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* gnu: hmmer: Build reproducibly.•••* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file. * gnu/packages/bioinformatics.scm (hmmer): Use it. Ben J. Woodcroft2017-03-10
* gnu: Add sambamba.•••* gnu/packages/bioinformatics.scm (htslib-for-sambamba, sambamba): New variables. Ricardo Wurmus2017-03-10
* Merge branch 'python-tests'Marius Bakke2017-03-03
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| * gnu: ribodiff: Fix test failure.•••* gnu/packages/bioinformatics.scm (ribodiff)[native-inputs]: Add PYTHON2-MOCK and PYTHON2-NOSE. Marius Bakke2017-02-27
| * gnu: python-dendropy: Fix failing tests.•••* gnu/packages/patches/python-dendropy-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/bioinformatics.scm (python-dendropy)[source]: Add patch. Ricardo Wurmus2017-02-24
| * Merge branch 'master' into python-testsMarius Bakke2017-02-13
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| * \ Merge branch 'master' into python-testsLeo Famulari2017-01-13
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| * | | gnu: pbtranscript-tofu: Disable tests.•••* gnu/packages/bioinformatics.scm (pbtranscript-tofu)[arguments]: Set #:tests? #f. Marius Bakke2016-12-16
| * | | gnu: multiqc: Fix test dependencies.•••* gnu/packages/bioinformatics.scm (multiqc)[native-inputs]: Add python-nose. Marius Bakke2016-12-16
| * | | gnu: idr: Remove explicit wrapper. This is now done implicitly.•••* gnu/packages/bioinformatics.scm (idr)[arguments]: Remove #:phases. Marius Bakke2016-12-16
| * | | gnu: idr: Correct inputs.•••* gnu/packages/bioinformatics.scm (idr)[inputs]: Move everything from here ... [propagated-inputs]: ... to here. Add python-sympy. Marius Bakke2016-12-16
| * | | gnu: idr: Disable tests.•••* gnu/packages/bioinformatics.scm (idr)[arguments]: Set #:tests? #f. Marius Bakke2016-12-16
| * | | gnu: deeptools: Fix test dependency.•••* gnu/packages/bioinformatics.scm (deeptools)[native-inputs]: Add python-nose. Marius Bakke2016-12-16
| * | | gnu: clipper: Fix test dependency.•••* gnu/packages/bioinformatics.scm (clipper)[native-inputs]: Add python2-nose. Marius Bakke2016-12-16
| * | | gnu: python-biom-format: Fix tests.•••* gnu/packages/bioinformatics.scm (python-biom-format, python2-biom-format)[native-inputs]: Add python-nose. Marius Bakke2016-12-14
* | | | gnu: diamond: Update to 0.8.36.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.36. Ben Woodcroft2017-03-02
* | | | gnu: bamtools: Update to 2.4.1.•••* gnu/packages/bioinformatics.scm (bamtools): Update to 2.4.1. Ricardo Wurmus2017-02-28
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* | | gnu: vsearch: Update to 2.4.0.•••* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.0. [source]: Convert most operations in the snippet to patch form and adjust for 2.4.0. * gnu/packages/patches/vsearch-unbundle-cityhash.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft2017-02-09
* | | gnu: r-edger: Add r-statmod to inputs.•••* gnu/packages/bioinformatics.scm (r-edger)[propagated-inputs]: Add r-statmod. Ricardo Wurmus2017-02-01
* | | download: url-fetch/tarball: Make ‘name’ truly optional.•••* guix/download.scm (url-fetch/tarbomb): Fall back to ‘file-name’ if ‘name’ is #f, like the regular ‘url-fetch’ does. * gnu/packages/bioinformatics.scm (muscle)[source]: Remove ‘file-name’. * gnu/packages/engineering.scm (fastcap)[source]: Likewise. * gnu/packages/scheme.scm (scmutils)[source]: Likewise. Tobias Geerinckx-Rice2017-02-01
* | | gnu: Add r-rhdf5.Raoul Jean Pierre Bonnal2017-01-31
* | | gnu: Add r-tximport.Raoul Jean Pierre Bonnal2017-01-31
