| Commit message (Collapse) | Author | Age |
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* gnu/packages/maths.scm (gnuplot): Update to 5.0.1.
(native-inputs): 'texlive' -> 'texlive-bin'.
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* gnu/packages/maths.scm (slepc): Update to 3.6.2.
[arguments]: Append "/lib" to arpack configure flag. Use 'inputs'
rather than '%build-inputs' in 'configure phase.
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* gnu/packages/maths.scm (petsc): Update to 3.6.2.
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* gnu/packages/maths.scm (mumps): Update to 5.0.1.
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* gnu/packages/aidc.scm (barcode, qrencode),
gnu/packages/bash.scm (bash, bash-completion),
gnu/packages/busybox.scm (busybox),
gnu/packages/cdrom.scm (cdparanoia),
gnu/packages/cmake.scm (cmake),
gnu/packages/conkeror.scm (conkeror),
gnu/packages/cook.scm (cook),
gnu/packages/curl.scm (curl),
gnu/packages/docbook.scm (docbook-xsl),
gnu/packages/enlightenment.scm (enlightenment),
gnu/packages/games.scm (abbaye),
gnu/packages/geeqie.scm (exiv2),
gnu/packages/gimp.scm (gegl),
gnu/packages/gl.scm (glu, freeglut, ftgl),
gnu/packages/glib.scm (glib),
gnu/packages/gnome.scm (orbit2, gconf, geocode-glib),
gnu/packages/gstreamer.scm (gstreamer, gst-plugins-base),
gnu/packages/linux.scm (util-linux),
gnu/packages/lisp.scm (gcl, ecl),
gnu/packages/maths.scm (gnuplot, hdf5),
gnu/packages/ssh.scm (dropbear),
gnu/packages/web.scm (json-c): Remove tabulations and trailing
white spaces or reformat to fit within 80 columns.
* gnu/packages/audio.scm (aubio),
gnu/packages/emacs.scm (emacs-s),
gnu/packages/engineering.scm (geda-gaf),
gnu/packages/games.scm (dosbox),
gnu/packages/gnome.scm (gusb),
gnu/packages/gtk.scm (gtk+),
gnu/packages/guile.scm (guile-wisp),
gnu/packages/hurd.scm (hurd-headers),
gnu/packages/wm.scm (i3-wm): Adjust synopsis or description.
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* gnu/packages/maths.scm (gsl): Update to 2.1.
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* gnu/packages/maths.scm (pspp)[inputs]: Use gtksourceview-2.
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* gnu/packages/maths.scm (wcalc): New variable.
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* gnu/packages/maths.scm (octave): Update to 4.0.0.
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* gnu/packages/maths.scm (glpk): Update to 4.57.
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* gnu/packages/maths.scm (gsl)[arguments]: Enable tests for i686-linux.
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* gnu/packages/maths.scm (gsl): Update to 2.0.
[source]: Remove patches.
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
gnu/packages/patches/gsl-poly-test-fix-pt2.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove patches.
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* gnu/packages/maths.scm (openblas)[arguments]: Make package
substitutable when the system is MIPS.
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* gnu/packages/maths.scm (openblas)[arguments]: Add "TARGET=SICORTEX" to
make-flags when building for MIPS.
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* gnu/packages/maths.scm (openblas): Update to 0.2.15.
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* gnu/packages/maths.scm (units): Update to 2.12.
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* gnu/packages/maths.scm (glpk): Update to 4.56.
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account for cross building.
* gnu/packages/maths.scm (openblas)[arguments]: Make package substitutable
and enable runtime cpu detection only on x86 systems. Take the target
system into account when cross compiling.
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* gnu/packages/maths.scm (flann): New variable.
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* gnu/packages/bioinformatics.scm (bedtools, bowtie, bwa, hisat, samtools,
plink, star): Use 'install-file' instead of 'mkdir-p' + 'copy-file'.
* gnu/packages/check.scm (catch-framework): Likewise.
