| Commit message (Collapse) | Author | Age |
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This works with Ruby 2.5.
* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.2.
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The documentation on SourceForge is now located in the same directory as the
source code.
* gnu/packages/gnucash.scm (gnucash-docs): Update to 3.3.
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* gnu/packages/patches/gnucash-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnucash.scm (gnucash): Update to 3.3.
[source]: Add patch.
[arguments]: Add 'set-env-vars', 'glib-or-gtk-compile-schemas', and
'glib-or-gtk-wrap' phases.
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* gnu/packages/games.scm (bastet): New public variable.
* gnu/packages/patches/bastet-change-source-of-unordered_set.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/android.scm (fdroidserver): Update to 1.0.10.
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* gnu/packages/audio.scm (audacity)[source]: Use GIT-FETCH and GIT-FILE-NAME.
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* gnu/packages/ftp.scm (filezilla): Update to 3.37.4.
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* gnu/packages/ftp.scm (libfilezilla): Update to 0.14.0.
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* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Override make
flags.
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* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.2.
[source]: Fetch from git.
[arguments]: Delete reset-gzip-timestamps phase.
[inputs]: Add python-plotly.
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* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.15.1.
[source]: Fetch from git.
[arguments]: Delete tests requiring internet access; use "invoke".
[inputs]: Add curl.
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* gnu/packages/graph.scm (python-plotly)[propagated-inputs]: Add
python-pandas.
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* gnu/packages/bioinformatics.scm (bcftools): Update to 1.9.
[arguments]: Remove obsolete make flags.
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* gnu/packages/bioinformatics.scm (samtools): Update to 1.9.
[origin]: Remove bundled htslib sources.
[arguments]: Remove obsolete make-flags.
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* gnu/packages/bioinformatics.scm (htslib): Update to 1.9.
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Includes fixes for CVE-2018-12386 and CVE-2018-12387.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr60 repository.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.12.
(%linux-libre-hash): Update hash.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.74.
(%linux-libre-4.14-hash): Update hash.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.131.
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* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add metis,
mumps-openmpi, scalapack and pt-scotch.
[arguments]: Add "--with-PACKAGENAME=1" flags. Move 'mpi-setup' phase
ahead of 'configure' phase.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/web.scm (hiawatha)[arguments]: Set sane default
directories. Replace the 'remove-empty-dirs' phase with a
'install-no-empty-directories' one.
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* gnu/packages/mpi.scm (hwloc): Update to 2.0.2.
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* gnu/packages/dns.scm (nsd): New public variable.
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* gnu/packages/guile.scm (guile-next): Update to commit
6f3357b0df64c4be17e72079864c09a542f1c779.
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* gnu/packages/guile.scm (guile-next): Add native search paths for version 3.0.
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* gnu/packages/web.sck (hiawatha)[arguments]: USE_SYSTEM_NGHTTP2
to ENABLE_HTTP2.
[inputs]: Add nghttp2:lib.
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* gnu/packages/web.scm (hiawatha): Update to 10.8.3.
[source]: Also delete bundled copy of nghttp2.
[inputs]: Use mbedtls-for-hiawatha instead of vanilla mbedtls-apache.
* gnu/packages/tls.scm (mbedtls-for-hiawatha): New public variable.
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* gnu/packages/tls.scm (mbedtls-apache): Update to 2.13.0.
[native-inputs]: Add python.
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* gnu/packages/geo.scm (geos): Update to 3.7.0.
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* gnu/packages/hexedit.scm (hexedit): Update to 1.4.2.
[source]: Use the author's more up-to-date git repository.
[native-inputs]: Add autoconf and automake.
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* gnu/packages/xml.scm (html-xml-utils): Update to 7.7.
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* gnu/packages/xml.scm (perl-xml-feed): Update to 0.54.
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* gnu/packages/package-management.scm (guix): Update to 1d0be47.
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* gnu/packages/cups.scm (escpr): Update to 1.6.30.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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[[PGP Signed Part:Good signature from BF286CB6593E5FFD Björn Höfling <bjoern.hoefling@bjoernhoefling.de> (trust undefined) created at 2018-10-03T22:28:20+0200 using DSA]]
* gnu/packages/image-processing.scm (opencv): Update to 3.4.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/cran.scm (r-acclma)[description]: Fix order of arguments
to @acronym. The wrong order was causing 'stexi->shtml' to fail (match
error).
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* gnu/packages/video.scm (mpv): Update to 0.29.1.
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* gnu/packages/emulators.scm (retroarch): Update to 1.7.5.
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* gnu/packages/emulators.scm (retroarch)[source]: Use GIT-FETCH and GIT-FILE-NAME.
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* gnu/packages/enlightenment.scm (ephoto)[description]: Fix typos.
Wrap at 80 columns.
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* gnu/packages/license.scm (perl-string-copyright): Update to 0.003006.
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* gnu/packages/package-management.scm (rpm): Update to 4.14.2.
[arguments]: Rename 'set-nspr-search-path' phase to
'set-nss-library-path' and remove CPATH work-around.
Remove obsolete 'fix-rpm-symlinks' phase.
[home-page]: Drop www.
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* gnu/packages/mail.scm (imapfilter): Update to 2.6.12.
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* gnu/packages/mail.scm (imapfilter)[source]: Use GIT-FETCH and GIT-FILE-NAME.
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* gnu/packages/nickle.scm (nickle): Update to 2.82.
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* gnu/packages/hardware.scm (ddcutil): Update to 0.9.2.
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* gnu/packages/disk (ndctl)[arguments]: Rename inaccurately named
'autogen' phase to 'patch-FHS-file-names'. Explicitly return #t.
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* gnu/packages/file-systems.scm (disorderfs): Update to 0.5.4.
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* gnu/packages/freedesktop.scm (packagekit): Update to 1.1.11.
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* gnu/packages/games.scm (freedroidrpg): New public variable.
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