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* Merge branch 'master' into core-updates-frozenMarius Bakke2021-07-29
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | Conflicts: gnu/packages/bioinformatics.scm gnu/packages/cmake.scm gnu/packages/curl.scm gnu/packages/emacs-xyz.scm gnu/packages/gpodder.scm gnu/packages/music.scm gnu/packages/patches/glibc-bootstrap-system.patch gnu/packages/python-xyz.scm gnu/packages/shells.scm gnu/packages/statistics.scm
| * gnu: apache-arrow: Update to 5.0.0.Ricardo Wurmus2021-07-29
| | | | | | | | * gnu/packages/databases.scm (apache-arrow): Update to 5.0.0.
| * gnu: python-pyarrow: Fix parquet support.Ricardo Wurmus2021-07-28
| | | | | | | | | | | | | | | | Co-authored-by: Phil Beadling <phil@beadling.co.uk>. * gnu/packages/databases.scm (python-pyarrow)[arguments]: Add phases patch-cmake-variables, patch-parquet-library, and set-PYARROW_WITH_PARQUET. [propagated-inputs]: Add "include" output of apache-arrow package.
| * gnu: Add sequeler.Alexandre Hannud Abdo2021-07-20
| | | | | | | | | | | | * gnu/packages/databases.scm (sequeler): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* | Merge branch 'master' into core-updatesLudovic Courtès2021-07-18
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| * gnu: perl-sql-splitstatement: Update to 1.00023.Tobias Geerinckx-Rice2021-07-02
| | | | | | | | | | * gnu/packages/databases.scm (perl-sql-splitstatement): Update to 1.00023. [native-inputs]: Add perl-test-differences and perl-test-script.
| * gnu: perl-db-file: Update to 1.856.Tobias Geerinckx-Rice2021-07-02
| | | | | | | | * gnu/packages/databases.scm (perl-db-file): Update to 1.856.
| * gnu: virtuoso-ose: Update to 7.2.6.Tobias Geerinckx-Rice2021-06-30
| | | | | | | | | | | | * gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.6. [source]: Get it from SourceForge. [inputs]: Use the default OpenSSL version.
| * gnu: python2-sqlparse: Remove package.zimoun2021-06-29
| | | | | | | | | | | | * gnu/packages/databases.scm (python2-sqlparse): Remove variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: mariadb-connector-c: Update to 3.1.13.Tobias Geerinckx-Rice2021-06-25
| | | | | | | | * gnu/packages/databases.scm (mariadb-connector-c): Update to 3.1.13.
* | Merge branch 'master' into core-updatesTobias Geerinckx-Rice2021-06-23
|\| | | | | | | | | | | | | | | Conflicts: gnu/packages/cups.scm gnu/packages/python-web.scm gnu/packages/web.scm guix/build/maven/pom.scm
| * gnu: apache-arrow: Update to 4.0.1.Ricardo Wurmus2021-06-21
| | | | | | | | | | | | | | * gnu/packages/databases.scm (apache-arrow): Update to 4.0.1. [arguments]: Remove trailing boolean; ensure that xsimd is not downloaded and built anew. [inputs]: Add xsimd.
* | Merge branch 'master' into core-updatesMarius Bakke2021-06-19
|\| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Note: this merge actually changes the 'curl' and 'python-attrs' derivations, as part of solving caf4a7a2770ef4d05a6e18f40d602e51da749ddc and 12964df69a99de6190422c752fef65ef813f3b6b respectively. 4604d43c0e (gnu: gnutls@3.6.16: Fix cross-compilation.) was ignored because it cannot currently be tested. Conflicts: gnu/local.mk gnu/packages/aidc.scm gnu/packages/boost.scm gnu/packages/curl.scm gnu/packages/nettle.scm gnu/packages/networking.scm gnu/packages/python-xyz.scm gnu/packages/tls.scm
| * gnu: Add nanodbc-for-irods.Ricardo Wurmus2021-06-14
| | | | | | | | * gnu/packages/databases.scm (nanodbc-for-irods): New variable.
| * gnu: python2-orator: Remove package.zimoun2021-06-08
| | | | | | | | | | | | | | * gnu/packages/database.scm (python2-orator): Remove variable. (python-orator)[properties]: Remove field. Signed-off-by: Leo Famulari <leo@famulari.name>
* | gnu: postgresql: Remove replacement.Marius Bakke2021-06-13
| | | | | | | | | | | | * gnu/packages/databases.scm (postgresql-13): Update to 13.3. [replacement]: Remove. (postgresql-13.3): Remove variable.
