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| * gnu: dune-*: set up MPI for tests•••* gnu/packages/maths.scm (dune-common, dune-grid, dune-istl, dune-alugrid): [arguments]: correctly set up MPI instead of disabling tests that require MPI. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber2020-03-12
* | Merge branch 'master' into core-updatesMarius Bakke2020-03-10
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| * gnu: speedcrunch: Use HTTPS home page.•••* gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2020-03-09
| * gnu: openblas: Use HTTPS home page.•••* gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2020-03-07
| * gnu: wxmaxima: Update to 20.02.4.•••* gnu/packages/maths.scm (wxmaxima): Update to 20.02.4. [arguments]: Enable tests and set #:test-target to "test". [native-inputs]: Add xorg-server-for-tests. Kei Kebreau2020-03-06
| * gnu: SuiteSparse: Update to 5.7.1.•••* gnu/packages/maths.scm (suitesparse): Update to 5.7.1. [source]: The latest releases of SuiteSparse have only been published on GitHub. Fetch from git tag as GitHub releases page only contains autogenerated tarballs that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to find SuiteSparse_config. [arguments]: Add CMake flags used by new components GraphBLAS and Mongoose. [native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose. * gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> Felix Gruber2020-03-04
* | gnu: OpenBLAS: Update to 0.3.9.•••* gnu/packages/maths.scm (openblas): Update to 0.3.9. Marius Bakke2020-03-05
* | Merge branch 'master' into core-updatesMarius Bakke2020-03-04
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| * gnu: z3: Build the Python bindings•••* gnu/packages/maths.scm (z3)[arguments]: Add the --python and --pypkgdir flags to configure. To facilitate the latter, add (guix build python-build-system) to #:modules and #:imported-modules. Jakub Kądziołka2020-02-23
| * gnu: Add vinci.•••* gnu/packages/maths.scm (vinci): New variable. Andreas Enge2020-02-21
* | gnu: OpenBLAS: Update to 0.3.8.•••* gnu/packages/maths.scm (openblas): Update to 0.3.8. Marius Bakke2020-02-15
* | Merge branch 'master' into core-updatesMarius Bakke2020-02-14
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| * gnu: octave, octave-cli: Update to 5.2.0.•••* gnu/packages/maths.scm (octave, octave-cli): Update to 5.2.0. [inputs]: Add bdb. Kei Kebreau2020-02-10
* | Merge branch 'staging' into core-updatesMarius Bakke2020-02-03
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| * gnu: superlu-dist: Update to 6.2.0.•••* gnu/packages/maths.scm (superlu-dist): Update to 6.2.0. [source]: Update upstream url. Remove mpi deprecations patch. * gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Eric Bavier2020-01-31
| * gnu: superlu: Update upstream url.•••* gnu/packages/maths.scm (superlu)[source,home-page]: Update url. Eric Bavier2020-01-31
* | Merge branch 'staging' into core-updatesMarius Bakke2020-01-23
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| * gnu: wxmaxima: Update to 20.01.3.•••* gnu/packages/maths.scm (wxmaxima): Update to 20.01.3. [home-page]: Update URL. Kei Kebreau2020-01-23
* | gnu: Replace uses of 'libjpeg' with 'libjpeg-turbo'.•••* gnu/packages/abiword.scm (abiword)[inputs]: Change from LIBJPEG to LIBJPEG-TURBO. * gnu/packages/admin.scm (testdisk)[inputs]: Likewise. * gnu/packages/algebra.scm (giac)[inputs]: Likewise. * gnu/packages/animation.scm (synfig)[inputs]: Likewise. * gnu/packages/astronomy.scm (gnuastro, celestia)[inputs]: Likewise. * gnu/packages/cdrom.scm (dvdstyler)[inputs]: Likewise. * gnu/packages/cran.scm (r-jpeg, r-tiff, r-readbitmap)[inputs]: Likewise. * gnu/packages/cups.scm (cups-filters, hplip)[inputs]: Likewise. * gnu/packages/display-managers.scm (slim)[inputs]: Likewise. * gnu/packages/ebook.scm (fbreader)[inputs]: Likewise. * gnu/packages/emacs.scm (emacs)[inputs]: Likewise. * gnu/packages/enlightenment.scm (efl)[propagated-inputs]: Likewise. * gnu/packages/fltk.scm (fltk, ntk)[inputs]: Likewise. * gnu/packages/fontutils.scm (fontforge)[inputs]: