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* gnu: icecat: Add fixes for CVE-2015-{4473,4482,4488,4489,4491,4492}.Mark H Weaver2015-08-12
| | | | | | | | | | | | | | | | | WARNING: CVE-2015-4473 may not be fully addressed here, because I was unable to backport some of the patches (for upstream bugs 1182711 and 1146213). I was also unable to backport CVE-2015-4484 (upstream bug 1171540) and CVE-2015-4487 (upstream bug 1171603). I was unable to find any commit in the upstream repository that claims to address bug 1105914 (CVE-2015-4478). * gnu/packages/patches/icecat-CVE-2015-4473-partial.patch, gnu/packages/patches/icecat-CVE-2015-4482.patch, gnu/packages/patches/icecat-CVE-2015-4488.patch, gnu/packages/patches/icecat-CVE-2015-4489.patch, gnu/packages/patches/icecat-CVE-2015-4491.patch, gnu/packages/patches/icecat-CVE-2015-4492.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
* gnu: ratpoison: Update to 1.4.8.Mathieu Lirzin2015-08-12
| | | | | * gnu/packages/ratpoison.scm (ratpoison): Update to 1.4.8. * gnu/packages/patches/ratpoison-shell.patch: Adapt to it.
* gnu: wicd: Fix bugs in curses interface program.Mark H Weaver2015-08-12
| | | | | | | * gnu/packages/patches/wicd-bitrate-none-fix.patch, gnu/packages/patches/wicd-get-selected-profile-fix.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/wicd.scm (wicd)[source]: Add patches.
* gnu: icecat: Add fix for CVE-2015-4495.Mark H Weaver2015-08-07
| | | | | | | * gnu/packages/patches/icecat-CVE-2015-4495.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patch. Move the 'patches' field above the snippet.
* gnu: python-2: Update to 2.7.10.Eric Dvorsak2015-08-06
| | | | | | | | * gnu/packages/patches/python2-sqlite-3.8.4-test-fix.patch, gnu/packages/patches/python-libffi-mips-n32-fix.patch: Remove files. * gnu-system.am (dist_patch_DATA): Remove them. * gnu/packages/python.scm (python-2): Update to 2.7.10. Remove patches. Update comment showing test failures.
* gnu: Add pidgin.Mark H Weaver2015-08-04
| | | | | | * gnu/packages/patches/pidgin-add-search-path.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/messaging.scm (pidgin): New variable.
* gnu: icu4c: Add fix for CVE-2015-4760.Mark H Weaver2015-08-03
| | | | | | * gnu/packages/patches/icu4c-CVE-2015-4760.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/icu4c.scm (icu4c)[source]: Add patch.
* gnu: Add fasthenry.Federico Beffa2015-08-01
| | | | | | | | | | * gnu/packages/engineering.scm (fasthenry): New variable. * gnu/packages/patches/fasthenry-spAllocate.patch, gnu/packages/patches/fasthenry-spBuild.patch, gnu/packages/patches/fasthenry-spFactor.patch, gnu/packages/patches/fasthenry-spSolve.patch, gnu/packages/patches/fasthenry-spUtils.patch: New files. * gnu-system.am (dist_patch_DATA): Add them.
* gnu: Add fastcap.Federico Beffa2015-08-01
| | | | | | | | | * gnu/packages/engineering.scm (fastcap): New variable. (broken-tarball-fetch): New function. Suggested by Ludovic Courtès <ludo@gnu.org>. * gnu/packages/patches/fastcap-mulGlobal.patch, gnu/packages/patches/fastcap-mulSetup.patch: New files. * gnu-system.am (dist_patch_DATA): Add them.
* gnu: expat: Add fix for CVE-2015-1283.Mark H Weaver2015-07-30
| | | | | | * gnu/packages/patches/expat-CVE-2015-1283.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/xml.scm (expat)[source]: Add patch.
* gnu: qemu: Add fixes for CVE-2015-5154 and CVE-2015-5158.Mark H Weaver2015-07-27
| | | | | | | | | * gnu/packages/patches/qemu-CVE-2015-5154-pt1.patch, gnu/packages/patches/qemu-CVE-2015-5154-pt2.patch, gnu/packages/patches/qemu-CVE-2015-5154-pt3.patch, gnu/packages/patches/qemu-CVE-2015-5158.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/qemu.scm (qemu-headless)[source]: Add patches.
