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* gnu: Move dbm databases to new module.Ricardo Wurmus2019-01-16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/databases.scm (gdbm, bdb, bdb-5.3): Move from here... * gnu/packages/dbm.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/audio.scm, gnu/packages/avahi.scm, gnu/packages/backup.scm, gnu/packages/cobol.scm, gnu/packages/cyrus-sasl.scm, gnu/packages/databases.scm, gnu/packages/finance.scm, gnu/packages/game-development.scm, gnu/packages/gnome.scm, gnu/packages/guile.scm, gnu/packages/ibus.scm, gnu/packages/kerberos.scm, gnu/packages/linux.scm, gnu/packages/mail.scm, gnu/packages/man.scm, gnu/packages/nvi.scm, gnu/packages/openldap.scm, gnu/packages/package-management.scm, gnu/packages/php.scm, gnu/packages/pulseaudio.scm, gnu/packages/python.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm, gnu/packages/sawfish.scm: Update module references.
* gnu: Move sqlite to separate module.Ricardo Wurmus2019-01-16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/databases.scm (sqlite, sqlite-3.26.0, sqlite-with-fts5, sqlite-with-column-metadata): Move variables from here... * gnu/packages/sqlite.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/apl.scm, gnu/packages/bittorrent.scm, gnu/packages/calendar.scm, gnu/packages/code.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/dc.scm, gnu/packages/disk.scm, gnu/packages/ebook.scm, gnu/packages/education.scm, gnu/packages/emacs.scm, gnu/packages/emulators.scm, gnu/packages/file-systems.scm, gnu/packages/freedesktop.scm, gnu/packages/ftp.scm, gnu/packages/games.scm, gnu/packages/geo.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gps.scm, gnu/packages/guile.scm, gnu/packages/ibus.scm, gnu/packages/kerberos.scm, gnu/packages/kodi.scm, gnu/packages/lisp.scm, gnu/packages/mail.scm, gnu/packages/messaging.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/nfs.scm, gnu/packages/ocaml.scm, gnu/packages/package-management.scm, gnu/packages/pdf.scm, gnu/packages/photo.scm, gnu/packages/php.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm, gnu/packages/scheme.scm, gnu/packages/sync.scm, gnu/packages/syndication.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/web-browsers.scm, gnu/packages/webkit.scm: Adjust module references.
* gnu: Separate Python core packages from the rest.Ricardo Wurmus2019-01-15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm: Move hundreds of package definitions from here... * gnu/packages/python-xyz.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/ada.scm, gnu/packages/admin.scm, gnu/packages/android.scm, gnu/packages/audio.scm, gnu/packages/backup.scm, gnu/packages/benchmark.scm, gnu/packages/bioinformatics.scm, gnu/packages/bittorrent.scm, gnu/packages/calendar.scm, gnu/packages/check.scm, gnu/packages/chemistry.scm, gnu/packages/cluster.scm, gnu/packages/compression.scm, gnu/packages/connman.scm, gnu/packages/crypto.scm, gnu/packages/cups.scm, gnu/packages/databases.scm, gnu/packages/dav.scm, gnu/packages/direct-connect.scm, gnu/packages/disk.scm, gnu/packages/django.scm, gnu/packages/dlang.scm, gnu/packages/docker.scm, gnu/packages/ebook.scm, gnu/packages/elf.scm, gnu/packages/emacs.scm, gnu/packages/emulators.scm, gnu/packages/engineering.scm, gnu/packages/enlightenment.scm, gnu/packages/finance.scm, gnu/packages/fltk.scm, gnu/packages/fontutils.scm, gnu/packages/freedesktop.scm, gnu/packages/game-development.scm, gnu/packages/games.scm, gnu/packages/geo.scm, gnu/packages/gl.scm, gnu/packages/glib.scm, gnu/packages/gnome.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/graph.scm, gnu/packages/graphics.scm, gnu/packages/graphviz.scm, gnu/packages/gtk.scm, gnu/packages/ham-radio.scm, gnu/packages/image-processing.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/jrnl.scm, gnu/packages/julia.scm, gnu/packages/kde-frameworks.scm, gnu/packages/key-mon.scm, gnu/packages/libffi.scm, gnu/packages/libreoffice.scm, gnu/packages/libusb.scm, gnu/packages/lirc.scm, gnu/packages/logging.scm, gnu/packages/machine-learning.scm, gnu/packages/mail.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/medical.scm, gnu/packages/messaging.scm, gnu/packages/monitoring.scm, gnu/packages/mp3.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/nutrition.scm, gnu/packages/openldap.scm, gnu/packages/openstack.scm, gnu/packages/package-management.scm, gnu/packages/password-utils.scm, gnu/packages/patchutils.scm, gnu/packages/pdf.scm, gnu/packages/photo.scm, gnu/packages/polkit.scm, gnu/packages/protobuf.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/qt.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm, gnu/packages/search.scm, gnu/packages/selinux.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/simulation.scm, gnu/packages/ssh.scm, gnu/packages/statistics.scm, gnu/packages/storage.scm, gnu/packages/sync.scm, gnu/packages/terminals.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/tryton.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/virtualization.scm, gnu/packages/vpn.scm, gnu/packages/web-browsers.scm, gnu/packages/web.scm, gnu/packages/wicd.scm, gnu/packages/xdisorg.scm, gnu/packages/xorg.scm: Update module references.
