| Commit message (Expand) | Author | Age |
|---|
| ... | |
| | * | Merge branch 'master' into python-tests | Marius Bakke | 2017-02-13 |
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| | * \ | Merge branch 'master' into python-tests | Leo Famulari | 2017-01-13 |
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| | * | | | gnu: pbtranscript-tofu: Disable tests.•••* gnu/packages/bioinformatics.scm (pbtranscript-tofu)[arguments]: Set #:tests? #f.
| Marius Bakke | 2016-12-16 |
| | * | | | gnu: multiqc: Fix test dependencies.•••* gnu/packages/bioinformatics.scm (multiqc)[native-inputs]: Add python-nose.
| Marius Bakke | 2016-12-16 |
| | * | | | gnu: idr: Remove explicit wrapper. This is now done implicitly.•••* gnu/packages/bioinformatics.scm (idr)[arguments]: Remove #:phases.
| Marius Bakke | 2016-12-16 |
| | * | | | gnu: idr: Correct inputs.•••* gnu/packages/bioinformatics.scm (idr)[inputs]: Move everything from here ...
[propagated-inputs]: ... to here. Add python-sympy.
| Marius Bakke | 2016-12-16 |
| | * | | | gnu: idr: Disable tests.•••* gnu/packages/bioinformatics.scm (idr)[arguments]: Set #:tests? #f.
| Marius Bakke | 2016-12-16 |
| | * | | | gnu: deeptools: Fix test dependency.•••* gnu/packages/bioinformatics.scm (deeptools)[native-inputs]: Add python-nose.
| Marius Bakke | 2016-12-16 |
| | * | | | gnu: clipper: Fix test dependency.•••* gnu/packages/bioinformatics.scm (clipper)[native-inputs]: Add python2-nose.
| Marius Bakke | 2016-12-16 |
| | * | | | gnu: python-biom-format: Fix tests.•••* gnu/packages/bioinformatics.scm (python-biom-format,
python2-biom-format)[native-inputs]: Add python-nose.
| Marius Bakke | 2016-12-14 |
| * | | | | gnu: diamond: Update to 0.8.36.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.36.
| Ben Woodcroft | 2017-03-02 |
| * | | | | gnu: bamtools: Update to 2.4.1.•••* gnu/packages/bioinformatics.scm (bamtools): Update to 2.4.1.
| Ricardo Wurmus | 2017-02-28 |
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| * | | | gnu: vsearch: Update to 2.4.0.•••* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.0.
[source]: Convert most operations in the snippet to patch form and adjust
for 2.4.0.
* gnu/packages/patches/vsearch-unbundle-cityhash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
| Ben Woodcroft | 2017-02-09 |
| * | | | gnu: r-edger: Add r-statmod to inputs.•••* gnu/packages/bioinformatics.scm (r-edger)[propagated-inputs]: Add r-statmod.
| Ricardo Wurmus | 2017-02-01 |
| * | | | download: url-fetch/tarball: Make ‘name’ truly optional.•••* guix/download.scm (url-fetch/tarbomb): Fall back to ‘file-name’ if
‘name’ is #f, like the regular ‘url-fetch’ does.
* gnu/packages/bioinformatics.scm (muscle)[source]: Remove ‘file-name’.
* gnu/packages/engineering.scm (fastcap)[source]: Likewise.
* gnu/packages/scheme.scm (scmutils)[source]: Likewise.
| Tobias Geerinckx-Rice | 2017-02-01 |
| * | | | gnu: Add r-rhdf5. | Raoul Jean Pierre Bonnal | 2017-01-31 |
| * | | | gnu: Add r-tximport. | Raoul Jean Pierre Bonnal | 2017-01-31 |
| * | | | gnu: Add r-bsgenome-hsapiens-1000genomes-hs37d5.•••* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
New variable.
| Roel Janssen | 2017-01-30 |
| * | | | gnu: r-vegan: Update to 2.4-2.•••* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-2.
| Ben Woodcroft | 2017-01-21 |
| * | | | gnu: diamond: Update to 0.8.34.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.34.
| Ben Woodcroft | 2017-01-21 |
| * | | | gnu: r-msnid: Expand abbreviation in description.•••* gnu/packages/bioinformatics.scm (r-msnid)[description]: Expand "MS/MS"
to "tandem mass spectrometry".
| Ricardo Wurmus | 2017-01-20 |
| * | | | gnu: r-msnbase: Expand abbreviation in description.•••* gnu/packages/bioinformatics.scm (r-msnbase)[description]: Expand "MS"
to "mass spectrometry".
| Ricardo Wurmus | 2017-01-20 |
| * | | | gnu: multiqc: Add python-nose to inputs.•••* gnu/packages/bioinformatics.scm (multiqc)[propagated-inputs]: Add
python-nose.
| Ricardo Wurmus | 2017-01-18 |
| * | | | gnu: Add r-msnid.•••* gnu/packages/bioinformatics.scm (r-msnid): New variable.
| Ricardo Wurmus | 2017-01-17 |
| * | | | gnu: Add r-msnbase.•••* gnu/packages/bioinformatics.scm (r-msnbase): New variable.
| Ricardo Wurmus | 2017-01-17 |
| * | | | gnu: Add r-pcamethods.•••* gnu/packages/bioinformatics.scm (r-pcamethods): New variable.