* gnu: liblxqt: Fix build with Qt 5.5.Andreas Enge2015-07-27
| | | | | | * gnu/packages/patches/liblxqt-include.patch: New file. * gnu-system.am (dist_patch_DATA): Register patch. * gnu/packages/lxqt.scm (liblxqt)[source]: Use patch.
* gnu: ghostscript: Add fix for CVE-2015-3228.Mark H Weaver2015-07-27
| | | | | | * gnu/packages/patches/ghostscript-CVE-2015-3228.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/ghostscript.scm (ghostscript)[source]: Add patch.
* gnu: qt: Update to 5.5.0.Andreas Enge2015-07-27
| | | | | | | | | | | | | * gnu/packages/qt.scm (qt): Update to 5.5.0. Update download location. Drop patch and snippet. [arguments]: Add configure flag to drop qtwebengine module bundling chromium. [native-inputs]: Drop ninja, needed only for qtwebengine. [inputs]: Add harfbuzz to avoid use of bundled copy. (qt-4)[inputs]: Remove inherited harfbuzz again. * gnu/packages/patches/qt5-conflicting-typedefs.patch: Delete file. * gnu-system.am (dist_patch_DATA): Unregister patch. * gnu/packages/patches/qt5-runpath.patch: Adapt patch.
* gnu: avidemux: Install libraries to lib.Andreas Enge2015-07-26
| | | | | | | | | * gnu/packages/video.scm (avidemux)[source]: Add patch to install to lib directory instead of lib64 or lib32 depending on the architecture. [arguments]: Use the lib instead of the lib64 directory for flags in the build phase, so that these flags should now also work on i686. * gnu/packages/patches/avidemux-install-to-lib.patch: New file. * gnu-system.am (dist_patch_DATA): Register it.
* gnu: bedtools: Add patch to fix compilation on 32 bit systems.Ben Woodcroft2015-07-25
| | | | | | | | * gnu/packages/patches/bedtools-32bit-compilation.patch: New file. * gnu/packages/bioinformatics.scm (bedtools)[source]: Add patch. * gnu-system.am (dist_patch_DATA): Register patch. Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu: ripperX: Update to 2.8.0.Andreas Enge2015-07-24
| | | | | | | | | * gnu/packages/mp3.scm (ripperx): Update to 2.8.0. Drop one patch and add another one. * gnu/packages/patches/ripperx-libm.patch: Remove file. * gnu/packages/patches/ripperx-missing-file.patch: New file. * gnu-system.am (dist_patch_DATA): Register one patch and unregister the other.
* gnu: clang: Disable distro detection and remove FHS assumptions.Ludovic Courtès2015-07-24
| | | | | | * gnu/packages/patches/clang-libc-search-path.patch: Disable distro detection and remove hard-coded FHS file names, both of which would lead to breakage on non-GuixSD systems.
* gnu: guile-static: Add 'umount' procedure.Ludovic Courtès2015-07-24
| | | | * gnu/packages/patches/guile-linux-syscalls.patch: Add 'umount' subr.
* gnu: teckit: Update to 2.5.4.Andreas Enge2015-07-22
| | | | | | | | | * gnu/packages/fontutils.scm (teckit): Update to 2.5.4. Drop patch. Use svn-fetch for download. [arguments]: Add phase to call autogen. [native-inputs]: New field. * gnu/packages/patches/teckit-cstdio.patch: Delete file. * gnu-system.am (dist_patch_DATA): Unregister patch.
* gnu: julia: Update to 0.3.10.Ricardo Wurmus2015-07-21
| | | | | | * gnu/packages/julia.scm (julia): Update to 0.3.10. * gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: libmad: Apply fixes for ARMv7 Thumb, etc.Mark H Weaver2015-07-21
| | | | | | | | * gnu/packages/patches/libmad-armv7-thumb-pt1.patch, gnu/packages/patches/libmad-armv7-thumb-pt2.patch, gnu/packages/patches/libmad-frame-length.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/mp3.scm (libmad)[source]: Add patches.
* gnu: tidy: Add fixes for CVE-2015-5522 and CVE-2015-5523.Mark H Weaver2015-07-20
| | | | | | * gnu/packages/patches/tidy-CVE-2015-5522+5523.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/web.scm (tidy)[source]: Add patch.
