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* gnu: netcdf: Upgrade to 4.4.1.1.Eric Bavier2016-12-01
| | | | | | | | | | | * gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): Upgrade to 4.4.1.1. [source]: Adjust patch name, add netcdf-tst_h_par.patch * gnu/packages/patches/netcdf-config.date.patch: Rename to... * gnu/packages/patches/netcdf-date-time.patch: ...this. Adjust for latest source. * gnu/packages/patches/netcdf-tst_h_par.patch: New patch. * gnu/local.mk (dist_patch_DATA): Adjust patches.
* gnu: hdf5: Update to 1.8.18 [fixes CVE-2016-{4330,4331,4332,4333}].Leo Famulari2016-11-30
| | | | | * gnu/packages/maths.scm (hdf5): Update to 1.8.18. [source]: Add alternate URL.
* gnu: hdf5: Build the C++ interface.Ludovic Courtès2016-11-24
| | | | * gnu/packages/maths.scm (hdf5)[arguments]: Add #:configure-flags.
* gnu: Remove redundancy where mkdir-p <dir> is followed by install-file ↵Petter2016-11-21
| | | | | | | | | | | | | | | | | <file> <dir>. * gnu/packages/bioinformatics.scm (bwa)[arguments]: Remove redundant mkdir-p. (eigensoft)[arguments]: Likewise. (snap-aligner)[arguments]: Likewise. (pardre)[arguments]: Likewise. (piranha)[arguments]: Likewise. * gnu/packages/maths.scm (hypre)[arguments]: Likewise. * gnu/packages/mp3.scm (mpc123)[arguments]: Likewise. * gnu/packages/music.scm (tuxguitar)[arguments]: Likewise. * gnu/packages/pdf.scm (impressive)[arguments]: Likewise. * gnu/packages/qemu.scm (qemu)[arguments]: Likewise. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: octave: Update to 4.2.0.Efraim Flashner2016-11-15
| | | | | | * gnu/packages/maths.scm (octave): Update to 4.2.0. [native-inputs]: Add lzip. [home-page]: Use https.
* Merge branch 'core-updates'Ludovic Courtès2016-11-13
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| * Merge branch 'master' into core-updatesMark H Weaver2016-11-06
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| * \ Merge branch 'master' into core-updatesLeo Famulari2016-10-29
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| * \ \ Merge branch 'master' into core-updatesLeo Famulari2016-10-26
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| * \ \ \ Merge branch 'master' into core-updatesMark H Weaver2016-10-19
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| * \ \ \ \ Merge branch 'master' into core-updatesMark H Weaver2016-10-13
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| * \ \ \ \ \ Merge branch 'master' into core-updatesMark H Weaver2016-10-12
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| * \ \ \ \ \ \ Merge branch 'master' into core-updatesLeo Famulari2016-10-05
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| * \ \ \ \ \ \ \ Merge branch 'master' into core-updatesLudovic Courtès2016-09-30
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| * | | | | | | | | gnu: Add and use gettext-minimal.Alex Kost2016-09-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/gettext.scm (gnu-gettext): Rename to... (gettext-minimal): ... this. Adjust synopsis and description. (gnu-gettext): Inherit from it. (po4a): Use 'gettext-minimal' instead of 'gnu-gettext'. * gnu/packages/acl.scm: Likewise. * gnu/packages/admin.scm: Likewise. * gnu/packages/apl.scm: Likewise. * gnu/packages/attr.scm: Likewise. * gnu/packages/audio.scm: Likewise. * gnu/packages/base.scm: Likewise. * gnu/packages/cdrom.scm: Likewise. * gnu/packages/commencement.scm: Likewise. * gnu/packages/crypto.scm: Likewise. * gnu/packages/databases.scm: Likewise. * gnu/packages/disk.scm: Likewise. * gnu/packages/documentation.scm: Likewise. * gnu/packages/education.scm: Likewise. * gnu/packages/engineering.scm: Likewise. * gnu/packages/enlightenment.scm: Likewise. * gnu/packages/fcitx.scm: Likewise. * gnu/packages/fontutils.scm: Likewise. * gnu/packages/freedesktop.scm: Likewise. * gnu/packages/games.scm: Likewise. * gnu/packages/gkrellm.scm: Likewise. * gnu/packages/glib.scm: Likewise. * gnu/packages/gnome.scm: Likewise. * gnu/packages/grub.scm: Likewise. * gnu/packages/gtk.scm: Likewise. * gnu/packages/guile.scm: Likewise. * gnu/packages/ibus.scm: Likewise. * gnu/packages/irc.scm: Likewise. * gnu/packages/iso-codes.scm: Likewise. * gnu/packages/kde-frameworks.scm: Likewise. * gnu/packages/kodi.scm: Likewise. * gnu/packages/linux.scm: Likewise. * gnu/packages/man.scm: Likewise. * gnu/packages/maths.scm: Likewise. * gnu/packages/mono.scm: Likewise. * gnu/packages/mp3.