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* gnu: blis: Add deprecated aliases.Ludovic Courtès2021-04-12
| | | | | | | Add deprecated aliases for packages removed in the parent commit. * gnu/packages/maths.scm (blis-sandybridge, blis-haswell, blis-knl): New variables.
* gnu: blis: Update to 0.8.1.Philip McGrath2021-04-12
| | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (make-blis): Remove internal function. Inline into ... (bliss): ... this variable. Update to 0.8.1. [native-inputs]: Add "python" and "perl". [arguments]: Adjust 'configure' phase to take advantage of new support for "configuration families" with runtime hardware detection. Select configuration automatically based on target systems, and allow "--blis-config=" in #:configure-flags to override the default. When building for x86_64, include all supported microarchetecture specializations. Add "--enable-verbose-make" configure flag for better build logs. Stop ignoring other flags from #:configure-flags. Remove explicit #:substitutable? argument: the package is now always substitutable. Add (srfi srfi-1) to #:modules. (blis/x86_64): Remove internal macro. (blis-sandybridge): Remove package: included in 'blis'. (blis-haswell): Remove package: included in 'blis'. (blis-knl): Remove package: included in 'blis'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: python-sip: Update to 5.5.0. Add python-sip-4Brendan Tildesley2021-04-09
| | | | | | | | | * gnu/packages/qt.scm (python-sip): Update to 5.5.0. (python-sip-4): New variable. Rename the old python-sip to python-sip-4. (python2-sip): Inherit from python-sip-4. * gnu/packages/maths.scm (veusz)[native-inputs]: Use python-sip-4. * gnu/packages/pdf.scm (python-poppler-qt5): Use python-sip-4. * gnu/packages/geo.scm (qgis)[arguments]: Fix build for python-sip@5.
* gnu: Add scotch and pt-scotch with shared librariesFranck Pérignon2021-04-06
| | | | | | * gnu/packages/maths.scm (scotch-shared, pt-scotch-shared): New variables. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: suitesparse: Update to 5.9.0.Felix Gruber2021-04-05
| | | | | | | * gnu/packages/maths.scm (suitesparse): Update to 5.9.0. [arguments]: Use cc-for-target instead of hard-coding gcc. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: metis: Add 'release-monitoring-url' property.Ludovic Courtès2021-03-29
| | | | * gnu/packages/maths.scm (metis)[properties]: New field.
* gnu: wxmaxima: Update to 21.02.0.Kei Kebreau2021-03-13
| | | | * gnu/packages/maths.scm (wxmaxima): Update to 21.02.0.
* gnu: octave: Update to 6.2.0.Efraim Flashner2021-03-02
| | | | | | * gnu/packages/maths.scm (octave): Update to 6.2.0. [source]: Download tar.xz tarball. [native-inputs]: Remove lzip.
* gnu: slepc: Use HTTPS home page URI.Nicolas Goaziou2021-02-28
| | | | * gnu/packages/maths.scm (slepc)[home-page]: Use HTTPS URI.
* gnu: elpa: Use HTTPS home page URI.Nicolas Goaziou2021-02-28
| | | | * gnu/packages/maths.scm (elpa)[home-page]: Use HTTPS URI.
* gnu: Add HDF5 1.12.0.Gerd Heber2021-02-21
| | | | | | * gnu/packages/maths.scm (hdf5-1.12): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: wxmaxima: Update to 21.01.0.Kei Kebreau2021-02-09
| | | | | * gnu/packages/maths.scm (wxmaxima): Update to 21.01.0. [inputs]: Remove libomp.
* gnu: hdf5: Update to 1.8.22.Eric Bavier2021-02-08
| | | | | | | | | | Fixes CVE-2018-14033, CVE-2018-11206, CVE-2018-13870, CVE-2018-13869, and CVE-2018-17435 * gnu/packages/maths.scm (hdf5-1.8): Update to 1.8.22. * gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch: Delete upstreamed patch. * gnu/local/mk (dist_patch_DATA): Remove it.
* gnu: wxmaxima: Update to 20.12.2.Kei Kebreau2021-01-17
| | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 20.12.2. [arguments]: Remove #:test-target and disable tests. Remove 'pre-check phase. [native-inputs]: Remove xorg-server-for-tests. [inputs]: Add libomp.
* gnu: gnuplot: Update to 5.4.1.Kei Kebreau2021-01-17
| | | | | * gnu/packages/maths.scm (gnuplot): Update to 5.4.1. [arguments]: Set GNUTERM in #:make-flags.
* gnu: suitesparse: Install libraries into /lib.Efraim Flashner2021-01-04
| | | | | | * gnu/packages/maths.scm (suitesparse)[arguments]: Add to configure-flags to install programs built with cmake to use 'lib', not 'lib64.'