* gnu/packages/code.scm (global): Likewise.
* gnu/packages/emacs.scm (magit-svn, haskell-mode, emacs-pdf-tools):
Likewise.
* gnu/packages/engineering.scm (fastcap, fasthenry): Likewise.
* gnu/packages/gnuzilla.scm (nss): Likewise.
* gnu/packages/guile.scm (guile-minikanren): Likewise.
* gnu/packages/java.scm (swt): Likewise.
* gnu/packages/make-bootstrap.scm (%static-binaries): Likewise.
* gnu/packages/maths.scm (lpsolve): Likewise.
* gnu/packages/mp3.scm (mpc123): Likewise.
* gnu/packages/ninja.scm (ninja): Likewise.
* gnu/packages/python.scm (python-numpy, python-pyparsing): Likewise.
* gnu/packages/screen.scm (dtach): Likewise.
* gnu/packages/synergy.scm (synergy): Likewise.
* gnu/packages/textutils.scm (utf8proc): Likewise.
* gnu/packages/version-control.scm (git-test-sequence): Likewise.
* gnu/packages/wicd.scm (wicd): Likewise.
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* gnu/packages/maths.scm (pspp)[source]: Update to 0.8.5.
[native-inputs]: Add TEXINFO.
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* gnu/packages/admin.scm, gnu/packages/algebra.scm, gnu/packages/audio.scm,
gnu/packages/backup.scm, gnu/packages/base.scm, gnu/packages/bittorrent.scm,
gnu/packages/code.scm, gnu/packages/compression.scm,
gnu/packages/databases.scm, gnu/packages/enchant.scm,
gnu/packages/firmware.scm, gnu/packages/fonts.scm,
gnu/packages/freedesktop.scm, gnu/packages/games.scm, gnu/packages/gd.scm,
gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gsasl.scm,
gnu/packages/gstreamer.scm, gnu/packages/gtk.scm, gnu/packages/guile.scm,
gnu/packages/haskell.scm, gnu/packages/language.scm,
gnu/packages/lesstif.scm, gnu/packages/libreoffice.scm,
gnu/packages/linux.scm, gnu/packages/llvm.scm, gnu/packages/maths.scm,
gnu/packages/mcrypt.scm, gnu/packages/mit-krb5.scm, gnu/packages/mp3.scm,
gnu/packages/ncdu.scm, gnu/packages/networking.scm, gnu/packages/ntp.scm,
gnu/packages/ocaml.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl.scm, gnu/packages/pretty-print.scm,
gnu/packages/pulseaudio.scm, gnu/packages/python.scm,
gnu/packages/rdesktop.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm,
gnu/packages/slang.scm, gnu/packages/slim.scm, gnu/packages/telephony.scm,
gnu/packages/tls.scm, gnu/packages/tmux.scm, gnu/packages/tre.scm,
gnu/packages/unrtf.scm, gnu/packages/version-control.scm,
gnu/packages/vpn.scm, gnu/packages/web.scm, gnu/packages/wget.scm,
gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xiph.scm:
Fix typos. Trim long lines. Add missing periods in the end of sentences.
Use double spaces between sentences. Remove trailing whitespaces.
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* gnu/packages/curl.scm (curl): Reformat description to avoid a line
beginning with "(" because such lines break font-lock highlighting
in Emacs.
* gnu/packages/flashing-tools.scm (dfu-programmer): Likewise.
* gnu/packages/games.scm (gnugo): Likewise.
* gnu/packages/gnome.scm (json-glib): Likewise.
* gnu/packages/image.scm (jbig2dec): Likewise.
* gnu/packages/maths.scm (units): Likewise.
* gnu/packages/pdf.scm (mupdf): Likewise.
* gnu/packages/web.scm (perl-encode-locale): Likewise.
* gnu/packages/wordnet.scm (wordnet): Likewise.
* gnu/packages/xml.scm (libxml2):Likewise.
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* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables.
