| Commit message (Collapse) | Author | Age |
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* gnu/packages/databases.scm (postgresql): Update to 10.2.
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The hash of the source for this package is wrong. Most probably because the
source was changed from a tarball to a git repository without updating the
hash. Fixing this seems to break the check phase, so I rewrote that as well,
making changes to the build and install phases as needed.
* gnu/packages/databases.scm (mongo-tools)[source]: Update the hash value.
[arguments]: Remove the different unpack path, as this isn't necessary when
using the git repository as a source. Move the list of tools to make it
accessible from multiple phases. Rewrite the build phase, getting it to
install the tools in to the location the tests seem to expect to find
them. Replace the check phase to run the tests for each tool
individually. Add an install phase to install the tools, now that go install
is not being run in the build phase.
[native-inputs]: Add go-github.com-smartystreets-goconvey as a native-input
as this is required for running the tests.
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* gnu/packages/databases.scm (mongo-tools): New variable.
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* gnu/packages/databases.scm (go-gopkg.in-mgo.v2): New variable.
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* gnu/packages/databases.scm (4store)[source, home-page]: Update URI.
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* gnu/packages/databases.scm (mongodb): Replace tabs with spaces.
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* gnu/packages/databases.scm (mysql): Update to 5.7.21.
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Now that the build system does wrapping automatically, it can be removed from
the packages that do it manually.
* gnu/packages/databases.scm (es-dump-restore)[arguments]: Remove #:phases.
* gnu/packages/ruby.scm (ruby-redcloth)[arguments]: Remove #:phases.
(ruby-httpclient)[arguments]: Remove 'wrap-bin-httpclient from the modified
phases.
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* guix/build/ruby-build-system.scm (install): Install gems to the vendor
directory, rather than the GEM_HOME. The vendor directory does not include
the version of ruby used to install the gem in the path, which makes it
easier to add it to the GEM_PATH for all versions of ruby to use.
(gem-home): Remove procedure.
* gnu/packages/ruby.scm (ruby, ruby-2.1)[native-search-paths]: Switch to
lib/ruby/vendor_ruby.
(ruby-1.8)[native-search-paths]: Remove native-search-paths.
(gem-directory): Remove procedure.
(ruby-ansi, ruby-ae)[arguments]: Remove use of gem-directory.
(ruby-metaclass, ruby-instantiator, ruby-introspection, ruby-mocha,
ruby-nokogiri, ruby-minitest-tu-shim, ruby-redcloth)[arguments]: Remove use
of gem-home.
(ruby-git, ruby-httpclient)[arguments]: Remove use of GEM_HOME.
* gnu/packages/databases.scm (es-dump-restore)[arguments]: Remove use of
GEM_HOME.
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* gnu/package/databases.scm (guile-wiredtiger): Update to 0.6.3.
[arguments]: Enable tests; disable parallel tests; remove
'remove-bundled-dependencies' phase.
[synopsis, description]: Improve them.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
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Previously the mongodb dbtests and unittests were only built, and not actually
run.
* gnu/packages/databases.scm (mongodb)[native-inputs]: Add python2-minimal,
python2-pymongo and python2-pyyaml for running the resmoke.py program, and
add tzdata as some tests fail without this.
[arguments]: Run the tests through the resmoke.py script in the check phase,
set TZDIR as a couple of tests seem to depend on this, add a comment about
the resource requirements of the tests, as they require a large amount of
disk space, and disable the async_stream_test, as it seems to hang.
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WiredTiger is used by MongoDB, and it seems to require it to be built with
builtin support for snappy compression.
* gnu/packages/databases.scm (wiredtiger)[arguments]: Replace --enable-zlib
and --enable-snappy with --with-builtins=snappy,zlib.
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* gnu/packages/databases.scm (python-sqlalchemy-utils): Update to 0.32.21.
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* gnu/packages/databases.scm (python-sadisplay): Update to 0.4.8.
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* gnu/packages/check.scm (python-pytest-capturelog)[home-page]: Likewise.
* gnu/packages/databases.scm (python-alembic)[home-page]: Likewise.
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* gnu/packages/databases.scm (python-redis): Update to 2.10.6.
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* gnu/packages/databases.scm (python-alembic): Update to 0.9.6.
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This is probably necessary to get the MongoDB package in Guix to successfully
use the Guix wiredtiger package, as MongoDB it uses wiredtiger with snappy by
default.