* Merge branch 'master' into core-updatesMark H Weaver2015-07-19
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| * gnu: crda: Add forgotten patch.Ludovic Courtès2015-07-18
| | | | | | | | | | | | | | This file should have been added as part of commit cc205da. * gnu/packages/patches/crda-optional-gcrypt.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
* | gnu: ninja: Do not report files with mtime = 0 as missing.Ludovic Courtès2015-07-18
| | | | | | | | | | | | | | | | | | | | This is a followup to 47f315a. * gnu/packages/patches/ninja-zero-mtime.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/ninja.scm (ninja)[source]: Reinstate 'patches' field and add this patch. [arguments]: Remove 'apply-ninja-tests.patch' phase.
* | gnu: icecat: Add patch to adapt to freetype 2.6.Mark H Weaver2015-07-17
| | | | | | | | | | | | * gnu/packages/patches/icecat-freetype-2.6.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
* | gnu: subversion: Skip the faulty test.Ludovic Courtès2015-07-16
| | | | | | | | | | | | | | | | The added patch from upstream didn't help, nor did downgrading to SQLite 3.8.9. Thus, shamelessly skip the offending test. * gnu/packages/patches/subversion-sqlite-3.8.9-fix.patch: Add one hunk to skip the faulty test, and another one from upstream.
* | gnu: unzip: Fix CVE-2014-9636 and some other bugs.Mark H Weaver2015-07-15
| | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/unzip-CVE-2014-9636.patch, gnu/packages/patches/unzip-allow-greater-hostver-values.patch, gnu/packages/patches/unzip-increase-size-of-cfactorstr.patch, gnu/packages/patches/unzip-initialize-symlink-flag.patch, gnu/packages/patches/unzip-remove-build-date.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/zip.scm (unzip)[source]: Add patches. [arguments]: Use 'modify-phases'. Remove custom 'configure' phase; pass additional make-flags instead. Add custom 'build' phase that builds "generic_gcc" target; remove "generic_gcc" from make-flags.
* | Merge branch 'master' into core-updatesMark H Weaver2015-07-15
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| * gnu: icecat: Update to 31.8.0-gnu1.Mark H Weaver2015-07-15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/icecat-enable-acceleration-and-webgl.patch: New file. * gnu/packages/patches/icecat-CVE-2015-2722-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2722-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2724-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2724-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2724-pt3.patch, gnu/packages/patches/icecat-CVE-2015-2724-pt4.patch, gnu/packages/patches/icecat-CVE-2015-2728-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2728-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2733-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2733-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2735.patch, gnu/packages/patches/icecat-CVE-2015-2736.patch, gnu/packages/patches/icecat-CVE-2015-2738.patch, gnu/packages/patches/icecat-CVE-2015-2739.patch, gnu/packages/patches/icecat-CVE-2015-2740.patch, gnu/packages/patches/icecat-CVE-2015-2743.patch: Remove files. * gnu-system.am (dist_patch_DATA): Remove them, and add the new file. * gnu/packages/gnuzilla.scm (icecat): Update to 31.8.0-gnu1. Remove the outdated patches and add the new one.
* | Merge branch 'master' into core-updatesMark H Weaver2015-07-15
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| * gnu: boost: Patch to avoid -m32 flag on mips.Andreas Enge2015-07-13
| | | | | | | | | | | | * gnu/packages/patches/boost-mips-avoid-m32.patch: New file. * gnu-system.am (dist_patch_DATA): Register patch. * gnu/packages/boost.scm (boost): Use it.
* | gnu: gettext: Update to 0.19.5.Mark H Weaver2015-07-10
| | | | | | | | | | | | * gnu/packages/patches/gettext-msgunfmt.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/gettext.scm (gnu-gettext): Update to 0.19.5. Remove patch.
* | gnu: coreutils: Update to 8.24.Mark H Weaver2015-07-10
|/ | | | | | * gnu/packages/patches/coreutils-dummy-man.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/base.scm (coreutils): Update to 8.24. Remove patch.
* gnu: wpa-supplicant: Fix WPS and P2P NFC NDEF record payload length validation.Mark H Weaver2015-07-08
| | | | | | * gnu/packages/patches/wpa-supplicant-2015-5-fix.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/admin.scm (wpa-supplicant-light)[source]: Add patch.
* gnu: Add preseq.Ricardo Wurmus2015-07-08
| | | | | | | * gnu/packages/bioinformatics.scm (preseq): New variable. * gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: New file. * gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: New file. * gnu-system.am (dist_patch_DATA): Add them.
