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* Merge branch 'core-updates'Ludovic Courtès2016-08-01
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* gnu: units: Update to 2.13.Ludovic Courtès2016-08-01
| | | | * gnu/packages/maths.scm (units): Update to 2.13.
* gnu: Sync GNU descriptions with upstream.Ludovic Courtès2016-07-29
| | | | | | | | | From 'guix lint -c gnu-description'. * gnu/packages/gnunet.scm (gnunet): Adjust description. * gnu/packages/marst.scm (marst): Likewise. * gnu/packages/maths.scm (c-graph): Likewise. * gnu/packages/networking.scm (macchanger): Likewise.
* gnu: gnuplot: Update to upstream's re-release of 5.0.4.Efraim Flashner2016-07-22
| | | | | * gnu/packages/maths.scm (gnuplot): Add a guix revision number to the version scheme of gnuplot to force an update.
* gnu: muparser: Update source URL.Leo Famulari2016-07-21
| | | | | * gnu/packages/maths.scm (muparser)[source]: Update source URL to new location. Use URL-FETCH instead of SVN-FETCH. Update hash and package revision.
* gnu: Update URLs for sourceforge.net.Leo Famulari2016-07-21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/admin.scm: Update URLs pointing to sourceforge.net. * gnu/packages/audacity.scm: Likewise. * gnu/packages/audio.scm: Likewise. * gnu/packages/bioinformatics.scm: Likewise. * gnu/packages/boost.scm: Likewise. * gnu/packages/cdrom.scm: Likewise. * gnu/packages/code.scm: Likewise. * gnu/packages/compression.scm: Likewise. * gnu/packages/cups.scm: Likewise. * gnu/packages/djvu.scm: Likewise. * gnu/packages/docbook.scm: Likewise. * gnu/packages/documentation.scm: Likewise. * gnu/packages/flashing-tools.scm: Likewise. * gnu/packages/fonts.scm: Likewise. * gnu/packages/fontutils.scm: Likewise. * gnu/packages/games.scm: Likewise. * gnu/packages/ghostscript.scm: Likewise. * gnu/packages/gl.scm: Likewise. * gnu/packages/gnucash.scm: Likewise. * gnu/packages/graphviz.scm: Likewise. * gnu/packages/image.scm: Likewise. * gnu/packages/libreoffice.scm: Likewise. * gnu/packages/libusb.scm: Likewise. * gnu/packages/linux.scm: Likewise. * gnu/packages/lirc.scm: Likewise. * gnu/packages/maths.scm: Likewise. * gnu/packages/mcrypt.scm: Likewise. * gnu/packages/mp3.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/networking.scm: Likewise. * gnu/packages/onc-rpc.scm: Likewise. * gnu/packages/password-utils.scm: Likewise. * gnu/packages/pdf.scm: Likewise. * gnu/packages/perl.scm: Likewise. * gnu/packages/photo.scm: Likewise. * gnu/packages/popt.scm: Likewise. * gnu/packages/python.scm: Likewise. * gnu/packages/rdesktop.scm: Likewise. * gnu/packages/screen.scm: Likewise. * gnu/packages/swig.scm: Likewise. * gnu/packages/tcl.scm: Likewise. * gnu/packages/version-control.scm: Likewise. * gnu/packages/video.scm: Likewise. * gnu/packages/w3m.scm: Likewise. * gnu/packages/web.scm: Likewise. * gnu/packages/wm.scm: Likewise. * gnu/packages/xdisorg.scm: Likewise. * gnu/packages/xml.scm: Likewise.
* gnu: gnuplot: Update to 5.0.4.Efraim Flashner2016-07-21
| | | | * gnu/packages/maths.scm (gnuplot): Update to 5.0.4.
* gnu: superlu-dist: Remove non-free source.Eric Bavier2016-07-20
| | | | | * gnu/packages/maths.scm (superlu-dist)[source]: Replace non-free mc64ad.c source with stub.
* gnu: slepc: Update to 3.7.1.Eric Bavier2016-07-20
| | | | * gnu/packages/maths.scm (slepc): Update to 3.7.1.
* gnu: petsc: Update to 3.7.2.Eric Bavier2016-07-20
| | | | | * gnu/packages/maths.scm (petsc): Update to 3.7.2. [arguments]: Adjust scrubbed files.
* gnu: petsc: Make header generation reproducible.Eric Bavier2016-07-20
| | | | | * gnu/packages/maths.scm (petsc)[arguments]: Scrub timestamp from petscmachineinfo.h header.
* gnu: petsc: Use modify-phases.Eric Bavier2016-07-20
| | | | * gnu/packages/maths.scm (petsc)[arguments]: Use modify-phases.
