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* gnu: scotch: Update to 6.0.5a.Eric Bavier2018-04-26
| | | | | | | | | | * gnu/packages/patches/pt-scotch-build-parallelism.patch: Delete files. * gnu/packages/patches/scotch-build-parallelism.patch, gnu/packages/patches/scotch-graph-diam-64.patch, gnu/packages/patches/scotch-graph-induce-type-64.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/maths.scm (scotch): Update to 6.0.5a. [source](patches): Adjust accordingly.
* gnu: quassel: Update to 0.12.5.Tobias Geerinckx-Rice2018-04-27
| | | | | | | * gnu/packages/irc.scm (quassel): Update to 0.12.5. [source]: Remove patch. * gnu/packages/patches/quassel-fix-tls-check.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: pcmanfm: Update to 1.3.0.Tobias Geerinckx-Rice2018-04-27
| | | | | | | * gnu/packages/lxde.scm (pcmanfm): Update to 1.3.0. [source]: Remove patch. * gnu/packages/patches/pcmanfm-CVE-2017-8934.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: bcftools: Update to 1.8.Roel Janssen2018-04-27
| | | | | | * gnu/packages/bioinformatics.scm (bcftools): Update to 1.8. * gnu/local.mk: Remove patch. * gnu/packages/patches/bcftools-regidx-unsigned-char.patch: Remove file.
* gnu: zsh: Update to 5.5.1.Leo Famulari2018-04-26
| | | | | | | | * gnu/packages/shells.scm (zsh): Update to 5.5.1. [source]: Remove obsolete patches. * gnu/packages/patches/zsh-CVE-2018-7548.patch, gnu/packages/patches/zsh-CVE-2018-7549.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
* gnu: qemu: Update to 2.12.0.Marius Bakke2018-04-24
| | | | | | | * gnu/packages/patches/qemu-CVE-2018-7550.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/virtualization.scm (qemu): Update to 2.12.0. [source](patches): Remove.
* gnu: qemu: Fix CVE-2018-7550.Leo Famulari2018-04-18
| | | | | | * gnu/packages/patches/qemu-CVE-2018-7550.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/virtualization.scm (qemu)[source]: Use it.
* gnu: libmygpo-qt: Update to 1.1.0.Pierre Langlois2018-04-17
| | | | | | | | | | * gnu/packages/music.scm (libmygpo-qt): Update to 1.1.0. [source]: Remove 'patches'. [arguments]: Do not set BUILD_WITH_QT4=OFF, it is the default. * gnu/packages/patches/libmygpo-qt-fix-jsoncreatortest.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: sharutils: Fix CVE-2018-1000097.Marius Bakke2018-04-16
| | | | | | * gnu/packages/patches/sharutils-CVE-2018-1000097.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/compression.scm (sharutils)[source](patches): Use it.
* gnu: mupen64plus-video-z64: Fix glew.h location.Manolis Ragkousis2018-04-15
| | | | | | * gnu/packages/patches/mupen64plus-video-z64-glew-correct-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/emulators.scm (mupen64plus-video-z64)[source]: Use it.
* gnu: htop: Update to 2.2.0.Marius Bakke2018-04-15
| | | | | | | * gnu/packages/patches/htop-fix-process-tree.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/admin.scm (htop): Update to 2.2.0. [source](patches): Remove.
* gnu: Add missing freeimage patch.Efraim Flashner2018-04-13
| | | | | | | This is a follow-up to a5d4c96b8d90b8bb87e07bd6a7be78991db91bc9. * gnu/packages/patches/freeimage-unbundle.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: datamash: Fix tests on ARM systems.Eric Bavier2018-04-12
| | | | | | * gnu/packages/patches/datamash-arm-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/datamash.scm (datamash)[source]: Use it.
