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* gnu: z3: Build Python bindings.Theodoros Foradis2017-08-21
| | | | | | | | | | * gnu/packages/maths.scm (z3): Add python bindings. [build-system]: Change to cmake-build-system. [arguments]: Remove "changedir" phase. Add "bootstrap" and "make-test-z3" phases; replace the "check" phase. Add #:configure-flags. Remove #:test-target. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: hdf4: Fix building on aarch64.Efraim Flashner2017-08-16
| | | | | * gnu/packages/maths.scm (hdf4)[arguments]: Add a phase to improve detection and support for aarch64-linux.
* gnu: wxmaxima: Update to 17.05.1.Kei Kebreau2017-08-13
| | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 17.05.1. [arguments]: Put "autoconf" phase after the "unpack" phase. Fix indentation.
* gnu: dealii: Update to 8.5.0.Eric Bavier2017-08-09
| | | | | | | * gnu/packages/maths.scm (dealii): Update to 8.5.0. [arguments]: Delete 'hint-example-prefix phase, which would need adjusting for this version. Users can use e.g. 'export DEAL_II_DIR=$GUIX_ENVIRONMENT'. Adjust configuration flags.
* gnu: suitesparse: Update to 4.5.5.Eric Bavier2017-08-09
| | | | | | | | * gnu/packages/maths.scm (suitesparse): Update to 4.5.5. [source]: Add 'modules' and 'snippet' field to remove bundled source. [arguments]: Remove 'prepare-out' phase. Adjust #:make-flags for metis. Make build parallel, since it now appears to be safe. [inputs]: Add metis.
* gnu: suitesparse: Use modify-phases.Eric Bavier2017-08-09
| | | | * gnu/packages/maths.scm (suitesparse)[arguments]: Use modify-phases.
* gnu: petsc, slepc: Use 'parallel-job-count'.Eric Bavier2017-08-09
| | | | | | | * gnu/packages/maths.scm (petsc, slepc)[arguments]: Set #:make-flags to override default unlimited '-j'. (petsc)[arguments]: Scrub build machine cores from installed files in 'clean-local-references' phase.
* gnu: slepc: Update to 3.7.4.Eric Bavier2017-08-09
| | | | | * gnu/packages/maths.scm (slepc): Update to 3.7.4. [source]: Use direct source link. Remove 'file-name' field.
* gnu: petsc: Update to 3.7.6.Eric Bavier2017-08-09
| | | | * gnu/packages/maths.scm (petsc): Update to 3.7.6.
* gnu: cubicle: Fix evaluation.Marius Bakke2017-08-07
| | | | | * gnu/packages/maths.scm (cubicle)[native-inputs]: Retrieve WHICH from (gnu packages base).
* gnu: Add cubicle.Julien Lepiller2017-08-05
| | | | * gnu/packages/maths.scm (cubicle): New variable.
* gnu: r-pracma: Update to 2.0.7.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/maths.scm (r-pracma): Update to 2.0.7.
* gnu: vc: Limit to x86_64 and i686.Efraim Flashner2017-08-03
| | | | * gnu/packages/maths.scm (vc)[supported-systems]: New field.
* gnu: hdf4: Update to 4.12.13.Thomas Danckaert2017-08-02
| | | | * gnu/packages/maths.scm (hdf4): Update to 4.12.13.
* gnu: Add z3.Theodoros Foradis2017-07-29
| | | | | | * gnu/packages/maths.scm (z3): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: glpk: Update to 4.63.Efraim Flashner2017-07-26
| | | | * gnu/packages/maths.scm (glpk): Update to 4.63.
* gnu: maxima: Ensure binutils are available at runtime.Kei Kebreau2017-07-25
| | | | | * gnu/packages/maths.scm (maxima)[arguments]: Use modify-phases syntax. Modify 'post-install' phase.
* Revert "gnu: maxima: Ensure gcc is available at runtime."Kei Kebreau2017-07-25
| | | | | | This reverts commit f2fa86cc82b5941bde63b666337eea59aa609e55. Commit 5ea8dbf0c906d51779ba0cf775ec9967f5f42382 fixes the underlying issue in GNU Common Lisp.