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/nano.scm: Likewise. * gnu/packages/networking.scm: Likewise. * gnu/packages/package-management.scm: Likewise. * gnu/packages/pdf.scm: Likewise. * gnu/packages/sawfish.scm: Likewise. * gnu/packages/statistics.scm: Likewise. * gnu/packages/terminals.scm: Likewise. * gnu/packages/version-control.scm: Likewise. * gnu/packages/vpn.scm: Likewise. * gnu/packages/w3m.scm: Likewise. * gnu/packages/webkit.scm: Likewise. * gnu/packages/wicd.scm: Likewise. * gnu/packages/wine.scm: Likewise. * gnu/packages/xdisorg.scm: Likewise. * gnu/packages/xorg.scm: Likewise.
| * | | | | | | | | gnu: openblas: Update to 0.2.19.Leo Famulari2016-09-13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (openblas): Update to 0.2.19.
| * | | | | | | | | Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner2016-08-29
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| * | | | | | | | | | gnu: openblas: Update to 0.2.18.Ricardo Wurmus2016-08-14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (openblas): Update to 0.2.18.
* | | | | | | | | | | gnu: gmsh: Update to 2.14.1Paul Garlick2016-11-10
| |_|_|_|_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (gmsh): Update to 2.14.1. [source]: Use new uri. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* | | | | | | | | | gnu: maxima: Update to 5.38.1.Kei Kebreau2016-11-03
| |_|_|_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (maxima): Update to 5.38.1.
* | | | | | | | | gnu: mumps: Upgrade to 5.0.2.Eric Bavier2016-10-28
| |_|_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (mumps): Upgrade to 5.0.2. [arguments]: Properly return boolean from install phase.
* | | | | | | | gnu: r-rcpparmadillo: Update to 0.7.500.0.0.Ricardo Wurmus2016-10-26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.500.0. * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
* | | | | | | | gnu: armadillo: Update to 7.500.0.Ricardo Wurmus2016-10-26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (armadillo): Update to 7.500.0.
* | | | | | | | gnu: coda: Remove bundled libraries.Thomas Danckaert2016-10-25
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (coda): Remove bundled libraries. [source]: Add patch and snippet to remove bundled zlib, pcre and expat. [inputs]: Add system zlib, pcre and expat. * gnu/packages/patches/coda-use-system-libs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | | | | | | | gnu: Add coda.Thomas Danckaert2016-10-24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (coda): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | | | | | | | gnu: Add hdf-eos2.Thomas Danckaert2016-10-24
| |_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (hdf-eos2): New variable. * gnu/packages/patches/hdf-eos2-build-shared.patch: New file. * gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file. * gnu/packages/patches/hdf-eos2-fortrantests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patches. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | | | | | | gnu: hdf4: Really fix non-x86 architectures.Andreas Enge2016-10-18
| |_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This is a follow-up to commit 60da9fb1100787c49ed4910eacf50e83c6462dcc. * gnu/local.mk (dist_patch_DATA): Register patch. * gnu/packages/maths.scm (hdf4)[source]: Add patch.
* | | | | | gnu: Add hdf4Thomas Danckaert2016-10-12
| |_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (hdf4, hdf4-alt): New variables. * gnu/packages/patches/hdf4-reproducibility.patch: New file. * gnu/packages/patches/hdf4-shared-fortran.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patches. Co-Authored-By: Jeremy Robst <jpro@bas.ac.uk> Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | | | | gnu: Add hdf-eos5.Thomas Danckaert2016-10-06
| |_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (hdf-eos5): New variable. * gnu/packages/patches/hdf-eos5-build-shared.patch: New file. * gnu/packages/patches/hdf-eos5-remove-gctp.patch: New file. * gnu/packages/patches/hdf-eos5-fix-szip.patch: New file. * gnu/packages/patches/hdf-eos5-fortrantests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patches. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | | | gnu: Add Vc.Leo Famulari2016-10-05
| | | | | | | | | | | | | | | | * gnu/packages/maths.scm (vc): New variable.