* gnu/packages/databases.scm (wiredtiger)[arguments]: Add --enable-snappy to
#:configure-flags.
[inputs]: Add snappy.
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* gnu/packages/databases.scm (mariadb): Update to 10.1.29.
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* gnu/packages/databases.scm (perl-sql-abstract)[source]: Update source uri.
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* gnu/packages/databases.scm (perl-dbd-pg): Update to 3.7.0
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* gnu/packages/databases.scm (perl-sql-abstract): Update to 1.84
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* gnu/packages/databases.scm (perl-dbix-class-schema-loader): Update to
0.07047
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* gnu/packages/databases.scm (perl-dbi): Update to 1.637
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* gnu/packages/databases.scm (mongodb): Switch to scons-build-system.
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* gnu/packages/databases.scm (mongodb)[source]: Add snippet to remove
some of the bundled sources.
[input]: Remove unused boost input.
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* gnu/packages/databases.scm (mongodb)[inputs]: Add wiredtiger on
64-bit systems.
[arguments]: When using wiredtiger, use system wiredtiger.
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* gnu/packages/databases.scm (mongodb)[arguments]: Add a configure-flag
to build without wiredtiger support on 32-bit systems.
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* gnu/packages/databases.scm (mongodb): Update to 3.4.10.
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* gnu/packages/databases.scm (python-pyodbc, python2-pyodbc): New variables.
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* gnu/packages/python.scm (python-ccm, python2-ccm, python2-pysqlite,
python-sqlalchemy, python2-sqlalchemy, python-sqlalchemy-utils,
python2-sqlalchemy-utils, python-alembic, python2-alembic,
python-pickleshare, python2-pickleshare, python-apsw, python2-apsw,
python2-neo4j-driver, python2-py2neo, python-psycopg2, python2-psycopg2,
python-sadisplay, python2-sadisplay, python-mysqlclient,
python2-mysqlclient, python-hiredis, python2-hiredis, python-fakeredis,
python2-fakeredis, python-redis, python2-redis, python-rq, python2-rq,
python-trollius-redis, python2-trollius-redis, python-sqlparse,
python2-sqlparse, python-sql, python2-sql): Move from here...
* gnu/packages/databases.scm: ...to here.
* gnu/packages/tryton.scm,
gnu/packages/python-web.scm,
gnu/packages/nutrition.scm,
gnu/packages/medical.scm: Adjust accordingly.
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* gnu/packages/databases.scm (guile-wiredtiger): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/perl.scm (perl-test2-bundle-extended,
perl-test2-plugin-nowarnings, perl-test-base, perl-test-class,
perl-test-class-most, perl-test-cleannamespaces, perl-test-command,
perl-test-cpan-meta, perl-test-cpan-meta-json, perl-test-deep,
perl-test-differences, perl-test-directory, perl-test-eol,
perl-test-exception, perl-test-fatal, perl-test-file-sharedir-dist,
perl-test-files, perl-test-harness, perl-test-leaktrace,
perl-test-longstring, perl-test-manifest, perl-test-memory-cycle,
perl-test-mockobject, perl-test-mocktime, perl-test-most, perl-test-needs,
perl-test-notabs, perl-test-nowarnings, perl-test-number-delta,
perl-test-output, perl-test-pod, perl-test-pod-coverage, perl-test-requires,
perl-test-script, perl-test-sharedfork, perl-test-simple, perl-test-taint,
perl-test-tester, perl-test-trap, perl-test-utf8, perl-test-warn,
perl-test-warnings, perl-test-without-module, perl-test-writevariants,
perl-test-yaml, perl-test-trailingspace): Move variables to ...
* gnu/packages/perl-check.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/admin.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/crypto.scm,
gnu/packages/databases.scm,
gnu/packages/glib.scm,
gnu/packages/gnupg.scm,
gnu/packages/image-viewers.scm,
gnu/packages/language.scm,
gnu/packages/networking.scm,
gnu/packages/package-management.scm,
gnu/packages/perl.scm,
gnu/packages/terminals.scm,
gnu/packages/tex.scm,
gnu/packages/version-control.scm,
gnu/packages/web.scm,
gnu/packages/xml.scm,
gnu/packages/xorg.scm: Use perl-check module.
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This fixes CVE-2017-12172, CVE-2017-15098, CVE-2017-15099.
* gnu/packages/databases.scm (postgresql@9.6): Update to 9.6.6.