* gnu: lapack: Fix hash of release 3.7.1Maxim Cournoyer2017-07-20
| | | | | | | | | Apparently the release was modified (cleaned-up) in-place. An issue was opened at https://github.com/Reference-LAPACK/lapack-release/issues/4. * gnu/packages/maths.scm (lapack): Fix sha256 hash. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: wxmaxima: Update to 17.05.0.Kei Kebreau2017-07-08
| | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 17.05.0. [source]: Update URL and add file-name. [native-inputs]: Add autoconf, automake and gettext-minimal. [arguments]: Add 'autoconf' phase.
* gnu: maxima: Ensure gcc is available at runtime.Kei Kebreau2017-07-07
| | | | | * gnu/packages/maths.scm (maxima)[inputs]: Add gcc. [arguments]: Use modify-phases syntax. Add 'set-gcc-path' phase.
* gnu: itpp: Use texlive-tiny and ghostscript.Ricardo Wurmus2017-06-30
| | | | | * gnu/packages/maths.scm (itpp)[native-inputs]: Replace texlive-minimal with texlive-tiny; add ghostscript.
* gnu: gnuplot: Use texlive-tiny.Ricardo Wurmus2017-06-30
| | | | | * gnu/packages/maths.scm (gnuplot)[native-inputs]: Replace texlive-minimal with texlive-tiny.
* gnu: lapack: Install libraries to PREFIX/lib, not PREFIX/lib64.Ludovic Courtès2017-06-29
| | | | | | | | | This fixes a regression introduced in ef39a17717a10a7f406730258acfdb07934c7255, which would break python-scipy ("undefined reference to `zungqr_'"). * gnu/packages/maths.scm (lapack)[arguments]: Add "-DCMAKE_INSTALL_LIBDIR" to #:configure-flags.
* gnu: scotch: Build in 64-bit mode on 64-bit machines.Ludovic Courtès2017-06-26
| | | | | * gnu/packages/maths.scm (scotch)[arguments] <configure>: Add "INTSIZE64" CPP flag.
* gnu: lapack: Build with LAPACKE_WITH_TMG=ON.Ludovic Courtès2017-06-26
| | | | | * gnu/packages/maths.scm (lapack)[arguments]: Pass "-DLAPACKE_WITH_TMG=ON".
* gnu: lapack: Update to 3.7.1.Ludovic Courtès2017-06-26
| | | | * gnu/packages/maths.scm (lapack): Update to 3.7.1.
* gnu: hdf5: Update to 1.8.19.Thomas Danckaert2017-06-25
| | | | | * gnu/packages/maths.scm (hdf5): Update to 1.8.19. [source]: Update uri.
* gnu: gsl: Update to 2.4.Arun Isaac2017-06-21
| | | | | * gnu/packages/maths.scm (gsl): Update to 2.4. [arguments]: Remove #:parallel-tests?.
* gnu: Move contents of zip module into compression module.Arun Isaac2017-06-20
| | | | | | | | | | | | | | | * gnu/packages/zip.scm (zip, unzip, zziplib, perl-zip): Move to... * gnu/packages/compression.scm: ...here. * gnu/packages/zip.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Unregister deleted file. * po/packages/POTFILES.in: Unregister deleted file. * gnu/packages/{audio, avr, bioinformatics, busybox, cdrom, ci, compression, docbook, documentation, fonts, fpga, game-development, games, gl, gnome, gnuzilla, graphics, guile, haskell, image, java, kodi, ldc, libreoffice, markup, maths, mc, monitoring, music, php, pretty-print, python, scheme, smalltalk, statistics, synergy, tex, textutils, video, web-browsers, xml, zip}.scm, guix/build-system/{ant, font}.scm, guix/{download, packages}.scm: Adapt module import.
* gnu: glpk: Update to 4.62.Efraim Flashner2017-06-19
| | | | * gnu/packages/maths.scm (glpk): Update to 4.62.
* gnu: maxima: Update to 5.40.0.Kei Kebreau2017-06-06
| | | | * gnu/packages/maths.scm (maxima): Update to 5.40.0.
* gnu: Add ocaml4.01-gsl.Ben Woodcroft2017-05-10
| | | | * gnu/packages/maths.scm (ocaml4.01-gsl): New variable.
* gnu: Add netcdf-fortran.Thomas Danckaert2017-04-30
| | | | * gnu/packages/maths.scm (netcdf-fortran): New variable.
* gnu: gnuplot: Update to 5.0.6.Kei Kebreau2017-04-22
| | | | * gnu/packages/maths.scm (gnuplot): Update to 5.0.6.