* gnu: superlu: Update to 5.2.1.Eric Bavier2016-07-20
| | | | | | | | | * gnu/packages/maths.scm (superlu): Update to 5.2.1. [source]: Remove non-free MC64 code. [inputs]: Use openblas instead of lapack's BLAS. [build-system]: Use cmake-build-system. [arguments]: Remove custom phases and replace with CMake flags. [license]: List additional licenses for some source and example files.
* gnu: Add libhilbert.Eric Bavier2016-07-20
| | | | * gnu/packages/maths.scm (libhilbert): New variable.
* gnu: atlas: Use @example in description.Ludovic Courtès2016-07-19
| | | | * gnu/packages/maths.scm (atlas)[description]: Use "@example".
* gnu: atlas: Use cpupower in description.Tobias Geerinckx-Rice2016-07-19
| | | | | | | * gnu/packages/maths.scm (atlas)[description]: Replace 'cpufreq-selector' with its replacement 'cpupower --governor'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: lapack: Build the LAPACKE library.Ricardo Wurmus2016-07-17
| | | | * gnu/packages/maths.scm (lapack)[arguments]: Add "-DLAPACKE=ON".
* gnu: openspecfun: Update to 0.5.2.Efraim Flashner2016-07-03
| | | | * gnu/packages/maths.scm (openspecfun): Update to 0.5.2.
* gnu: openlibm: Update to 0.5.1.Efraim Flashner2016-07-03
| | | | * gnu/packages/maths.scm (openlibm): Update to 0.5.1.
* gnu: ceres-solver: Propagate GLOG.Ludovic Courtès2016-06-29
| | | | | * gnu/packages/maths.scm (ceres)[inputs]: Move GLOG to... [propagated-inputs]: ... here. New field.
* gnu: ceres-solver: Depend on glog.Ludovic Courtès2016-06-29
| | | | | * gnu/packages/maths.scm (ceres)[arguments]: Remove -DMINIGLOG=ON. [inputs]: Add GLOG.
* gnu: ipopt: Use libblas from LAPACK, and fix 'Libs' in 'ipopt.pc'.Ludovic Courtès2016-06-03
| | | | | * gnu/packages/maths.scm (ipopt)[inputs]: Remove OPENBLAS. [arguments]: New field.
* gnu: Add ceres-solver.Ludovic Courtès2016-06-03
| | | | * gnu/packages/maths.scm (ceres): New variable.
* gnu: Add IpOpt.Ludovic Courtès2016-06-02
| | | | * gnu/packages/maths.scm (ipopt): New variable.
* gnu: wxmaxima: Wrap with GSETTINGS_SCHEMA_DIR and XDG_DATA_DIRS.宋文武2016-05-28
| | | | | | | Fixes <http://bugs.gnu.org/22709> and <http://bugs.gnu.org/23260>. * gnu/packages/math.scm (wxmaxima)[arguments]: Wrap with GSETTINGS_SCHEMA_DIR and XDG_DATA_DIRS.
* gnu: Rename texlive module to tex.Roel Janssen2016-05-26
| | | | | | | | | | | | | | | | | | | * gnu/local.mk (GNU_SYSTEM_MODULES): Rename texlive.scm to tex.scm. * gnu/packages/texlive.scm: Rename file to tex.scm. * gnu/packages/tex.scm: Renamed from texlive.scm. * gnu/packages/algebra.scm: Adjust accordingly. * gnu/packages/docbook.scm: Likewise. * gnu/packages/engineering.scm: Likewise. * gnu/packages/gettext.scm: Likewise. * gnu/packages/gnome.scm: Likewise. * gnu/packages/lisp.scm: Likewise. * gnu/packages/maths.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/ocaml.scm: Likewise. * gnu/packages/photo.scm: Likewise. * gnu/packages/plotutils.scm: Likewise. * gnu/packages/python.scm: Likewise. * gnu/packages/scheme.scm: Likewise.
* gnu: r-rcpparmadillo: Update to 0.6.700.6.0.Ricardo Wurmus2016-05-20
| | | | | | * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0. * gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 6.700.6.
* gnu: armadillo: Update to 6.700.7.Ricardo Wurmus2016-05-20
| | | | * gnu/packages/maths.scm (armadillo): Update to 6.700.7.
* gnu: flann: Do not install .a files.Ludovic Courtès2016-05-19
| | | | * gnu/packages/maths.scm (flann)[arguments]: Add #:phases.
* gnu: flann: Strip .mex file.Ludovic Courtès2016-05-19
| | | | * gnu/packages/maths.scm (flann)[arguments]: Add #:strip-directories.