* gnu: python-numpy-documentation: Add missing packages to texlive-union.Ricardo Wurmus2019-01-15
| | | | | * gnu/packages/python.scm (python-numpy-documentation)[native-inputs]: Add texlive-fonts-cm-super and texlive-latex-needspace to texlive-union.
* gnu: Add python-miniboa.Christopher Baines2019-01-13
| | | | | | python2-miniboa is required for the linkchecker testsuite. * gnu/packages/python.scm (python-miniboa, python2-miniboa): New variable.
* gnu: python-pillow: Update to 5.4.1.Christopher Baines2019-01-13
| | | | | | | | I'm looking at this, as this release fixes an issue with the Django testsuite: https://github.com/python-pillow/Pillow/pull/3525 * gnu/packages/python.scm (python-pillow): Update to 5.4.1.
* gnu: Add python-doctest-ignore-unicode.Ricardo Wurmus2019-01-13
| | | | * gnu/packages/python.scm (python-doctest-ignore-unicode): New variable.
* gnu: python-pillow: Update homepage.Kei Kebreau2019-01-12
| | | | * gnu/packages/python.scm (python-pillow)[homepage]: Update URL.
* gnu: python-pillow: Update to 5.4.0Kei Kebreau2019-01-12
| | | | | * gnu/packages/python.scm (python-pillow): Update to 5.4.0. [arguments]: Add 'patch-ldconfig' phase.
* gnu: python-pygit2: Update to 0.27.3.Efraim Flashner2019-01-09
| | | | | | | * gnu/packages/python.scm (python-pygit2): Update to 0.27.3. [arguments]: Add custom phase to compile with cffi support. Add custom phase to not require specific versions of python-cffi. [native-inputs]: Add python-pytest.
* gnu: python-rpy2: Move to (gnu packages statistics).Ricardo Wurmus2019-01-07
| | | | | * gnu/packages/python.scm (python-rpy2): Move from here... * gnu/packages/statistics.scm (python-rpy2): ...to here.
* gnu: python2-fastlmm: Move to machine-learning.scm.Ludovic Courtès2019-01-07
| | | | | | | | This is a step towards removing OCaml modules from the closure of (gnu packages python). * gnu/packages/python.scm (python2-fastlmm): Move to... * gnu/packages/machine-learning.scm (python2-fastlmm): ... here.
* gnu: python-pyicu: Update to 2.2.Efraim Flashner2019-01-06
| | | | * gnu/packages/python.scm (python-pyicu): Update to 2.2.
* gnu: python-pysocks: Update to 1.6.8.Efraim Flashner2019-01-06
| | | | * gnu/packages/python.scm (python-pysocks): Update to 1.6.8.
* gnu: python-packaging: Update to 18.0.Efraim Flashner2019-01-06
| | | | * gnu/packages/python.scm (python-packaging): Update to 18.0.
* gnu: python-astroid: Update to 2.1.0.Efraim Flashner2019-01-06
| | | | * gnu/packages/python.scm (python-astroid): Update to 2.1.0.
* gnu: python-imagesize: Update to 1.1.0.Efraim Flashner2019-01-06
| | | | * gnu/packages/python.scm (python-imagesize): Update to 1.1.0.