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Fixes CVE-2017-12172, CVE-2017-15098 and CVE-2017-15099.
* gnu/packages/databases.scm (postgresql): Update to 10.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/databases.scm (r-rmysql): New variable.
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* gnu/packages/databases.scm (redis): Update to 4.0.2.
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* gnu/packages/databases.scm (sqlite-with-fts3): New variable.
Co-authored-by: Pierre Langlois <pierre.langlois@gmx.com>
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* gnu/packages/databases.scm (python-lmdb): Update to 0.93.
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* gnu/packages/databases.scm (python-peewee): Update to 2.10.2.
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* gnu/packages/databases.scm (mysql): Update to 5.7.20.
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* gnu/packages/databases.scm (postgresql@9.6): New variable.
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* gnu/packages/databases.scm (bdb): Update to 6.2.32.
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* gnu/packages/admin.scm (mingetty, clusterssh, wpa-supplicant-minimal,
wpa-supplicant, wakelan, acpica, tree, direvent, dstat)[arguments]: Use
'modify-phases' syntax.
* gnu/packages/algebra.scm (arb)[arguments]: Likewise.
* gnu/packages/apr.scm (apr-util)[arguments]: Likewise.
* gnu/packages/audio.scm (clalsadrv, fluidsynth, faad2, lv2-mda-piano,
lv2-mda-epiano, timidity++, vamp, soundtouch, portaudio, rsound,
zita-convolver, zita-alsa-pcmi)[arguments]: Likewise.
* gnu/packages/backup.scm (rdup, btar)[arguments]: Likewise.
* gnu/packages/bioinformatics.scm (bedops, bwa, crossmap, express,
flexbar, grit, hisat, ngs-sdk, subread)[arguments]: Likewise.
* gnu/packages/bittorrent.scm (transmission)[arguments]: Likewise.
* gnu/packages/cdrom.scm (cd-discid)[arguments]: Likewise.
* gnu/packages/compression.scm (sharutils)[arguments]: Likewise.
* gnu/packages/conky.scm (conky)[arguments]: Likewise.
* gnu/packages/databases.scm (bdb, bdb-5.3)[arguments]: Likewise.
* gnu/packages/debug.scm (delta, c-reduce)[arguments]: Likewise.
* gnu/packages/display-managers.scm (slim)[arguments]: Likewise.
* gnu/packages/dns.scm (dnsmasq)[arguments]: Likewise.
* gnu/packages/emacs.scm (geiser, emacs-wget, bbdb)[arguments]: Likewise.
* gnu/packages/engineering.scm (pcb)[arguments]: Likewise.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Likewise.
* gnu/packages/flashing-tools.scm (flashrom)[arguments]: Likewise.
* gnu/packages/fltk.scm (fltk)[arguments]: Likewise.
* gnu/packages/freedesktop.scm (python-pyxdg)[arguments]: Likewise.
* gnu/packages/gd.scm (perl-gd)[arguments]: Likewise.
* gnu/packages/gkrellm.scm (gkrellm)[arguments]: Likewise.
* gnu/packages/glib.scm (glibmm)[arguments]: Likewise.
* gnu/packages/gl.scm (glew)[arguments]: Likewise.
* gnu/packages/gnome.scm (icon-naming-utils, orbit2, libbonobo, gnome-vfs,
libgnome, libbonoboui, goffice-0.8, dconf)[arguments]: Likewise.
* gnu/packages/gprolog.scm (gprolog)[arguments]: Likewise.
* gnu/packages/gps.scm (gpscorrelate)[arguments]: Likewise.
* gnu/packages/graphics.scm (agg)[arguments]: Likewise.
* gnu/packages/gtk.scm (ganv, girara, gtksourceview-2, guile-present,
python2-pycairo)[arguments]: Likewise.
* gnu/packages/guile.scm (guile-1.8)[arguments]: Likewise.
* gnu/packages/guile-wm.scm (guile-wm)[arguments]: Likewise.
* gnu/packages/hugs.scm (hugs)[arguments]: Likewise.
* gnu/packages/hurd.scm (gnumach-headers, hurd-headers, hurd-minimal)
[arguments]: Likewise.
* gnu/packages/image-viewers.scm (feh, sxiv)[arguments]: Likewise.
* gnu/packages/libcanberra.scm (libcanberra)[arguments]: Likewise.