* gnu: matio: Update to 1.5.19.Vincent Legoll2020-12-31
| | | | | | * gnu/packages/maths.scm (matio): Update to 1.5.19. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: octave, octave-cli: Update to 6.1.0.Greg Hogan2020-12-22
| | | | | | * gnu/packages/maths.scm (octave, octave-cli): Update to 6.1.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: glpk: Don't build static library.Efraim Flashner2020-12-17
| | | | | * gnu/packages/maths.scm (glpk)[arguments]: Add configure-flag to skip static library.
* gnu: glpk: Update to 5.0.Efraim Flashner2020-12-17
| | | | | | * gnu/packages/maths.scm (glpk): Update to 5.0. (glpk-4.65): New variable. * gnu/packages/algebra.scm (giac)[inputs]: Replace glpk with glpk-4.
* gnu: veusz: Update to 3.3.1.Vinicius Monego2020-12-13
| | | | | | * gnu/packages/maths.scm (veusz): Update to 3.3.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: sleef: Update to 3.5.1.Vinicius Monego2020-12-12
| | | | | | * gnu/packages/maths.scm (sleef): Update to 3.5.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: dealii: Update to 9.2.0.Eric Bavier2020-12-09
| | | | * gnu/packages/maths.scm (dealii): Update to 9.2.0.
* gnu: Add tiny-bignum.Ryan Prior2020-12-08
| | | | | | * gnu/packages/maths.scm (tiny-bignum): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
* gnu: superlu-dist: Update to 6.4.0.Eric Bavier2020-12-05
| | | | | | | * gnu/packages/maths.scm (superlu-dist): Update to 6.4.0 [source]: Use git-fetch, as tarballs are no longer published. * gnu/packages/patches/superlu-dist-awpm-grid.patch: Remove all but the first hunk; they are unnecessary.
* gnu: scotch: Update to 6.1.0Eric Bavier2020-12-05
| | | | * gnu/packages/maths.scm (scotch): Update to 6.1.0.
* gnu: metamath: Update to 0.193.Tobias Geerinckx-Rice2020-12-01
| | | | * gnu/packages/maths.scm (metamath): Update to 0.193.
* gnu: units: Update to 2.21.Tobias Geerinckx-Rice2020-11-17
| | | | * gnu/packages/maths.scm (units): Update to 2.21.
* gnu: z3: Update to 4.8.9.Martin Becze2020-11-16
| | | | | | * gnu/packages/maths.scm (z3): Update to 4.8.9. Signed-off-by: Christopher Baines <mail@cbaines.net>
* gnu: superlu: Update to 5.2.2.Tobias Geerinckx-Rice2020-11-15
| | | | * gnu/packages/maths.scm (superlu): Update to 5.2.2.
* gnu: python-petsc4py: Fix build with python 3.8.Paul Garlick2020-11-11
| | | | | * gnu/packages/maths.scm (python-petsc4py)[source]: Add snippet. [native-inputs]: New field.
* gnu: netcdf-fortran: Update to 4.5.3.Christopher Baines2020-10-26
| | | | | | This allows the package to build with netcdf 4.7.4. * gnu/packages/maths.scm (netcdf-fortran): Update to 4.5.3.
* gnu: netcdf: Update to 4.7.4.Christopher Baines2020-10-26
| | | | | | | | | | | This will fix an issue building qgis. * gnu/packages/maths.scm (netcdf): Update to 4.7.4. [source]: Remove the netcdf-tst_h_par.patch, also change the naming of the source tarball, as the name seems to have changed for recent releases. [inputs]: Update hdf5 and add curl. * gnu/packages/patches/netcdf-tst_h_par.patch: Delete. * gnu/local.mk (dist_patch_DATA): Remove deleted patch.
* gnu: hdf5: Default to 1.10.Ludovic Courtès2020-10-23
| | | | | | | | This is a followup to 593096355501dfd76c2e92b1fbd87f940ab1d1f2. * gnu/packages/maths.scm (hdf5): Change to HDF5-1.10. (hdf-java, hdf-eos5, h5check, netcdf, matio)[inputs]: Use HDF5-1.8. * gnu/packages/java.scm (java-cisd-jhdf5)[inputs]: Likewise.