* gnu: Fix typos in descriptions.Tobias Geerinckx-Rice2017-04-17
| | | | | | | | | | | | | | | | | | | | | | * gnu/packages/admin.scm (di)[description]: Likewise. * gnu/packages/bioinformatics.scm (r-annotate)[description]: Likewise. * gnu/packages/datastructures.scm (sparsehash)[description]: Likewise. * gnu/packages/dns.scm (knot)[description]: Likewise. * gnu/packages/emacs.scm (emacs-idle-highlight)[synopsis, description]: Likewise. * gnu/packages/gnome.scm (libpeas)[description]: Likewise. * gnu/packages/gtk.scm (python2-pygtk)[description]: Likewise. * gnu/packages/kde-frameworks.scm (kactivities)[description]: Fix typo. * gnu/packages/libevent.scm (perl-anyevent)[description]: Likewise. * gnu/packages/machine-learning.scm (ghmm)[description]: Likewise. * gnu/packages/mail.scm (mlmmj)[description]: Likewise. * gnu/packages/maths.scm (vc)[description]: Likewise. * gnu/packages/music.scm (gx-super-fuzz-lv2)[description]: Likewise. * gnu/packages/networking.scm (nload)[description]: Likewise. * gnu/packages/python.scm (python-execnet)[description]: Likewise. * gnu/packages/terminals.scm (tilda)[description]: Likewise. * gnu/packages/python.scm (python-execnet, python-tables) (python2-coverage-test-runner, python2-rope)[description]: Likewise.
* gnu: octave: Build with gl2ps support.Arun Isaac2017-04-08
| | | | | | * gnu/packages/maths.scm (octave)[inputs]: Add gl2ps. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: flann: Move .mex file to a separate "octave" output.Ludovic Courtès2017-04-07
| | | | | | | | That way the closure of flann:out is down from 1 GiB to 290 MiB. * gnu/packages/maths.scm (flann)[outputs]: New field. [arguments]: Add 'set-octave-directory' phase.
* gnu: armadillo: Change license to ASL 2.0.Ricardo Wurmus2017-04-06
| | | | | | | Armadillo versions 7.800 and onwards are licensed under the Apache License 2.0. * gnu/packages/maths.scm (armadillo)[license]: Change to ASL 2.0.
* gnu: Remove armadillo-for-rcpparmadillo.Ricardo Wurmus2017-04-06
| | | | | | | | This package is no longer useful, because upstream does not keep the tarballs of older releases. We use the bundled armadillo sources in the r-rccparmadillo package instead. * gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Remove variable.
* gnu: armadillo: Update to 7.800.2.Ricardo Wurmus2017-04-06
| | | | * gnu/packages/maths.scm (armadillo): Update to 7.800.2.
* gnu: r-pracma: Update to 2.0.4.Ricardo Wurmus2017-04-06
| | | | * gnu/packages/maths.scm (r-pracma): Update to 2.0.4.
* Merge branch 'master' into core-updatesMarius Bakke2017-03-30
|\ | | | | | | Most conflicts are from 6fd52309b8f52c9bb59fccffac53e029ce94b698.
| * gnu: Use HTTPS for almost all gnu.org HOME-PAGEs.Tobias Geerinckx-Rice2017-03-30
| | | | | | | | All HTTP gnu.org (and supported subdomain) HOME-PAGEs changed to HTTPS.
* | gnu: gsl: Disable tests on aarch64-linux.Efraim Flashner2017-03-28
| | | | | | | | | | | | * gnu/packages/maths.scm (gsl)[arguments]: Do not run the test suite on aarch64-linux. [home-page]: Use https.
* | Merge branch 'master' into core-updatesLeo Famulari2017-03-27
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| * gnu: gnuplot: Enable tikz backend.Danny Milosavljevic2017-03-27
| | | | | | | | * gnu/packages/maths.scm (gnuplot)[inputs]: Add lua.
* | gnu: scotch: Build with flex-2.6.1.Efraim Flashner2017-03-23
| | | | | | | | | | * gnu/packages/maths.scm (scotch)[native-inputs]: Use flex-2.6.1 and not flex.
* | gnu: openblas: Add support for aarch64.Efraim Flashner2017-03-21
|/ | | | | * gnu/packages/maths.scm (openblas)[arguments]: Mark aarch64 as substitutable, build for target ARMv8.
* gnu: Add maxflow.John Darrington2017-03-18
| | | | * gnu/packages/maths.scm (maxflow): New variable.
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