* gnu: python-sphinx-alabaster-theme: Update to 0.7.12.Efraim Flashner2019-01-06
| | | | * gnu/packages/python.scm (python-sphinx-alabaster-theme): Update to 0.7.12.
* gnu: jupyter: Add missing dependency.Ricardo Wurmus2019-01-02
| | | | | | * gnu/packages/python.scm (jupyter)[propagated-inputs]: Add python-qtconsole. [home-page]: Use https URL. [arguments]: Update comment on why tests are disabled.
* gnu: Add python-qtconsole.Ricardo Wurmus2019-01-02
| | | | * gnu/packages/python.scm (python-qtconsole): New variable.
* gnu: python-notebook: Update to 5.7.4.Ricardo Wurmus2019-01-02
| | | | | | | * gnu/packages/python.scm (python-notebook): Update to 5.7.4. [arguments]: Use INVOKE for tests. [propagated-inputs]: Remove python-ipython; add python-prometheus-client, python-send2trash, and python-terminado.
* gnu: python-jupyter-console: Fix inputs.Ricardo Wurmus2019-01-02
| | | | | | * gnu/packages/python.scm (python-jupyter-console)[propagated-inputs]: Remove python-ipython; replace python-prompt-toolkit with python-prompt-toolkit-1. [native-inputs]: Add python-nose.
* gnu: python-ipython: Remove dependency on python-jupyter-core-minimal.Ricardo Wurmus2019-01-02
| | | | | * gnu/packages/python.scm (python-ipython)[propagated-inputs]: Remove python-jupyter-core-minimal.
* gnu: python-ipywidgets: Enable tests.Ricardo Wurmus2019-01-02
| | | | | | * gnu/packages/python.scm (python-ipywidgets)[arguments]: Remove. [native-inputs]: Add python-nose and python-pytest. [propagated-inputs]: Remove python-ipykernel.
* gnu: python-widgetsnbextension: Update to 3.4.2.Ricardo Wurmus2019-01-02
| | | | | * gnu/packages/python.scm (python-widgetsnbextension): Update to 3.4.2. [propagated-inputs]: Add python-ipykernel.
* gnu: Add python-send2trash.Ricardo Wurmus2019-01-02
| | | | | * gnu/packages/python.scm (python-send2trash, python2-send2trash): New variables.
* gnu: Add python-prometheus-client.Ricardo Wurmus2019-01-02
| | | | | * gnu/packages/python.scm (python-prometheus-client, python2-prometheus-client): New variables.
* gnu: python-jupyter-client: Update to 5.2.4.Ricardo Wurmus2019-01-02
| | | | * gnu/packages/python.scm (python-jupyter-client): Update to 5.2.4.
* gnu: python-ipython: Break dependency on python-ipykernel.Ricardo Wurmus2019-01-02
| | | | | | * gnu/packages/python.scm (python-ipython)[propagated-inputs]: Remove python-ipykernel. [arguments]: Delete more broken tests.
* gnu: python-ipykernel: Update to 5.1.0.Ricardo Wurmus2019-01-02
| | | | | | | * gnu/packages/python.scm (python-ipykernel): Update to 5.1.0. [arguments]: Enable tests. [propagated-inputs]: Add python-ipython. [native-inputs]: Add python-pytest and python-nose.
* gnu: python-ipython: Update to 5.8.0.Ricardo Wurmus2019-01-02
| | | | | | | | * gnu/packages/python.scm (python-ipython): Update to 5.8.0. [propagated-inputs]: Replace python-prompt-toolkit with python-prompt-toolkit-1. [arguments]: Use INVOKE in the "check" phase; return #T from the "fix-tests" phase.
* gnu: Add python-prompt-toolkit-1.Ricardo Wurmus2019-01-02
| | | | | * gnu/packages/python.scm (python-prompt-toolkit-1, python2-prompt-toolkit-1): New variables.
* gnu: python-prompt-toolkit: Update to 2.0.7.Ricardo Wurmus2019-01-02
| | | | | | | * gnu/packages/python.scm (python-prompt-toolkit): Update to 2.0.7. [arguments]: Enable tests; add phase "post-install-check" and delete "check" phase. [native-inputs]: Add python-pytest.