* gnu: gmsh: Update to 4.6.0.zimoun2020-10-08
| | | | | | | | | | | | Gmsh bundles METIS 5 released with Apache License 2.0 since upstream commit eaff7f6477fe876991615cfa4b5832bd5f12994b. Instead, Gmsh is linked with the package 'metis'. * gnu/packages/maths.scm (gmsh): Update to 4.6.0. (propagated-inputs): Replace 'opencascade-oce' by 'opencascade-occt', add 'metis'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: SuiteSparse: Update to 5.8.1.Greg Hogan2020-10-01
| | | | | | | | | | | | | From 0d8692dfebc6ac4b515c06612ab8da4c898719eb Mon Sep 17 00:00:00 2001 From: Greg Hogan <code@greghogan.com> Date: Tue, 29 Sep 2020 11:54:38 +0000 Subject: [PATCH] gnu: SuiteSparse: Update to 5.8.1. * gnu/packages/maths.scm (suitesparse): Update to 5.8.1. [arguments]: Remove unnecessary flag and use default blas and lapack. [inputs]: Add new dependencies for SLIP_LU component. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Fix package references.Efraim Flashner2020-09-30
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/algebra.scm (iml)[inputs]: Correctly refer to package inputs. * gnu/packages/astronomy.scm (xplanet), * gnu/packages/audio.scm (redkite, libaudec, lv2lint, lv2toweb), * gnu/packages/bioconductor.scm (r-cummerbund), * gnu/packages/chicken.scm (chicken), * gnu/packages/conky.scm (conky), * gnu/packages/cran.scm (r-latex2exp), * gnu/packages/crates-io.scm (rust-rgb), * gnu/packages/databases.scm (mariadb), * gnu/packages/diffoscope.scm (reprotest), * gnu/packages/file-systems.scm (glusterfs), * gnu/packages/finance.scm (electron-cash), * gnu/packages/games.scm (rinutils, ksudoku, kdiamond, kigo), * gnu/packages/geo.scm (grass), * gnu/packages/gnome.scm (libmediaart, gnome-contacts, geoclue), * gnu/packages/gnucash.scm (aqbanking), * gnu/packages/image.scm (mtpaint), * gnu/packages/kde-internet.scm (kopete, ktorrent), * gnu/packages/kde-utils.scm (kmousetool, kmouth, kronometer), * gnu/packages/linphone.scm (liblinphone), * gnu/packages/maths.scm (ppl), * gnu/packages/mercury.scm (mercury-minimal), * gnu/packages/music.scm (bjumblr, bschaffl, lsp-plugins, spectacle-analyzer, helm, tap-lv2, wolf-shaper, shiru-lv2), * gnu/packages/networking.scm (restinio), * gnu/packages/prolog.scm (swi-prolog), * gnu/packages/python-web.scm (gunicorn), * gnu/packages/python-xyz.scm (python-docusign-esign), * gnu/packages/ruby.scm (ruby-cucumber, ruby_version, ruby-addressable), * gnu/packages/sagemath.scm (python-cypari2), * gnu/packages/skarnet.scm (s6-linux-init), * gnu/packages/vpn.scm (sshuttle), * gnu/packages/web.scm (libcyaml), * gnu/packages/xdisorg.scm (kbdd), * gnu/packages/xorg.scm (xpra): Same.
* Revert "gnu: openblas: Update to 0.3.10."Mathieu Othacehe2020-09-18
| | | | | This reverts commit c59e9f0a03241ef3c7b8042054fd54e327f7539a because it triggers too many rebuilds.
* gnu: openblas: Update to 0.3.10.Greg Hogan2020-09-18
| | | | | | | * gnu/packages/maths.scm (openblas): Update to 0.3.10. [source]: Fetch from github. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
* gnu: hdf5: Update to 1.10.7.Eric Bavier2020-09-17
| | | | | | Fixes CVE-2018-13870, CVE-2018-13869 and CVE-2018-17435. * gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.7.
* gnu: metamath: Update to 0.192.B. Wilson2020-09-08
| | | | | | * gnu/packages/maths.scm (metamath): Update to 0.192. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: Add libflame.Efraim Flashner2020-08-27
| | | | * gnu/packages/maths.scm (libflame): New variable.
* gnu: lrslib: Update to 7.1.Andreas Enge2020-08-27
| | | | * gnu/packages/maths.scm (lrslib): Update to 7.1.
* gnu: octave: Remove unneeded 'source' field.Ludovic Courtès2020-08-26
| | | | | * gnu/packages/maths.scm (octave)[source]: Remove. It had been unnecessary since b66741edc954f0a17f1ef567e8d612cac87c7b6a.
* gnu: netcdf-parallel-openmpi: Allow MPI tests to pass.Ludovic Courtès2020-08-26
| | | | | * gnu/packages/maths.scm (netcdf-parallel-openmpi)[arguments]: Add 'mip-setup' phase.
* gnu: hdf5-parallel-openmpi: Update to 1.10.6.Ludovic Courtès2020-08-26
| | | | * gnu/packages/maths.scm (hdf5-parallel-openmpi): Inherit from HDF5-1.10.
* gnu: hdf5: Use 'package/inherit' for variants.Ludovic Courtès2020-08-26
| | | | | * gnu/packages/maths.scm (hdf5-1.10, hdf5-parallel-openmpi): Use 'package/inherit'.
* gnu: hdf5: Distinguish the default hdf5 version.Ludovic Courtès2020-08-26
| | | | | | | * gnu/packages/maths.scm (hdf5): Rename to... (hdf-1.8): ... this. (hdf5-1.10): Adjust accordingly. (hdf5): New variable.
* gnu: wxmaxima: Update to 20.06.6.Kei Kebreau2020-08-16
| | | | | * gnu/packages/maths.scm (wxmaxima): Update to 20.06.6. [arguments]: Add 'patch-doc-path phase.
* gnu: Add veusz.Vinicius Monego2020-08-16
| | | | | | * gnu/packages/maths.scm (veusz): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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