* gnu/packages/patches/dealii-p4est-interface.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
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* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi)
(slepc-complex-openmpi): New variables.
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* gnu/packages/maths.scm (arpack-ng-openmpi): New variable.
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* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0.
* gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch.
* gnu-system.am (dist_patch_DATA): Remove it.
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* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi)
(mumps-metis-openmpi): New variables.
* gnu/packages/patches/mumps-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
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* gnu/packages/maths.scm (metis): New variable.
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* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
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* gnu/packages/maths.scm (scalapack): New variable.
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* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps
phase. Install esmumps libraries and headers in 'install phase.
(pt-scotch)[arguments]: Build ptesmumps in 'build phase. Add
make parallelism.
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* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases.
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* gnu/packages/maths.scm (scotch): Update to 6.0.4.
[arguments]: Add -fPIC to CFLAGS.
* gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a
new set of test fixes.
* gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
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* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
"gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
(superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
(octave)[native-inputs]: Likewise.
(gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
"gfortran".
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* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
gnu/packages/patches/gsl-poly-test-fix-pt2.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (gsl)[source]: Add patches.
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* guix/packages.scm (<package>)[location]: Add 'innate' property.
* guix/build-system/gnu.scm (static-package): Remove 'loc' parameter and
'location' field.
* gnu/packages/autotools.scm (autoconf-wrapper): Remove 'location' field.
* gnu/packages/commencement.scm (gnu-make-boot0, diffutils-boot0, gcc-final):
Likewise.
* gnu/packages/cross-base.scm (cross): Likewise.
* gnu/packages/emacs.scm (emacs-no-x, emacs-no-x-toolkit): Likewise.
* gnu/packages/make-bootstrap.scm (tarball-package): Likewise.
* gnu/packages/maths.scm (petsc-complex): Likewise.
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* gnu/packages/maths.scm (wxmaxima): New variable.
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* gnu/packages/patches/maxima-defsystem-mkdir.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (maxima): Update to 5.36.1. Add patch.
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* gnu/packages/maths.scm (lpsolve): New variable.
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* gnu/packages/maths.scm (openblas)[arguments]: Do not pass DYNAMIC_ARCH when
building for MIPS. Also make non-substitutable for MIPS.
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* gnu/packages/maths.scm (openblas): Update to 0.2.14.
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* gnu/packages/maths.scm (octave)[inputs]: Add fftw, fftwf, arpack,
and glu.
[description]: Wrap to 80 columns.
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* gnu/packages/maths.scm (openblas)[arguments]: Add "DYNAMIC_ARCH=1" to
make flags. Remove "#:substitutable? #f".
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* gnu/packages/maths.scm (lapack, gmsh), gnu/packages/ssh.scm (libssh): Remove
unused patchelf from native-inputs.
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* gnu/packages/maths.scm (double-conversion): New variable.
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* gnu/packages/maths.scm (suitesparse): New variable.
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* gnu/packages/maths.scm (openblas): New variable.
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* gnu/packages/avr.scm, gnu/packages/compression.scm,
gnu/packages/curl.scm, gnu/packages/cyrus-sasl.scm,
gnu/packages/databases.scm, gnu/packages/firmware.scm,
gnu/packages/flex.scm, gnu/packages/fontutils.scm,
gnu/packages/gd.scm, gnu/packages/ghostscript.scm,
gnu/packages/gnunet.scm, gnu/packages/graphics.scm,
gnu/packages/hugs.scm, gnu/packages/image.scm,
gnu/packages/linux.scm, gnu/packages/mail.scm,
gnu/packages/maths.scm, gnu/packages/mit-krb5.scm,
gnu/packages/python.scm, gnu/packages/rdf.scm,
gnu/packages/ssh.scm, gnu/packages/tcl.scm,
gnu/packages/xdisorg.scm, gnu/packages/xiph.scm,
gnu/packages/yasm.scm, gnu/packages/zip.scm: Use 'non-copyleft'
instead of 'bsd-style'.
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