* gnu: cool-retro-term: Update to 1.0.1.Eric Bavier2018-04-12
| | | | | | | | | * gnu/packages/terminals.scm (cool-retro-term): Update to 1.0.1. [source]: Programmatically remove fonts. [arguments]: Simplify 'configure phase and use 'invoke'. Add 'install-man phase. 'let*' -> 'let' where possible. * gnu/packages/patches/cool-retro-term-remove-non-free-fonts.patch: Delete. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: llvm, clang: Update to 6.0.0.Marius Bakke2018-04-06
| | | | | | | | | | | | | * gnu/packages/llvm.scm (llvm, clang-runtime, clang): Update to 6.0.0. (clang-from-llvm)(patches): Set to empty list. [arguments]: Adjust substitutions depending on major version. (llvm-3.8, clang-runtime-3.8, clang-3.8): New public variables. (clang-3.7, clang-3.6, clang-3.5)(patches): Add 'clang-3.5-libc-search-path.patch'. (clang-3.9.1)(patches): Add 'clang-3.8-libc-search-path.patch'. * gnu/packages/patches/clang-6.0-libc-search-path.patch: New file. * gnu/packages/patches/clang-libc-search-path.patch: Rename to ... * gnu/packages/patches/clang-3.5-libc-search-path.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu: 4store: Remove preprocessor directive.Roel Janssen2018-04-04
| | | | | | | * gnu/packages/databases.scm (4store): Add patch to remove preprocessor directive. * gnu/packages/patches/4store-unset-preprocessor-directive.patch: New file. * gnu/local.mk: Register patch.
* gnu: Add delly.Roel Janssen2018-03-30
| | | | | | | | * gnu/packages/bioinformatics.scm (delly): New variable. * gnu/packages/patches/delly-use-system-libraries.patch: New file. * gnu/local.mk: Include delly-use-system-libraries.patch. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: mupdf: Fix CVE-2018-{6544,1000051}.Leo Famulari2018-03-27
| | | | | | | * gnu/packages/patches/mupdf-CVE-2018-1000051.patch, gnu/packages/patches/mupdf-CVE-2018-6544.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/pdf.scm (mupdf)[source]: Use them.
* gnu: translate-shell: Update to 0.9.6.7.Oleg Pykhalov2018-03-26
| | | | | | | * gnu/packages/patches/translate-shell-fix-curl-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/dictionaries.scm (translate-shell): Update to 0.9.6.7. [source](patches): Add it. [home-page]: Append slash.
* gnu: hwloc@2: Update to 2.0.1.Ludovic Courtès2018-03-26
| | | | | | | * gnu/packages/mpi.scm (hwloc-2.0): Update to 2.0.1. [source]: Remove 'patches'. * gnu/packages/patches/hwloc-tests-without-sysfs.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu: classpath: Add aarch64-linux support.Efraim Flashner2018-03-26
| | | | | | | * gnu/packages/java.scm (classpath-bootstrap, classpath-0.99)[source]: Add patch. * gnu/packages/patches/classpath-aarch64-support.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: Add pure.Danny Milosavljevic2018-03-25
| | | | | * gnu/packages/pure.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu: links: Update to 2.15.Tobias Geerinckx-Rice2018-03-25
| | | | | | | * gnu/packages/web-browsers.scm (links): Update to 2.15. [source]: Remove patch for fixed CVE. * gnu/packages/patches/links-CVE-2017-11114.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Add lyx.Danny Milosavljevic2018-03-22
| | | | | | * gnu/packages/patches/lyx-2.2.3-fix-test.patch: New file. * gnu/local.mk: Add it. * gnu/packages/tex.scm (lyx): New variable.
* gnu: shepherd: Update to 0.4.0.Ludovic Courtès2018-03-22
| | | | | | | | | * gnu/packages/admin.scm (shepherd): Update to 0.4.0. Remove patches. * gnu/packages/patches/shepherd-close-fds.patch, gnu/packages/patches/shepherd-herd-status-sorted.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/services/admin.scm (%default-rotations): Remove /var/log/shepherd.log.
* Merge branch 'staging'Marius Bakke2018-03-20
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| * Merge branch 'master' into stagingMarius Bakke2018-03-18
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| * \ Merge branch 'staging-next' into stagingMarius Bakke2018-03-12
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| | * | gnu: giflib: Make "reallocarray" private, solve glibc@2.26 conflict.Hartmut Goebel2018-03-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Rename the function and move the declaration from gif_lib.h to gif_lib_private.h to solve conflicts when some .c-file #includes both stdlib.h and gif_lib.h. See also https://sourceforge.net/p/giflib/bugs/110/ * gnu/packages/patches/giflib-make-reallocarray-private.patch: New file * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/image.scm(giflib)[source](patches): New field.