Likewise. * gnu/packages/freedesktop.scm (weston)[inputs]: Likewise. * gnu/packages/game-development.scm (sfml, allegro, aseprite, python-pygame, eureka, ioquake3)[inputs]: Likewise. * gnu/packages/games.scm (adanaxisgpl, freedroidrpg, irrlicht, minetest, fizmo, supertuxkart, gzdoom, xmoto, xonotic)[inputs]: Likewise. * gnu/packages/gd.scm (gd, perl-gd)[inputs]: Likewise. * gnu/packages/ghostscript.scm (lcms)[inputs]: Likewise. (ghostscript)[inputs, native-inputs]: Likewise. * gnu/packages/gimp.scm (gegl, gimp)[inputs]: Likewise. * gnu/packages/gnome.scm (libgnomeui, eog, tracker-miners, gthumb)[inputs]: Likewise. * gnu/packages/gnunet.scm (libextractor)[inputs]: Likewise. * gnu/packages/gnustep.scm (windowmaker)[inputs]: Likewise. * gnu/packages/graphics.scm (blender, blender-2.79, openimageio, openscenegraph, openscenegraph-3.4, povray, fgallery)[inputs]: Likewise. * gnu/packages/graphviz.scm (graphviz)[inputs]: Likewise. * gnu/packages/gstreamer.scm (gst-plugins-good)[inputs]: Likewise. * gnu/packages/gtk.scm (gdk-pixbuf)[inputs]: Likewise. * gnu/packages/image-processing.scm (dcmtk, mia, vtk, opencv, vips, nip2, vxl, insight-toolkit)[inputs]: Likewise. * gnu/packages/image-viewers.scm (gpicview, luminance-hdr)[inputs]: Likewise. * gnu/packages/image.scm (jpegoptim, libtiff, leptonica, imlib2, freeimage, vigra, libwebp, libmng, jasper, steghide, jp2a)[inputs]: Likewise. * gnu/packages/imagemagick.scm (imagemagick, graphicsmagick)[inputs]: Likewise. * gnu/packages/java.scm (icedtea-6, icedtea-7, openjdk9, openjdk11, openjdk12)[inputs]: Likewise. * gnu/packages/kde-frameworks.scm (khtml)[inputs]: Likewise. * gnu/packages/kodi.scm (kodi)[inputs]: Likewise. * gnu/packages/machine-learning.scm (dlib, tensorflow)[inputs]: Likewise. * gnu/packages/mate.scm (atril, eom)[inputs]: Likewise. * gnu/packages/maths.scm (hdf4, hdf-java, hdf-eos2, netcdf)[inputs]: Likewise. * gnu/packages/netpbm.scm (netpbm)[inputs]: Likewise. * gnu/packages/pdf.scm (zathura-pdf-mupdf, podofo, mupdf, fbida)[inputs]: Likewise. * gnu/packages/photo.scm (libraw, libpano13, enblend-enfuse, darktable, hugin, rawtherapee)[inputs]: Likewise. * gnu/packages/prolog.scm (swi-prolog)[native-inputs]: Likewise. * gnu/packages/python-xyz.scm (python-hdf4, python-pillow)[inputs]: Likewise. * gnu/packages/qt.scm (qtbase, qtwebkit)[inputs]: Likewise. * gnu/packages/rdesktop.scm (freerdp)[inputs]: Likewise. * gnu/packages/scanner.scm (sane-backends, xsane)[inputs]: Likewise. * gnu/packages/scheme.scm (racket)[inputs]: Likewise. * gnu/packages/scribus.scm (scribus)[inputs]: Likewise. * gnu/packages/sdl.scm (sdl-image)[propagated-inputs]: Likewise. (guile-sdl)[native-inputs]: Likewise. * gnu/packages/spice.scm (spice-gtk)[inputs]: Likewise. * gnu/packages/statistics.scm (r-with-tests)[inputs]: Likewise. * gnu/packages/tcl.scm (perl-tk)[inputs]: Likewise. * gnu/packages/upnp.scm (readymedia)[inputs]: Likewise. * gnu/packages/video.scm (mplayer, mpv, v4l-utils, motion)[inputs]: Likewise. * gnu/packages/web-browsers.scm (dillo, links)[inputs]: Likewise. * gnu/packages/web.scm (netsurf)[inputs]: Likewise. * gnu/packages/webkit.scm (webkitgtk)[inputs]: Likewise. * gnu/packages/wine.scm (wine)[inputs]: Likewise. * gnu/packages/wv.scm (wv)[inputs]: Likewise. * gnu/packages/wxwidgets.scm (wxwidgets, wxwidgets-2)[inputs]: Likewise. * gnu/packages/xdisorg.scm (xscreensaver)[inputs]: Likewise. * gnu/packages/xfce.scm (tumbler)[inputs]: Likewise. * gnu/packages/xfig.scm (xfig, transfig)[inputs]: Likewise. * gnu/packages/xorg.scm (xpra)[inputs]: Likewise. Marius Bakke2020-01-22
* | Merge branch 'staging' into core-updatesMarius Bakke2020-01-21
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| * gnu: elemental: Update home page.•••* gnu/packages/maths.scm (elemental)[home-page]: Use repository home page. Tobias Geerinckx-Rice2020-01-19
| * gnu: petsc: Use HTTPS home page.•••* gnu/packages/maths.scm (petsc)[home-page, license]: Use HTTPS. Tobias Geerinckx-Rice2020-01-19
| * gnu: Use HTTPS for www.hdfgroup.org.•••* gnu/packages/maths.scm (hdf5)[home-page, license]: Use HTTPS. (hdf-java, h5check)[source]: Likewise. Tobias Geerinckx-Rice2020-01-17