* | Merge branch 'master' into core-updatesMarius Bakke2021-06-06
|\| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Conflicts: gnu/local.mk gnu/packages/algebra.scm gnu/packages/bioinformatics.scm gnu/packages/curl.scm gnu/packages/docbook.scm gnu/packages/emacs-xyz.scm gnu/packages/maths.scm gnu/packages/plotutils.scm gnu/packages/python-web.scm gnu/packages/python-xyz.scm gnu/packages/radio.scm gnu/packages/readline.scm gnu/packages/tls.scm gnu/packages/xml.scm gnu/packages/xorg.scm
| * gnu: redis: Update to 6.2.4 [security fixes].Simon Streit2021-06-02
| | | | | | | | | | | | | | | | | | Fixes CVE-2021-29477. * gnu/packages/databases.scm (redis): Update to 6.2.4. [arguments]: Disable the 'integration/failover' test. Signed-off-by: Leo Famulari <leo@famulari.name>
| * gnu: lmdb: Update to 0.9.29.Tobias Geerinckx-Rice2021-05-23
| | | | | | | | * gnu/packages/databases.scm (lmdb): Update to 0.9.29.
* | Merge branch 'master' into core-updatesMarius Bakke2021-05-22
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| * gnu: perl-dbd-pg: Update to 3.14.2.Efraim Flashner2021-05-19
| | | | | | | | * gnu/packages/databases.scm (perl-dbd-pg): Update to 3.14.2.
| * gnu: PostgreSQL 9: Update to 9.6.22 [fixes CVE-2021-{32027,32028,32029}].Leo Famulari2021-05-17
| | | | | | | | * gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.22.
| * gnu: PostgreSQL 10: Update to 10.17 [fixes CVE-2021-{32027,32028,32029}].Leo Famulari2021-05-17
| | | | | | | | * gnu/packages/databases.scm (postgresql-10): Update to 10.17.
| * gnu: PostgreSQL 11: Update to 11.12 [fixes CVE-2021-{32027,32028,32029}].Leo Famulari2021-05-17
| | | | | | | | * gnu/packages/databases.scm (postgresql-11): Update to 11.12.
| * gnu: PostgreSQL: Update to 13.3 [fixes CVE-2021-{32027,32028,32029}].Leo Famulari2021-05-17
| | | | | | | | | | | | * gnu/packages/databases.scm (postgresql-13)[replacement]: Use postgresql-13.3. (postgresql-13.2): Replace with ... (postgresql-13.3): ... new variable.
* | Merge branch 'master' into core-updatesLudovic Courtès2021-05-15
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| * gnu: Add python-sqlalchemy-stubs.BonfaceKilz2021-05-12
| | | | | | | | | | | | * gnu/packages/databases.scm (python-sqlalchemy-stubs): New variable. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
* | gnu: CMake: Update to 3.20.2.Marius Bakke2021-05-09
| | | | | | | | | | | | | | | | | | | | * gnu/packages/cmake.scm (%common-disabled-tests): Don't disable BootstrapTest. (cmake-bootstrap): Update to 3.20.2. [source](modules, snippet): Move from here ... (cmake-minimal)[source]: ... to here. * gnu/packages/patches/mariadb-cmake-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/databases.scm (mariadb)[source](patches): Add it.
* | gnu: PostgreSQL: Remove replacement package.Marius Bakke2021-05-09
| | | | | | | | | | | | * gnu/packages/databases.scm (postgresql-13): Update to 13.2. [replacement]: Remove. (postgresql-13.2): Remove variable.
* | gnu: MariaDB: Incorporate grafted changes.Marius Bakke2021-05-09
| | | | | | | | | | | | * gnu/packages/databases.scm (mariadb)[replacement]: Remove. [source](patches): New field. (mariadb/fixed): Remove variable.
* | Merge branch 'master' into core-updatesMarius Bakke2021-05-09
|\| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Conflicts: gnu/local.mk gnu/packages/bioinformatics.scm gnu/packages/django.scm gnu/packages/gtk.scm gnu/packages/llvm.scm gnu/packages/python-web.scm gnu/packages/python.scm gnu/packages/tex.scm guix/build-system/asdf.scm guix/build/emacs-build-system.scm guix/profiles.scm
| * gnu: python-sqlparse: Remove unnecessary runtime dependencies.Marius Bakke2021-05-05
| | | | | | | | | | * gnu/packages/databases.scm (python-sqlparse)[arguments]: Override 'wrap' phase.
| * gnu: python-sqlparse: Update to 0.4.1.Marius Bakke2021-05-05
| | | | | | | | * gnu/packages/databases.scm (python-sqlparse): Update to 0.4.1.
| * gnu: soci: Update to 4.0.2.Tobias Geerinckx-Rice2021-05-01
| | | | | | | | * gnu/packages/databases.scm (soci): Update to 4.0.2.
| * gnu: Add ruby-redis.Pjotr Prins2021-04-26
| | | | | | | | | | | | * gnu/packages/databases.scm (ruby-redis): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| * gnu: nanodbc: Build shared libraries.Ricardo Wurmus2021-04-23
| | | | | | | | * gnu/packages/databases.scm (nanodbc)[arguments]: Build shared libraries.
| * gnu: Add nanodbc.Ricardo Wurmus2021-04-20
| | | | | | | | * gnu/packages/databases.scm (nanodbc): New variable.
| * gnu: freetds: Update to 1.2.20.Tobias Geerinckx-Rice2021-04-19
| | | | | | | | * gnu/packages/databases.scm (freetds): Update to 1.2.20.
* | Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner2021-04-16
|\| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Conflicts: gnu/local.mk gnu/packages/boost.scm gnu/packages/chez.scm gnu/packages/compression.scm gnu/packages/crates-io.scm gnu/packages/docbook.scm gnu/packages/engineering.scm gnu/packages/gcc.scm gnu/packages/gl.scm gnu/packages/gtk.scm gnu/packages/nettle.scm gnu/packages/python-check.scm gnu/packages/python-xyz.scm gnu/packages/radio.scm gnu/packages/rust.scm gnu/packages/sqlite.scm guix/build-system/node.scm
| * gnu: freetds: Update to 1.2.19.Tobias Geerinckx-Rice2021-04-11
| | | | | | | | * gnu/packages/databases.scm (freetds): Update to 1.2.19.
| * gnu: Add galera.methuselah-02021-04-08
| | | | | | | | | | | | * gnu/packages/databases.scm (galera): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: python-tortoise-orm: Fix dependencies.Lars-Dominik Braun2021-04-06
| | | | | | | | | | | | * gnu/packages/databases.scm (python-tortoise-orm) [propagated-inputs]: Add missing dependency. [arguments]: Relax pytz version requirement, remove iso8601 requirement.
| * gnu: soci: Propagate inputs.Raghav Gururajan2021-03-27
| | | | | | | | | | | | | | * gnu/packages/databases.scm (soci)[inputs]: Move to... [propagated-inputs]: ... here. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
| * gnu: mariadb: Fix CVE-2021-27928.Léo Le Bouter2021-03-26
| | | | | | | | | | | | | | * gnu/packages/patches/mariadb-CVE-2021-27928.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/databases.scm (mariadb/fixed): New variable. Apply patch. (mariadb)[replacement]: Graft.
* | Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner2021-03-24
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| * gnu: python2-rq: Remove package.zimoun2021-03-23
| | | | | | | | | | | | * gnu/packages/databases.scm (python2-rq): Delete. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
| * gnu: libmemcached: Disable test suite.Maxim Cournoyer2021-03-16
| | | | | | | | | | | | | | | | | | | | | | * gnu/packages/databases.scm (libmemcached): Disable test suite. Removing trailing #t. [phases]{fix-configure}: Remove useless group in pattern. {disable-failing-tests}: Remove phase. {build-and-install-html-doc}: Order after the build phase. [home-page]: Please 'guix lint'. Reported-by: Simon Tournier <zimon.toutoune@gmail.com>
| * gnu: Remove MongoDB.Léo Le Bouter2021-03-16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | mongodb 3.4.10 has unpatched CVEs and mongodb 3.4.24 has some files in the release tarball under the SSPL, therefore we cannot provide mongodb while upholding to good security standards. It turns out feff80cec3c97a3df2c20d300be12d67f79d4f22 was right since while the main license file wasnt altered to SSPL, some files in the tree contain SSPL headers. * gnu/packages/databases.scm (go-gopkg.in-mgo.v2): Remove. * gnu/packages/databases.scm (mongo-tools): Remove. * doc/guix.texi (mongodb-service-type): Remove. * gnu/tests/databases.scm (%test-mongodb, %mongodb-os, run-mongodb-test): Remove. * gnu/services/databases.scm (mongodb-configuration, mongodb-configuration?, mongodb-configuration-mongodb, mongodb-configuration-config-file, mongodb-configuration-data-directory, mongodb-service-type, %default-mongodb-configuration-file, %mongodb-accounts, mongodb-activation, mongodb-shepherd-service): Remove. * gnu/packages/databases.scm (mongodb): Remove.
| * gnu: mongodb: Update comment about package license.Efraim Flashner2021-03-11
| | | | | | | | | | | | * gnu/packages/databases.scm (mongodb): Adjust the comment about the licensing status of the package, there are still older branches receiving updates under the AGPL license.
| * Revert "Revert "gnu: mongodb: Update to 3.4.24 [security fixes].""Efraim Flashner2021-03-11
| | | | | | | | | | | | | | This reverts commit feff80cec3c97a3df2c20d300be12d67f79d4f22. I was mistaken, there are still branches of mongodb which are still licensed under the AGPL3