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* gnu: bcftools: Fix building on aarch64.Efraim Flashner2017-08-15
| | | | | | * gnu/packages/patches/bcftools-regidx-unsigned-char.patch: New file. * gnu/packages/bioinformatics.scm (bcftools)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: e2fsprogs: Update to 1.43.5.Marius Bakke2017-08-15
| | | | | | | * gnu/packages/patches/e2fsprogs-32bit-quota-warnings.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/linux.scm (e2fsprogs): Update to 1.43.5. [source]: Use patch.
* gnu: cvs: Fix CVE-2017-12836.Leo Famulari2017-08-14
| | | | | | * gnu/packages/patches/cvs-2017-12836.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/version-control.scm (cvs)[source]: Use it.
* gnu: qemu: Fix CVE-2017-{10664,10806,10911,11434}.Alex Vong2017-08-13
| | | | | | | | | | | * gnu/packages/patches/qemu-CVE-2017-10664.patch, gnu/packages/patches/qemu-CVE-2017-10806.patch, gnu/packages/patches/qemu-CVE-2017-10911.patch, gnu/packages/patches/qemu-CVE-2017-11434.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/virtualization.scm (qemu)[source]: Use them. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: curl: Fix i686 test failure.Marius Bakke2017-08-13
| | | | | | * gnu/packages/patches/curl-bounds-check.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/curl.scm (curl-7.55.0)[source]: Use it.
* gnu: catdoc: Fix CVE-2017-11110.Alex Vong2017-08-12
| | | | | | | | * gnu/packages/patches/catdoc-CVE-2017-11110.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/textutils.scm (catdoc)[source]: Use it. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: openjpeg: Update to 2.2.0 [security fixes].Marius Bakke2017-08-10
| | | | | | | | | | | | | | | | | In addition to the patches we already had (which are not mentioned in the ChangeLog, but verified by following their respective GitHub issues) this release also fixes CVE-2016-9112, CVE-2016-5139, CVE-2016-5152, CVE-2016-5158, CVE-2016-5159, CVE-2016-1626 and CVE-2016-1628. See <https://github.com/uclouvain/openjpeg/blob/v2.2.0/CHANGELOG.md> for details. * gnu/packages/patches/openjpeg-CVE-2016-9572-CVE-2016-9573.patch, gnu/packages/patches/openjpeg-CVE-2016-9850-CVE-2016-9851.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/image.scm (openjpeg): Update to 2.2.0. [source](patches): Remove. * gnu/packages/gstreamer.scm (gst-plugins-bad)[arguments]: Add phase to patch hard-coded openjpeg-2.1 path.
* gnu: ruby-puma: Update to 3.9.1.Ben Woodcroft2017-08-08
| | | | | | | | | * gnu/packages/ruby.scm (ruby-puma): Update to 3.9.1. [source]: Remove patch. [arguments]: Disable tests. [native-inputs]: Remove field. * gnu/packages/patches/ruby-puma-ignore-broken-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: ntfs-3g: Update to 2017.3.23.Tobias Geerinckx-Rice2017-08-07
| | | | | | | * gnu/packages/linux.scm (ntfs-3g): Update to 2017.3.23. [source]: Remove patch. * gnu/packages/patches/ntfs-3g-CVE-2017-0358.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: libtasn1: Fix CVE-2017-10790.Leo Famulari2017-08-05
| | | | | | * gnu/packages/patches/libtasn1-CVE-2017-10790.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/tls.scm (libtasn1/fixed)[source]: Use it.
* gnu: php: Update to 7.1.8.Julien Lepiller2017-08-04
| | | | | | * gnu/packages/patches/gd-CVE-2017-7890.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it * gnu/packages/php.scm (php): Update to 7.1.8.
* gnu: fabric: Update to 1.13.2.Tobias Geerinckx-Rice2017-08-04
| | | | | | | * gnu/packages/admin.scm (fabric): Update to 1.13.2. Remove outdated comments. [source]: Remove ‘patches’. * gnu/packages/patches/fabric-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: glibc@2.22: Fix security issues.Efraim Flashner2017-08-02
| | | | | | | | Fixes CVE-2015-{5180,7547}, CVE-2016-{3075,3706,4429}. * gnu/packages/base.scm (glibc@2.22)[source]: Add patches. * gnu/packages/patches/glibc-CVE-2015-7547.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: glibc@2.23: Fix CVE-2015-5180, CVE-2016-{3075,3706,4429}.Efraim Flashner2017-08-02
| | | | | | | | * gnu/packages/base.scm (glibc@2.23)[source]: Add patches. * gnu/packages/patches/glibc-CVE-2016-3075.patch, gnu/packages/patches/glibc-CVE-2016-3706.patch, gnu/packages/patches/glibc-CVE-2016-4429.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
* gnu: glibc@2.24: Fix CVE-2015-5180.Efraim Flashner2017-08-02
| | | | | | * gnu/packages/base.scm (glibc@2.24)[source]: Add patch. * gnu/packages/patches/glibc-CVE-2015-5180.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: guile-ssh: Update to 0.11.2.Ludovic Courtès2017-08-01
| | | | | | | | | * gnu/packages/ssh.scm (guile-ssh): Update to 0.11.2. [source]: Remove 'patches', 'modules', and 'snippet'. * gnu/packages/patches/guile-ssh-channel-finalization.patch, gnu/packages/patches/guile-ssh-double-free.patch, gnu/packages/patches/guile-ssh-rexec-bug.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove them.
