/music.scm (python-discogs-client, python2-discogs-client): New variables.
* gnu: python-rarfile: Update to 2.8.Leo Famulari2016-11-27
| | | | | | | * gnu/packages/python.scm (python-rarfile, python2-rarfile): Update to 2.8. [source]: Remove obsolete patch. * gnu/packages/patches/python-rarfile-fix-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: python-jellyfish: Update to 0.5.6.Leo Famulari2016-11-27
| | | | | * gnu/packages/python.scm (python-jellyfish, python2-jellyfish): Update to 0.5.6.
* gnu: python-pylast: Update 1.6.0.Leo Famulari2016-11-27
| | | | * gnu/packages/music.scm (python-pylast, python2-pylast): Update to 1.6.0.
* gnu: python-musicbrainzngs: Update to 0.6.Leo Famulari2016-11-27
| | | | | | * gnu/packages/music.scm (python-musicbrainzngs, python2-musicbrainzngs): Update to 0.6. [arguments]: Disable the test suites.
* gnu: python-munkres: Update to 1.0.8.Leo Famulari2016-11-27
| | | | * gnu/packages/python.scm (python-munkres, python2-munkres): Update to 1.0.8.
* gnu: python-mutagen: Update to 1.35.1.Leo Famulari2016-11-27
| | | | | * gnu/packages/music.scm (python-mutagen, python2-mutagen): Update to 1.35.1. [native-inputs]: Add python-pytest.
* gnu: gcj: Inherit source field from "gcc".Ricardo Wurmus2016-11-27
| | | | * gnu/packages/gcc.scm (gcj)[source]: Inherit source from "gcc" package.
* gnu: gcj: Correct paths in ARM patch.Ricardo Wurmus2016-11-27
| | | | * gnu/packages/patches/gcj-arm-mode.patch: Strip directories.
* gnu: notmuch: Update to 0.23.3.Marius Bakke2016-11-27
| | | | | * gnu/packages/mail.scm (notmuch): Update to 0.23.3. [arguments]: Re-enable previously failing tests.
* gnu: gcj: Fix typo in patch filename.Leo Famulari2016-11-27
| | | | | | | | This is a followup to commit dbf8f84f15fb80fa41caeed073460853083e48d3. Reported by quigonjinn on #guix. * gnu/packages/gcc.scm (gcj)[source]: Fix typo.
* gnu: python2-flask: Pick up python-flask's native-inputs.Danny Milosavljevic2016-11-27
| | | | | | | * gnu/packages/python.scm (python2-flask)[native-inputs]: Pick up python-flask's native-inputs. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: udisks: Update to 2.1.8.Marius Bakke2016-11-27
| | | | | * gnu/packages/freedesktop.scm (udisks): Update to 2.1.8. [home-page]: Use HTTPS.
* gnu: udisks: Add manpages.Maxim Cournoyer2016-11-27
| | | | | | | | * gnu/packages/freedesktop.scm (udisks)[native-inputs]: Add docbook-xml and docbook-xsl. [arguments]: Add #:make-flags to specify XML catalog files for manuals. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: gcj: Fix build on armhf.Ricardo Wurmus2016-11-27
| | | | | | | * gnu/packages/patches/gcj-arm-mode.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch. * gnu/packages/gcc.scm (gcj): Add patch. [arguments]: Delete failing tests.
* gnu: Add biber-2.5.Ricardo Wurmus2016-11-27
| | | | * gnu/packages/tex.scm (biber-2.5): New variable.
* gnu: Add biber.Ricardo Wurmus2016-11-27
| | | | * gnu/packages/tex.scm (biber): New variable.
* gnu: Add perl-text-bibtex.Ricardo Wurmus2016-11-27
| | | | * gnu/packages/tex.scm (perl-text-bibtex): New variable.
* gnu: Add perl-xml-libxslt.Ricardo Wurmus2016-11-27
| | | | * gnu/packages/xml.scm (perl-xml-libxslt): New variable.
* gnu: perl-unicode-linebreak: Update to 2016.003.Ricardo Wurmus2016-11-27
| | | | * gnu/packages/perl.scm (perl-unicode-linebreak): Update to 2016.003.
* gnu: Add perl-unicode-collate.Ricardo Wurmus2016-11-27
| | | | * gnu/packages/perl.scm (perl-unicode-collate): New variable.
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