* | | gnu: Add r-bsgenome-hsapiens-1000genomes-hs37d5.•••* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5): New variable. Roel Janssen2017-01-30
* | | gnu: r-vegan: Update to 2.4-2.•••* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-2. Ben Woodcroft2017-01-21
* | | gnu: diamond: Update to 0.8.34.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.34. Ben Woodcroft2017-01-21
* | | gnu: r-msnid: Expand abbreviation in description.•••* gnu/packages/bioinformatics.scm (r-msnid)[description]: Expand "MS/MS" to "tandem mass spectrometry". Ricardo Wurmus2017-01-20
* | | gnu: r-msnbase: Expand abbreviation in description.•••* gnu/packages/bioinformatics.scm (r-msnbase)[description]: Expand "MS" to "mass spectrometry". Ricardo Wurmus2017-01-20
* | | gnu: multiqc: Add python-nose to inputs.•••* gnu/packages/bioinformatics.scm (multiqc)[propagated-inputs]: Add python-nose. Ricardo Wurmus2017-01-18
* | | gnu: Add r-msnid.•••* gnu/packages/bioinformatics.scm (r-msnid): New variable. Ricardo Wurmus2017-01-17
* | | gnu: Add r-msnbase.•••* gnu/packages/bioinformatics.scm (r-msnbase): New variable. Ricardo Wurmus2017-01-17
* | | gnu: Add r-pcamethods.•••* gnu/packages/bioinformatics.scm (r-pcamethods): New variable. Ricardo Wurmus2017-01-17
* | | gnu: Add r-mzid.•••* gnu/packages/bioinformatics.scm (r-mzid): New variable. Ricardo Wurmus2017-01-17
* | | gnu: Add r-vsn.•••* gnu/packages/bioinformatics.scm (r-vsn): New variable. Ricardo Wurmus2017-01-17
* | | gnu: Add r-affy.•••* gnu/packages/bioinformatics.scm (r-affy): New variable. Ricardo Wurmus2017-01-17
* | | gnu: Add r-affyio.•••* gnu/packages/bioinformatics.scm (r-affyio): New variable. Ricardo Wurmus2017-01-17
* | | gnu: Add r-mzr.•••* gnu/packages/bioinformatics.scm (r-mzr): New variable. Ricardo Wurmus2017-01-17
* | | gnu: Add r-protgenerics.•••* gnu/packages/bioinformatics.scm (r-protgenerics): New variable. Ricardo Wurmus2017-01-17
* | | gnu: Add r-maldiquant.•••* gnu/packages/bioinformatics.scm (r-maldiquant): New variable. Ricardo Wurmus2017-01-17
* | | gnu: Add r-raremetals2.•••* gnu/packages/bioinformatics.scm (r-raremetals2): New variable. Ricardo Wurmus2017-01-17
* | | gnu: Add r-seqminer.•••* gnu/packages/bioinformatics.scm (r-seqminer): New variable. Ricardo Wurmus2017-01-17
* | | gnu: Add ribodiff.•••* gnu/packages/bioinformatics.scm (ribodiff): New variable. Ricardo Wurmus2017-01-17
* | | gnu: Add hisat2.•••* gnu/packages/bioinformatics.scm (hisat2): New variable. Ricardo Wurmus2017-01-17
* | | gnu: Add r-centipede.•••* gnu/packages/bioinformatics.scm (r-centipede): New variable. Ricardo Wurmus2017-01-16
* | | gnu: Add r-sva.•••* gnu/packages/bioinformatics.scm (r-sva): New variable. Raoul Jean Pierre Bonnal2017-01-14
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* | gnu: Add r-txdb-mmusculus-ucsc-mm10-knowngene.•••* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): New variable. Roel Janssen2017-01-12
* | gnu: Add r-copywriter.•••* gnu/packages/bioinformatics.scm (r-copywriter): New variable. Ricardo Wurmus2017-01-06
* | gnu: Add r-copyhelper.•••* gnu/packages/bioinformatics.scm (r-copyhelper): New variable. Ricardo Wurmus2017-01-06
* | gnu: Add r-chipseq.•••* gnu/packages/bioinformatics.scm (r-chipseq): New variable. Ricardo Wurmus2017-01-06
* | gnu: bioruby: Update to 1.5.1.•••* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.1. Ben J Woodcroft2017-01-06
* | gnu: cd-hit: Update to 4.6.6.•••* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.6.6. Ben J Woodcroft2017-01-06
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