* gnu: python-pbr-minimal: Update to 3.0.1Muriithi Frederick Muriuki2017-08-01
| | | | | | | | | * gnu/packages/python.scm (python-pbr-minimal): Update to 3.0.1 [source]: Update hash and remove patch. * gnu/packages/patches/python-pbr-fix-man-page-support.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: libgit2: Update to 0.26.0.Ludovic Courtès2017-07-31
| | | | | | | * gnu/packages/version-control.scm (libgit2): Update to 0.26.0. Remove "libgit2-use-after-free.patch". * gnu/packages/patches/libgit2-use-after-free.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: erlang: Fix man-pages search path of 'erl -man'.Peter Mikkelsen2017-07-29
| | | | | | | | * gnu/packages/patches/erlang-man-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/erlang.scm (erlang)[source]: Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: nss, nss-certs: Update to 3.32.Marius Bakke2017-07-28
| | | | | | | | | | This release includes minor code changes and many certificate updates: <https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS/NSS_3.32_release_notes> * gnu/packages/certs.scm (nss-certs): Update to 3.32. * gnu/packages/gnuzilla.scm (nss): Update to 3.32. [arguments]: Prevent another test file from being installed. * gnu/packages/patches/nss-pkgconfig.patch: Adjust.
* gnu: evince: Update to 3.24.1.Kei Kebreau2017-07-25
| | | | | | | * gnu/packages/gnome.scm (evince): Update to 3.24.1. [source]: Remove obsolete patch. * gnu/packages/patches/evince-CVE-2017-1000083.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: perl-dbd-mysql: Fix CVE-2017-10788.Kei Kebreau2017-07-25
| | | | | | * gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/databases.scm (perl-dbd-mysql)[source]: Use it.
* gnu: Add guile2.0-bytestructures.Ludovic Courtès2017-07-25
| | | | | | | | | * gnu/packages/patches/guile-bytestructures-name-clash.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/guile.scm (guile-bytestructures)[source]: Use it. [arguments]: Unpack the source. [native-inputs]: New field. (guile2.0-bytestructures): New variable.
* gnu: gnome: Add deja-dup.Christopher Baines2017-07-24
| | | | | | * gnu/packages/gnome.scm (deja-dup): New variable. * gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch file entry.
* gnu: metabat: Update to 2.11.1.Ben Woodcroft2017-07-23
| | | | | | | | * gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1. [source]: Add patch to fix compilation. [arguments]: Adjust regular expressions modifying 'SConstruct'. * gnu/packages/patches/metabat-fix-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: bcftools: Update to 1.5.Ben Woodcroft2017-07-23
| | | | | | | | | * gnu/packages/bioinformatics.scm (bcftools): Update to 1.5. [origin]: Remove fix-makefile patch. [arguments]: Add configure flags, add LIBS make flag. Do not delete configure phase. * gnu/packages/patches/bcftools-fix-makefile.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: bcftools: Update to 1.4.1.Ben Woodcroft2017-07-23
| | | | | | | | * gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1. [arguments]: Move Makefile modifications from here ... [source]: ... to added patch. Adjust patch for update to 1.4. * gnu/packages/patches/bcftools-fix-makefile.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: quassel: Enable TLS.Ryan Moe2017-07-22
| | | | | | | | * gnu/packages/patches/quassel-fix-tls-check.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/irc.scm (quassel)[source]: Use it. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Remove python-fake-factory leftovers.Marius Bakke2017-07-22
| | | | | | | This is a followup to c799eb2eb8b1a820147af96988eddaa9f752994b. * gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: python-pyopenssl: Update to 17.2.0.Marius Bakke2017-07-22
| | | | | | | | * gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.2.0. [native-inputs]: Add PYTHON-FLAKY. [source](patches): Remove.
* gnu: heimdal: Fix CVE-2017-{6594,11103}.Alex Vong2017-07-20
| | | | | | | * gnu/packages/patches/heimdal-CVE-2017-6594.patch, gnu/packages/patches/heimdal-CVE-2017-11103.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/kerberos.scm (heimdal)[source]: Use them.
* gnu: Remove a left-over patch.Leo Famulari2017-07-20
| | | | | | | This is a followup to commit 426b0b898f70a58133d80779980f163a5761686e. * gnu/packages/patches/pcre-CVE-2017-7186.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Add libusb@0.1.Jonathan Brielmaier2017-07-20
| | | | | | | | * gnu/packages/libusb.scm (libusb-0.1): New variable. * gnu/packages/patches/libusb-0.1-disable-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: qemu: Fix CVE-2017-11334.Leo Famulari2017-07-17
| | | | | | * gnu/packages/patches/qemu-CVE-2017-11334.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/virtualization.scm (qemu)[source]: Use it.