* gnu: octave: Update to 4.0.2.Kei Yamashita2016-05-19
| | | | | | | * gnu/packages/maths.scm (octave): Update to 4.0.2. [inputs]: Added cyrus-sasl, openssl. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: gmsh: Add missing inputs.Efraim Flashner2016-05-16
| | | | * gnu/packages/maths.scm (gmsh)[inputs]: Add fontconfig, libxft.
* gnu: wxmaxima: Update to 16.04.2.宋文武2016-05-15
| | | | * gnu/packages/maths.scm (wxmaxima): Update to 16.04.2.
* gnu: Add NetCDF.Eric Bavier2016-05-12
| | | | * gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): New variables.
* gnu: Add Matio.Eric Bavier2016-05-12
| | | | * gnu/packages/maths.scm (matio): New variable.
* gnu: Add h5check.Eric Bavier2016-05-12
| | | | * gnu/packages/maths.scm (h5check): New variable.
* gnu: Add hdf5-openmpi.Eric Bavier2016-05-12
| | | | * gnu/packages/maths.scm (hdf5-openmpi): New variable.
* gnu: hdf5: Have configure honor SOURCE_DATE_EPOCH.Eric Bavier2016-05-12
| | | | | | * gnu/packages/patches/hdf5-config-date.patch: New patch. * gnu/packages/maths.scm (hdf5)[source]: Use it. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: hdf5: Patch output references to zlib.Eric Bavier2016-05-12
| | | | | * gnu/packages/maths.scm (hdf5)[arguments]: Use modify-phases. Add 'patch-references' phase.
* gnu: hdf5: Update to 1.8.17.Eric Bavier2016-05-12
| | | | * gnu/packages/maths.scm (hdf5): Update to 1.8.17.
* gnu: Add HYPRE.Eric Bavier2016-05-12
| | | | | | | * gnu/packages/maths.scm (hypre, hypre-openmpi): New variables. * gnu/packages/patches/hypre-doc-tables.patch, gnu/packages/patches/hypre-ldflags.patch: New files. * gnu-system.am (dist_patch_DATA): Add them.
* gnu: Add nlopt.Roel Janssen2016-05-03
| | | | | | * gnu/packages/maths.scm (nlopt): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: r-rcpparmadillo: Update to 0.6.700.3.0.Ricardo Wurmus2016-04-26
| | | | | * gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 6.700.3. * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.3.0.
* gnu: armadillo: Update to 6.700.4.Ricardo Wurmus2016-04-20
| | | | * gnu/packages/maths.scm (armadillo): Update to 6.700.4.
* gnu: packages: Use 'search-patches' everywhere.Alex Kost2016-04-14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/abiword.scm: Use 'search-patches' for 'patches' field. * gnu/packages/acl.scm: Likewise. * gnu/packages/admin.scm: Likewise. * gnu/packages/algebra.scm: Likewise. * gnu/packages/animation.scm: Likewise. * gnu/packages/apr.scm: Likewise. * gnu/packages/audacity.scm: Likewise. * gnu/packages/audio.scm: Likewise. * gnu/packages/autotools.scm: Likewise. * gnu/packages/avahi.scm: Likewise. * gnu/packages/backup.scm: Likewise. * gnu/packages/base.scm: Likewise. * gnu/packages/bash.scm: Likewise. * gnu/packages/bioinformatics.scm: Likewise. * gnu/packages/cdrom.scm: Likewise. * gnu/packages/ci.scm: Likewise. * gnu/packages/cmake.scm: Likewise. * gnu/packages/cpio.scm: Likewise. * gnu/packages/cross-base.scm: Likewise. * gnu/packages/dico.scm: Likewise. * gnu/packages/doxygen.scm: Likewise. * gnu/packages/ebook.scm: Likewise. * gnu/packages/elf.scm: Likewise. * gnu/packages/emacs.scm: Likewise. * gnu/packages/engineering.scm: Likewise. * gnu/packages/firmware.scm: Likewise. * gnu/packages/flashing-tools.scm: Likewise. * gnu/packages/fltk.scm: Likewise. * gnu/packages/ftp.scm: Likewise. * gnu/packages/games.scm: Likewise. * gnu/packages/gawk.scm: Likewise. * gnu/packages/gcc.scm: Likewise. * gnu/packages/gd.scm: Likewise. * gnu/packages/ghostscript.scm: Likewise. * gnu/packages/glib.scm: Likewise. * gnu/packages/gnome.scm: Likewise. * gnu/packages/gnucash.scm: Likewise. * gnu/packages/gnunet.scm: Likewise. * gnu/packages/gnupg.scm: Likewise. * gnu/packages/gnuzilla.scm: Likewise. * gnu/packages/graphics.scm: Likewise. * gnu/packages/grub.scm: Likewise. * gnu/packages/gtk.scm: Likewise. * gnu/packages/guile.scm: Likewise. * gnu/packages/icu4c.scm: Likewise. * gnu/packages/idutils.scm: Likewise. * gnu/packages/image.scm: Likewise. * gnu/packages/imagemagick.scm: Likewise. * gnu/packages/irc.scm: Likewise. * gnu/packages/ldc.scm: Likewise. * gnu/packages/libcanberra.scm: Likewise. * gnu/packages/libevent.scm: Likewise. * gnu/packages/libreoffice.scm: Likewise. * gnu/packages/libunwind.scm: Likewise. * gnu/packages/libusb.scm: Likewise. * gnu/packages/linux.scm: Likewise. * gnu/packages/lirc.scm: Likewise. * gnu/packages/llvm.scm: Likewise. * gnu/packages/lsh.scm: Likewise. * gnu/packages/lua.scm: Likewise. * gnu/packages/lxqt.scm: Likewise. * gnu/packages/mail.scm: Likewise. * gnu/packages/maths.scm: Likewise. * gnu/packages/mcrypt.scm: Likewise. * gnu/packages/messaging.scm: Likewise. * gnu/packages/mit-krb5.scm: Likewise. * gnu/packages/mp3.scm: Likewise. * gnu/packages/multiprecision.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/ninja.scm: Likewise. * gnu/packages/nvi.scm: Likewise. * gnu/packages/ocaml.scm: Likewise. * gnu/packages/orpheus.scm: Likewise. * gnu/packages/ots.scm: Likewise. * gnu/packages/parallel.scm: Likewise. * gnu/packages/patchutils.scm: Likewise. * gnu/packages/pcre.scm: Likewise. * gnu/packages/pdf.scm: Likewise. * gnu/packages/perl.scm: Likewise. * gnu/packages/plotutils.scm: Likewise. * gnu/packages/polkit.scm: Likewise. * gnu/packages/pulseaudio.scm: Likewise. * gnu/packages/python.scm: Likewise. * gnu/packages/qemu.scm: Likewise. * gnu/packages/qt.scm: Likewise. * gnu/packages/ratpoison.scm: Likewise. * gnu/packages/rdf.scm: Likewise. * gnu/packages/readline.scm: Likewise. * gnu/packages/rush.scm: Likewise. * gnu/packages/scheme.scm: Likewise. * gnu/packages/screen.scm: Likewise. * gnu/packages/sdl.scm: Likewise. * gnu/packages/slim.scm: Likewise. * gnu/packages/ssh.scm: Likewise. * gnu/packages/tcl.scm: Likewise. * gnu/packages/tcsh.scm: Likewise. * gnu/packages/texinfo.scm: Likewise. * gnu/packages/tls.scm: Likewise. * gnu/packages/tor.scm: Likewise. * gnu/packages/tv.scm: Likewise. * gnu/packages/valgrind.scm: Likewise. * gnu/packages/version-control.scm: Likewise. * gnu/packages/video.scm: Likewise. * gnu/packages/vpn.scm: Likewise. * gnu/packages/vtk.scm: Likewise. * gnu/packages/w3m.scm: Likewise. * gnu/packages/web.scm: Likewise. * gnu/packages/wicd.scm: Likewise. * gnu/packages/wm.scm: Likewise. * gnu/packages/xdisorg.scm: Likewise. * gnu/packages/xfce.scm: Likewise. * gnu/packages/xiph.scm: Likewise. * gnu/packages/xml.scm: Likewise. * gnu/packages/xorg.scm: Likewise. * gnu/packages/zip.scm: Likewise.
* gnu: Add r-pracma.Roel Janssen2016-04-12
| | | | | | * gnu/packages/maths.scm (r-pracma): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add c-graph.John Darrington2016-04-09
| | | | * gnu/packages/maths.scm (c-graph): New variable.
* gnu: Add cddlib.Andreas Enge2016-04-05
| | | | * gnu/packages/maths.scm (cddlib): New variable.
* gnu: Add 4ti2.Andreas Enge2016-04-05
| | | | * gnu/packages/maths.scm (4ti2): New variable.
* gnu: Move pspp from maths.scm to statistics.scmJohn Darrington2016-04-04
| | | | | * gnu/packages/maths.scm (pspp): Deleted. * gnu/packages/statistics.scm (pspp): New variable.
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