* gnu: liba52: Build shared library.Mark H Weaver2015-07-07
| | | | | | | | | | | | * gnu/packages/patches/liba52-enable-pic.patch, gnu/packages/patches/liba52-link-with-libm.patch, gnu/packages/patches/liba52-set-soname.patch, gnu/packages/patches/liba52-use-mtune-not-mcpu.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/video.scm (liba52)[source]: Add patches. [native-inputs]: Add autoconf, automake, and libtool. [arguments]: Add "--enable-shared" to configure-flags. Add 'bootstrap' phase.
* gnu: icecat: Apply more libvpx-1.4 fixes.Mark H Weaver2015-07-07
| | | | | | | This is a followup to commit c803ffcb3a9d5669bf5bae62b66fa058d697545c. * gnu/packages/patches/icecat-libvpx-1.4.patch: Augment existing patch to include fixes for content/media/encoder/VP8TrackEncoder.cpp.
* gnu: icecat: Fix build against libvpx 1.4.Mark H Weaver2015-07-06
| | | | | | * gnu/packages/patches/icecat-libvpx-1.4.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
* gnu: libvpx: Update to 1.4.0.Mark H Weaver2015-07-06
| | | | | | | | | * gnu/packages/patches/libvpx-fix-armhf-link.patch, gnu/packages/patches/libvpx-fix-ssse3-quantize.patch, gnu/packages/patches/libvpx-vp9-out-of-bounds-access.patch: Remove files. * gnu-system.am (dist_patch_DATA): Remove them. * gnu/packages/video.scm (libvpx): Update to 1.4.0. Remove patches. Update source URI.
* gnu: libwmf: Fix CVE-2006-3376, CVE-2009-1364, CVE-2015-{0848,4588,4695,4696}.Mark H Weaver2015-07-06
| | | | | | | | * gnu/packages/patches/libwmf-CVE-2006-3376.patch, gnu/packages/patches/libwmf-CVE-2009-1364.patch, gnu/packages/patches/libwmf-CVE-2015-0848+4588+4695+4696.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/image.scm (libwmf)[source]: Add patches.
* gnu: icecat: Fix CVE-2015-{2722,2724,2728,2733,2735,2736,2738,2739,2740,2743}.Mark H Weaver2015-07-04
| | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/icecat-CVE-2015-2722-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2722-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2724-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2724-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2724-pt3.patch, gnu/packages/patches/icecat-CVE-2015-2724-pt4.patch, gnu/packages/patches/icecat-CVE-2015-2728-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2728-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2733-pt1.patch, gnu/packages/patches/icecat-CVE-2015-2733-pt2.patch, gnu/packages/patches/icecat-CVE-2015-2735.patch, gnu/packages/patches/icecat-CVE-2015-2736.patch, gnu/packages/patches/icecat-CVE-2015-2738.patch, gnu/packages/patches/icecat-CVE-2015-2739.patch, gnu/packages/patches/icecat-CVE-2015-2740.patch, gnu/packages/patches/icecat-CVE-2015-2743.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
* gnu: mutt: Don't retain reference to GCC.Ludovic Courtès2015-07-03
| | | | | | * gnu/packages/patches/mutt-store-references.patch: New file. * gnu/packages/mail.scm (mutt)[source]: Use it. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: Add deal.II.Eric Bavier2015-06-29
| | | | | | * gnu/packages/maths.scm (dealii, dealii-openmpi): New variables. * gnu/packages/patches/dealii-p4est-interface.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: petsc: Upgrade to 3.6.0.Eric Bavier2015-06-29
| | | | | | * gnu/packages/maths.scm (petsc): Upgrade to 3.6.0. * gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch. * gnu-system.am (dist_patch_DATA): Remove it.
* gnu: Add MUMPS.Eric Bavier2015-06-29
| | | | | | | * gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi) (mumps-metis-openmpi): New variables. * gnu/packages/patches/mumps-build-parallelism.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: Update scotch to 6.0.4.Eric Bavier2015-06-29
| | | | | | | | | * gnu/packages/maths.scm (scotch): Update to 6.0.4. [arguments]: Add -fPIC to CFLAGS. * gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a new set of test fixes. * gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: hwloc: Upgrade to 1.10.1.Eric Bavier2015-06-29
| | | | | | | | | * gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch. * gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1. [source]: Use patch. [propagated-inputs]: Remove libpci. [inputs]: Add libpciaccess. * gnu-system.am (dist_patch_DATA): Add patch.
* gnu: r: Update to 3.2.1.Ricardo Wurmus2015-06-29
| | | | | | * gnu/packages/statistics.scm (r): Update to 3.2.1. * gnu/packages/patches/r-fix-15899.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it.
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