* gnu: chicken: Fix CVE-2017-11343.Leo Famulari2017-07-17
| | | | | | * gnu/packages/patches/chicken-CVE-2017-11343.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/scheme.scm (chicken)[source]: Use it.
* gnu: supertuxkart: Fix build on aarch64.Efraim Flashner2017-07-17
| | | | | | * gnu/packages/games.scm (supertuxkart)[source]: Add patch. * gnu/packages/patches/supertuxkart-angelscript-ftbfs.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: Add sooperlooper.Ricardo Wurmus2017-07-17
| | | | | | * gnu/packages/patches/sooperlooper-build-with-wx-30.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/music.scm (sooperlooper): New variable.
* gnu: evince: Fix CVE-2017-1000083.Marius Bakke2017-07-13
| | | | | | * gnu/packages/patches/evince-CVE-2017-1000083.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (evince)[source]: Use it.
* gnu: spice: Fix CVE-2017-7506.Leo Famulari2017-07-12
| | | | | | * gnu/packages/patches/spice-CVE-2017-7506.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/spice.scm (spice)[source]: Use it.
* gnu: hop: Update to 3.1.0-pre2.Kei Kebreau2017-07-10
| | | | | | | | | | * gnu/packages/scheme.scm (hop): Update to 3.1.0-pre2. [source]: Remove unnecessary patch. [arguments]: Enable tests; disable parallel building; specify BIGLOO in make-flags. [inputs]: Add libgc, libunistring, libuv, pcre and sqlite. * gnu/local.mk (dist_patch_DATA): Remove unnecessary patch. * gnu/packages/patches/hop-linker-flags.patch: Delete file.
* gnu: bigloo: Update to 4.3a.Kei Kebreau2017-07-10
| | | | | | | * gnu/packages/scheme.scm (bigloo): Update to 4.3a. [source]: Remove old patch. Add snippet. [arguments]: Adjust the build phases accordingly. [inputs]: Add libgc, libunistring, libuv, openssl, pcre and sqlite.
* gnu: libtiff: Fix two integer overflows.Leo Famulari2017-07-10
| | | | | | | | * gnu/packages/patches/libtiff-tiffycbcrtorgb-integer-overflow.patch, gnu/packages/patches/libtiff-tiffycbcrtorgbinit-integer-overflow.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/image.scm (libtiff-4.0.8)[source]: Use them.
* gnu: ncurses: Fix CVE-2017-10684 and CVE-2017-10685.Leo Famulari2017-07-10
| | | | | | | * gnu/packages/patches/ncurses-CVE-2017-10684-10685.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ncurses.scm (ncurses)[replacement]: New field. (ncurses/fixed): New variable.
* gnu: poppler: Fix null pointer dereferences.Mark H Weaver2017-07-10
| | | | | | | * gnu/packages/patches/poppler-fix-crash-with-broken-documents.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (poppler/fixed)[source]: Add the patch.
* gnu: dblatex: Use texlive-union.Ricardo Wurmus2017-07-09
| | | | | | | * gnu/packages/patches/dblatex-remove-multirow.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/docbook.scm (dblatex)[source]: Use patch. [inputs]: Replace "texlive" with a texlive-union.
* gnu: poppler: Use an ABI-compatible replacement to fix CVE-2017-9776.Leo Famulari2017-07-09
| | | | | | | | | | | | | | | | This is a followup to commit 95bbaa02aa63bc5eae36f686f1ed9915663aa4cf. See <https://bugs.gnu.org/27621> for more information. Poppler 0.56.0's ABI is not compatible with Poppler 0.52.0, so it's not possible to graft the newer version in place of the older one. This change leaves CVE-2017-9775 unfixed for now. * gnu/packages/patches/poppler-CVE-2017-9776.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (poppler-0.56.0): Replace with ... (poppler/fixed): ... new variable. (poppler)[replacement]: Replaced with poppler/fixed.
* gnu: blast+: Update to 2.6.0.Ben Woodcroft2017-07-08
| | | | | | | | | * gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0. [origin]: Remove bundled pcre. Add patch. [arguments]: Replace paths in run_with_lock.c. Configure with pcre. [inputs]: Add pcre, perl, python. * gnu/packages/patches/blast+-fix-makefile.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: python-pyopenssl: Fix test failure on 32-bit platforms.Marius Bakke2017-07-07
| | | | | | * gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-pyopenssl)[source]: Use it.
* gnu: libtiff: Fix CVE-2017-{9936,10688}.Alex Vong2017-07-07
| | | | | | | | | * gnu/packages/patches/libtiff-CVE-2017-9936.patch, gnu/packages/patches/libtiff-CVE-2017-10688.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/image.scm (libtiff-4.0.8)[source]: Use them. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: xorg-server: Fix CVE-2017-{10971,10972}.Kei Kebreau2017-07-06
| | | | | | | | | * gnu/packages/patches/xorg-server-CVE-2017-10971.patch, gnu/packages/patches/xorg-server-CVE-2017-10972.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/xorg.scm (xorg-server)[source]: Use them. Signed-off-by: Leo Famulari <leo@famulari.name>
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