| * gnu: netcdf: Use HTTPS home page.•••* gnu/packages/maths.scm (netcdf)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2020-01-17
| * gnu: scotch: Use HTTPS home page.•••* gnu/packages/maths.scm (scotch)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2020-01-17
| * Update email address for Amin Bandali.•••* .mailmap: Add name and email addresses for Amin Bandali. * gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm: Update email address for Amin Bandali. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Amin Bandali2020-01-17
* | Merge branch 'master' into core-updatesMarius Bakke2020-01-15
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| * gnu: python-slepc4py: Update to 3.11.0.•••* gnu/packages/maths.scm (python-slepc4py): Update to 3.11.0. Paul Garlick2020-01-14
| * gnu: python-petsc4py: Update to 3.11.0.•••* gnu/packages/maths.scm (python-petsc4py): Update to 3.11.0. Paul Garlick2020-01-14
* | Merge branch 'master' into core-updatesMarius Bakke2020-01-11
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| * gnu: hdf5@1.10: Update to 1.10.6.•••* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.6. Tobias Geerinckx-Rice2020-01-10
| * gnu: lapack: Update to 3.9.0.•••* gnu/packages/maths.scm (lapack): Update to 3.9.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Konrad Hinsen2020-01-07
* | Merge remote-tracking branch 'master' into core-updates.Mathieu Othacehe2019-12-31
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| * gnu: hdf5@1.10: Update to 1.10.5.•••* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5. Remove "hdf5-mpi-deprecations.patch". * gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it. Ludovic Courtès2019-12-13
* | Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner2019-12-12
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| * gnu: Add lrslib.•••* gnu/packages/maths.scm (lrslib): New variable. Andreas Enge2019-12-06
* | Merge branch 'master' into core-updatesMarius Bakke2019-12-05
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| * Merge branch 'staging'Marius Bakke2019-12-04
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| | * Merge branch 'master' into stagingMarius Bakke2019-11-28
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| | * \ Merge branch 'master' into stagingMarius Bakke2019-11-21
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| | * \ \ Merge branch 'master' into stagingMarius Bakke2019-10-21
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| | * \ \ \ Merge branch 'master' into stagingMarius Bakke2019-10-18
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| | * \ \ \ \ Merge branch 'master' into stagingMarius Bakke2019-10-13
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| | * | | | | | gnu: OpenBLAS: Update to 0.3.7.•••* gnu/packages/maths.scm (openblas): Update to 0.3.7. Marius Bakke2019-10-08
| | * | | | | | gnu: OpenBLAS: Incorporate grafted changes.•••* gnu/packages/maths.scm (openblas)[replacement]: Remove. [arguments]: Add NUM_THREADS in #:make-flags. (openblas/fixed-num-threads): Remove variable. Marius Bakke2019-10-08
| * | | | | | | gnu: z3: Update to 4.8.7.•••* gnu/packages/maths.scm (z3): Update to 4.8.7. Tobias Geerinckx-Rice2019-12-01
| * | | | | | | gnu: nauty: Update to 2.6r12.•••* gnu/packages/maths.scm (nauty): Update to 2.6r12. Tobias Geerinckx-Rice2019-12-01
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| * | | | | | gnu: Remove obsolete import of R build system module.•••* gnu/packages/maths.scm: Remove import of (guix build-system r). Ricardo Wurmus2019-11-27
| * | | | | | gnu: r-subplex: Move to (gnu packages cran).•••* gnu/packages/maths.scm (r-subplex): Move from here... * gnu/packages/cran.scm (r-subplex): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2019-11-27
| * | | | | | gnu: r-pracma: Move to (gnu packages cran).•••* gnu/packages/maths.scm (r-pracma): Move from here... * gnu/packages/cran.scm (r-pracma): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2019-11-27