| Ricardo Wurmus | 2017-01-17 |
| * | | | gnu: Add r-mzid.•••* gnu/packages/bioinformatics.scm (r-mzid): New variable.
| Ricardo Wurmus | 2017-01-17 |
| * | | | gnu: Add r-vsn.•••* gnu/packages/bioinformatics.scm (r-vsn): New variable.
| Ricardo Wurmus | 2017-01-17 |
| * | | | gnu: Add r-affy.•••* gnu/packages/bioinformatics.scm (r-affy): New variable.
| Ricardo Wurmus | 2017-01-17 |
| * | | | gnu: Add r-affyio.•••* gnu/packages/bioinformatics.scm (r-affyio): New variable.
| Ricardo Wurmus | 2017-01-17 |
| * | | | gnu: Add r-mzr.•••* gnu/packages/bioinformatics.scm (r-mzr): New variable.
| Ricardo Wurmus | 2017-01-17 |
| * | | | gnu: Add r-protgenerics.•••* gnu/packages/bioinformatics.scm (r-protgenerics): New variable.
| Ricardo Wurmus | 2017-01-17 |
| * | | | gnu: Add r-maldiquant.•••* gnu/packages/bioinformatics.scm (r-maldiquant): New variable.
| Ricardo Wurmus | 2017-01-17 |
| * | | | gnu: Add r-raremetals2.•••* gnu/packages/bioinformatics.scm (r-raremetals2): New variable.
| Ricardo Wurmus | 2017-01-17 |
| * | | | gnu: Add r-seqminer.•••* gnu/packages/bioinformatics.scm (r-seqminer): New variable.
| Ricardo Wurmus | 2017-01-17 |
| * | | | gnu: Add ribodiff.•••* gnu/packages/bioinformatics.scm (ribodiff): New variable.
| Ricardo Wurmus | 2017-01-17 |
| * | | | gnu: Add hisat2.•••* gnu/packages/bioinformatics.scm (hisat2): New variable.
| Ricardo Wurmus | 2017-01-17 |
| * | | | gnu: Add r-centipede.•••* gnu/packages/bioinformatics.scm (r-centipede): New variable.
| Ricardo Wurmus | 2017-01-16 |
| * | | | gnu: Add r-sva.•••* gnu/packages/bioinformatics.scm (r-sva): New variable.
| Raoul Jean Pierre Bonnal | 2017-01-14 |
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| * | | gnu: Add r-txdb-mmusculus-ucsc-mm10-knowngene.•••* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): New variable.
| Roel Janssen | 2017-01-12 |
| * | | gnu: Add r-copywriter.•••* gnu/packages/bioinformatics.scm (r-copywriter): New variable.
| Ricardo Wurmus | 2017-01-06 |
| * | | gnu: Add r-copyhelper.•••* gnu/packages/bioinformatics.scm (r-copyhelper): New variable.
| Ricardo Wurmus | 2017-01-06 |
| * | | gnu: Add r-chipseq.•••* gnu/packages/bioinformatics.scm (r-chipseq): New variable.
| Ricardo Wurmus | 2017-01-06 |
| * | | gnu: bioruby: Update to 1.5.1.•••* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.1.
| Ben J Woodcroft | 2017-01-06 |
| * | | gnu: cd-hit: Update to 4.6.6.•••* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.6.6.
| Ben J Woodcroft | 2017-01-06 |
| * | | gnu: Use HTTPS for all sourceforge.net home pages.•••* gnu/packages/admin.scm (mingetty, clusterssh)[home-page]: Use HTTPS.
* gnu/packages/audio.scm (libbs2b, soxr)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (bless)[home-page]: Likewise.
* gnu/packages/display-managers.scm (slim)[home-page]: Likewise.
* gnu/packages/games.scm (extremetuxracer)[home-page]: Likewise.
* gnu/packages/ghostscript.scm (gs-fonts)[home-page]: Likewise.
* gnu/packages/haskell.scm (ghc-regex-base, ghc-regex-posix,
ghc-regex-compat)[home-page]: Likewise.
* gnu/packages/image.scm (imlib2)[home-page]: Likewise.
* gnu/packages/libreoffice.scm (librevenge, libcmis, libodfgen, libmwaw)
[home-page]: Likewise.
* gnu/packages/linux.scm (hdparm, acpid, libavc1394, rng-tools)
[home-page]: Likewise.
* gnu/packages/mail.scm (esmtp)[home-page]: Likewise.
* gnu/packages/mp3.scm (ripperx)[home-page]: Likewise.
* gnu/packages/onc-rpc.scm (libtirpc)[home-page]: Likewise.
* gnu/packages/perl.scm (perl-czplib)[home-page]: Likewise.
* gnu/packages/python.scm (python-pyasn1-modules)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (xosd)[home-page]: Likewise.
| Tobias Geerinckx-Rice | 2017-01-04 |
| * | | gnu: r-genomicranges: Update to 1.26.2.•••* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.2.
| Roel Janssen | 2017-01-03 |
| * | | gnu: r-genomeinfodb: Update to 1.10.2.•••* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.2.
| Roel Janssen | 2017-01-03 |
| * | | gnu: python-dendropy: Update to 4.2.0.•••* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.2.0.
[source]: Remove patch.
(python2-dendropy)[source]: Use the same source as python-dendropy.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
| Ben Woodcroft | 2017-01-01 |
| * | | gnu: diamond: Update to 0.8.31.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.31.
| Ben Woodcroft | 2017-01-01 |