* gnu/packages/linux.scm (bridge-utils, iw, fuse, unionfs-fuse/static,
lm-sensors, i2c-tools, xsensors, perf, mdadm, libaio, module-init-tools)
[arguments]: Likewise.
* gnu/packages/lisp.scm (ccl)[arguments]: Likewise.
* gnu/packages/lout.scm (lout)[arguments]: Likewise.
* gnu/packages/lua.scm (luajit)[arguments]: Likewise.
* gnu/packages/machine-learning.scm (shogun)[arguments]: Likewise.
* gnu/packages/mail.scm (exim)[arguments]: Likewise.
* gnu/packages/man.scm (man-pages, txt2man)[arguments]: Likewise.
* gnu/packages/maths.scm (lapack, superlu-dist, openlibm, openspecfun)
[arguments]: Likewise.
* gnu/packages/messaging.scm (bitlbee)[arguments]: Likewise.
* gnu/packages/mp3.scm (libmad, id3lib, mp3info)[arguments]: Likewise.
* gnu/packages/music.scm (solfege)[arguments]: Likewise.
* gnu/packages/noweb.scm (noweb)[arguments]: Likewise.
* gnu/packages/patchutils.scm (patchutils, quilt, colordiff)[arguments]:
Likewise.
* gnu/packages/pdf.scm (xpdf, zathura-cb, zathura-ps, zathura-djvu,
zathura-pdf-poppler, zathura, podofo, fbida)[arguments]: Likewise.
* gnu/packages/perl.scm (perl-file-list, perl-test-harness)[arguments]:
Likewise.
* gnu/packages/photo.scm (gphoto2)[arguments]: Likewise.
* gnu/packages/popt.scm (popt)[arguments]: Likewise.
* gnu/packages/pretty-print.scm (source-highlight, astyle)[arguments]:
Likewise.
* gnu/packages/pumpio.scm (pumpa)[arguments]: Likewise.
* gnu/packages/python.scm (python-passlib, python-pycrypto, python2-empy,
python-sqlalchemy, python-docopt)[arguments]: Likewise.
* gnu/packages/rdf.scm (lrdf)[arguments]: Likewise.
* gnu/packages/regex.scm (tre)[arguments]: Likewise.
* gnu/packages/rrdtool.scm (rrdtool)[arguments]: Likewise.
* gnu/packages/ruby.scm (ruby-2.1, ruby-1.8)[arguments]: Likewise.
* gnu/packages/sawfish.scm (sawfish)[arguments]: Likewise.
* gnu/packages/scheme.scm (racket)[arguments]: Likewise.
* gnu/packages/sdl.scm (guile-sdl)[arguments]: Likewise.
* gnu/packages/serveez.scm (serveez)[arguments]: Likewise.
* gnu/packages/skribilo.scm (skribilo)[arguments]: Likewise.
* gnu/packages/smalltalk.scm (smalltalk)[arguments]: Likewise.
* gnu/packages/suckless.scm (dmenu, slock)[arguments]: Likewise.
* gnu/packages/tcl.scm (expect)[arguments]: Likewise.
* gnu/packages/telephony.scm (commoncpp)[arguments]: Likewise.
* gnu/packages/textutils.scm (recode, libgtextutils)[arguments]:
Likewise.
* gnu/packages/time.scm (time)[arguments]: Likewise.
* gnu/packages/tor.scm (privoxy)[arguments]: Likewise.
* gnu/packages/uucp.scm (uucp)[arguments]: Likewise.
* gnu/packages/video.scm (libdvdnav-4)[arguments]: Likewise.
* gnu/packages/web-browsers.scm (lynx)[arguments]: Likewise.
* gnu/packages/web.scm (tinyproxy)[arguments]: Likewise.
* gnu/packages/wicd.scm (wicd)[arguments]: Likewise.
* gnu/packages/wm.scm (bspwm)[arguments]: Likewise.
* gnu/packages/xdisorg.scm (sxhkd, xcape)[arguments]: Likewise.
* gnu/packages/xfce.scm (xfconf)[arguments]: Likewise.
* gnu/packages/xfig.scm (transfig)[arguments]: Likewise.
* gnu/packages/xorg.scm (imake)[arguments]: Likewise.
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* gnu/packages/databases.scm (postgresql): Update to 10.0.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/databases.scm (mongodb): New variable.
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* gnu/packages/databases.scm (virtuoso-ose)[supported-systems]: New field.
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