* gnu: python-hy: Use INVOKE.Ricardo Wurmus2019-01-02
| | | | * gnu/packages/python.scm (python-hy)[arguments]: Use INVOKE.
* gnu: python-clint: Use INVOKE.Ricardo Wurmus2019-01-02
| | | | * gnu/packages/python.scm (python-clint)[arguments]: Use INVOKE.
* gnu: python-configargparse: Use INVOKE.Ricardo Wurmus2019-01-02
| | | | * gnu/packages/python.scm (python-configargparse)[arguments]: Use INVOKE.
* gnu: python-docopt: Use INVOKE.Ricardo Wurmus2019-01-02
| | | | * gnu/packages/python.scm (python-docopt)[arguments]: Use INVOKE.
* gnu: python-lxml: Update to 4.2.5 [fixes CVE-2018-19787].Leo Famulari2018-12-31
| | | | * gnu/packages/python.scm (python-lxml, python2-lxml): Update to 4.2.5.
* gnu: python-apache-libcloud: Update to 2.4.0.Efraim Flashner2018-12-26
| | | | * gnu/packages/python.scm (python-apache-libcloud): Update to 2.4.0.
* gnu: python-pyelftools: Fix tests with python 3.7.Vagrant Cascadian2018-12-16
| | | | | | | | * gnu/packages/python.scm (python-pyelftools) [native-inputs]: Remove python-setuptools. [arguments]: Add set-pythonpath phase. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: python-celery: Update to 4.2.1.Christopher Baines2018-12-12
| | | | | | | | | | | | | This is an attempt to get the package building after the update to Python 3.7. I'm not sure this totally works, as the tests detect an incompatibility with Python 3.7 due to use of "async". But with the tests disabled, you can at least import the celery module, which is a start. * gnu/packages/python.scm (python-celery): Update to 4.2.1. [arguments]: Switch to py.test, from nose, disable the tests and loosen the requirements on pytest. [native-inputs]: Remove python-nose, add python-pytest and python-case. [home-page]: Change from HTTP to HTTPS.
* gnu: python-billiard: Update to 3.5.0.5.Christopher Baines2018-12-12
| | | | | | | This is to enable updating python-celery. * gnu/packages/python.scm (python-billiard): Update to 3.5.0.5. [native-inputs]: Remove python-nose, add python-case and python-pytest.
* gnu: python-kombu: Update to 4.2.2.Christopher Baines2018-12-12
| | | | | | This fixes the build, that probably broke with a Python update. * gnu/packages/python.scm (python-kombu): Update to 4.2.2..
* gnu: python-amqp: Update to 2.3.2.Christopher Baines2018-12-12
| | | | | | This is needed to update python-kombu to 4.2.2. * gnu/packages/python.scm (python-amqp): Update to 2.3.2.
* gnu: Add python-pyro4.Christopher Baines2018-12-12
| | | | | | This is needed to update python-kombu to 4.2.2 * gnu/packages/python.scm (python-pyro4): New variable.
* gnu: Add python-vine.Christopher Baines2018-12-12
| | | | | | This is needed to update python-amqp to 2.3.2. * gnu/packages/python.scm (python-vine): New variable.
* gnu: Add python-case.Christopher Baines2018-12-12
| | | | | | | This is required to update python-amqp and python-kombu, as well as adding python-vine. * gnu/packages/python.scm (python-case): New variable.
* gnu: Add python-serpent.Christopher Baines2018-12-12
| | | | | | | This is required for python-pyro4, which is needed to update python-amqp and python-kombu. * gnu/packages/python.scm (python-serpent): New variable.
* gnu: python-gevent: Remove unreliable test.Rutger Helling2018-12-11
| | | | | | | * gnu/packages/python.scm (python-gevent): Add 'skip-timer-test phase from python2-gevent. * gnu/packages/python.scm (python2-gevent): Remove 'skip-timer-test phase, inherit from python-gevent instead.
* gnu: python-jedi: Update to 0.13.1 and disable the tests.Maxim Cournoyer2018-12-09
| | | | | | | | Jedi test suite fails when run with Python 3.7. * gnu/packages/python.scm (python-jedi): Update to 0.13.1 [tests?] Disable. [phases] Add condition check for the tests? argument to run the tests.
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