* | | | gnu: gsl: Disable failing tests on i686.Ludovic Courtès2016-10-05
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/gsl-test-i686.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (gsl)[source](patches): New field.
* | | | gnu: gsl: Update to 2.2.1.Ludovic Courtès2016-10-04
| | | | | | | | | | | | | | | | * gnu/packages/maths.scm (gsl): Update to 2.2.1.
* | | | gnu: gctp: 'license' field now has a <license> value.Ludovic Courtès2016-10-03
| |_|/ |/| | | | | | | | * gnu/packages/maths.scm (gctp)[license]: Change to a <license> record.
* | | gnu: Add gctp.Thomas Danckaert2016-09-27
| | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (gctp): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* | | gnu: openlibm: Remove support for mips.Efraim Flashner2016-09-21
| | | | | | | | | | | | | | | * gnu/packages/maths.scm (openlibm)[supported-systems]: New field, remove support for mips64el.
* | | gnu: r-rcpparmadillo: Update to 0.7.400.2.0.Ricardo Wurmus2016-09-12
| | | | | | | | | | | | | | | * gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.400.2. * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.400.2.0.
* | | gnu: r-pracma: Update to 1.9.5.Ricardo Wurmus2016-09-12
| | | | | | | | | | | | | | | * gnu/packages/maths.scm (r-pracma): Update to 1.9.5. [propagated-inputs]: Add "r-quadprog".
* | | gnu: Add r-quadprog.Ricardo Wurmus2016-09-12
| | | | | | | | | | | | * gnu/packages/maths.scm (r-quadprog): New variable.
* | | Revert "gnu: gsl: Update to 2.2."Mark H Weaver2016-09-01
| | | | | | | | | | | | | | | | | | | | | | | | This reverts commit b16b16e6c2ba9780ebdf936c325e06ebcc0a950b. Rationale: gsl-2.2 consistently fails its test suite on i686. Inkscape depends on gsl, and the grub background image is converted using inkscape, so i686 systems can no longer be built.
* | | gnu: gsl: Update to 2.2.Efraim Flashner2016-08-30
| |/ |/| | | | | * gnu/packages/maths.scm (gsl): Update to 2.2.
* | gnu: octave: Update to 4.0.3.Kei Kebreau2016-08-27
| | | | | | | | | | * gnu/packages/maths.scm (octave): Update to 4.0.3. [inputs]: Remove unnecessary curl, cyrus-sasl and openssl dependencies.
* | gnu: atlas: Update to 3.10.3.Efraim Flashner2016-08-22
| | | | | | | | * gnu/packages/maths.scm (atlas): Update to 3.10.3.
* | gnu: atlas: Use 'modify-phases'.Efraim Flashner2016-08-19
|/ | | | * gnu/packages/maths.scm (atlas)[arguments]: Use 'modify-phases'.
* Merge branch 'core-updates'Mark H Weaver2016-08-04
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| * Merge branch 'master' into core-updatesMark H Weaver2016-07-31
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| * | gnu: dealii: Update to 8.4.1.Andreas Enge2016-07-31
| | | | | | | | | | | | | | | * gnu/packages/maths.scm (dealii): Update to 8.4.1. * gnu/packages/patches/dealii-p4est-interface.patch: Remove file.
| * | Merge branch 'master' into core-updatesMark H Weaver2016-07-29
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| * | | gnu: lpsolve: Fix compilation issue.Ludovic Courtès2016-07-26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Reported by Andreas Enge <andreas@enge.fr> at <https://lists.gnu.org/archive/html/guix-devel/2016-07/msg01018.html>. * gnu/packages/maths.scm (lpsolve)[source]: Augment 'snippet'.
| * | | gnu: lpsolve: Fail as early as possible.Ludovic Courtès2016-07-26
| | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (lpsolve)[arguments]: In 'build' phase, check the return value of 'system*' and honor it.
* | | | Revert "Merge branch 'core-updates'"Mark H Weaver2016-08-04
| | | | | | | | | | | | | | | | This reverts commit 455859a50f88f625d13fc2f304111f02369b366b.
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