| * | | Merge branch 'master' into stagingMarius Bakke2018-03-08
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| * | | gnu: gnome-todo: Fix compatibility with libical >= 3.0.Marius Bakke2018-03-07
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/gnome-todo-libical-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gnome.scm (gnome-todo)[source](patches): Use it.
| * | | Merge branch 'master' into stagingLeo Famulari2018-03-06
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| * \ \ \ Merge branch 'master' into stagingMarius Bakke2018-03-01
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| * | | | | gnu: json-glib: Fix 32-bit test failures.Marius Bakke2018-02-25
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/json-glib-fix-tests-32bit.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gnome.scm (json-glib)[source](patches): New field.
| * | | | | Merge branch 'master' into stagingMarius Bakke2018-02-24
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| * \ \ \ \ \ Merge branch 'master' into stagingMarius Bakke2018-02-20
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| * | | | | | | gnu: gtk+@2: Update to 2.24.32.Marius Bakke2018-02-20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/gtk2-fix-failing-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/gtk.scm (gtk+-2): Update to 2.24.32. [source]: Remove 'gtk2-fix-failing-test.patch'.
* | | | | | | | gnu: libtirpc: Update to 1.0.3.Tobias Geerinckx-Rice2018-03-19
| |_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/onc-rpc.scm (libtirpc): Update to 1.0.3. [source]: Remove patch. * gnu/packages/patches/libtirpc-missing-headers.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* | | | | | | gnu: Add terraform-docs.Christopher Baines2018-03-17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/terraform.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* | | | | | | gnu: java-simple-xml: Fix java8 test failures.Gábor Boskovits2018-03-18
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/javas-simple-xml-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/java.scm (java-simple-xml)[source](patches): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | | | | | | gnu: util-linux: Fix CVE-2018-7738.Leo Famulari2018-03-16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/util-linux-CVE-2018-7738.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/linux.scm (util-linux)[replacement]: New field. (util-linux/fixed): New variable.
* | | | | | | gnu: shadow: Fix CVE-2018-7169.Leo Famulari2018-03-15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/shadow-CVE-2018-7169.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/admin.scm (shadow)[source]: Use it.
* | | | | | | gnu: Add ada.scm to GNU_SYSTEM_MODULES.Ricardo Wurmus2018-03-14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This is a follow-up to commit ebd43a2a45f9ac0ce702ef5810eddafd0830db5f. * gnu/local.mk (GNU_SYSTEM_MODULES): Add ada.scm.
* | | | | | | gnu: Add debian-archive-keyring.Efraim Flashner2018-03-12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/debian.scm (debian-archive-keyring): New variable. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* | | | | | | gnu: lrzip: Fix CVE-2017-8842.Tobias Geerinckx-Rice2018-03-12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/compression.scm (lrzip)[source]: Add patch. * gnu/packages/patches/lrzip-CVE-2017-8842.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* | | | | | | gnu: java-jeromq: Fix tests.Gábor Boskovits2018-03-11
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/java-jeromq-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/java.scm (java-jeromq)[source](patches): Add it. [arguments](#test-exclude): Disable more failing tests.
* | | | | | | gnu: zsh: Fix CVE-2018-{7548,7549}.Leo Famulari2018-03-10
| |_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/zsh-CVE-2018-7548.patch, gnu/packages/patches/zsh-CVE-2018-7549.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/shells.scm (zsh)[source]: Use them.
* | | | | | gnu: Add maven-resolver-api.Julien Lepiller2018-03-06
| |_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maven.scm: New file. (maven-resolver-api): New variable. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* | | | | gnu: ceph: Update to 12.2.4.Marius Bakke2018-03-04
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust to upstream changes. * gnu/packages/patches/ceph-disable-unittest-throttle.patch: Delete file. * gnu/packages/patches/ceph-rocksdb-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/storage.scm (ceph): Update to 12.2.4. [source](patches): Adjust. [arguments]: Add "-DWITH_BABELTRACE=OFF" in #:configure-flags. Build with CMAKE-3.11. Adjust file substitutions. Wrap 'ceph' executable. [native-inputs]: Add GPERF. [inputs]: Replace BOOST with BOOST-1.66. Add PYTHON2-PRETTYTABLE.
* | | | | gnu: antlr3-3.3: Fix java8 issue.Gábor Boskovits2018-03-04
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/java.scm (antlr3-3.3)[source]: Add patch. * gnu/packages/patches/antlr3-3_3-fix-java8-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
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