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* gnu: bcftools: Fix building on aarch64.Efraim Flashner2017-08-15
| | | | | | * gnu/packages/patches/bcftools-regidx-unsigned-char.patch: New file. * gnu/packages/bioinformatics.scm (bcftools)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: e2fsprogs: Update to 1.43.5.Marius Bakke2017-08-15
| | | | | | | * gnu/packages/patches/e2fsprogs-32bit-quota-warnings.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/linux.scm (e2fsprogs): Update to 1.43.5. [source]: Use patch.
* gnu: cvs: Fix CVE-2017-12836.Leo Famulari2017-08-14
| | | | | | * gnu/packages/patches/cvs-2017-12836.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/version-control.scm (cvs)[source]: Use it.
* gnu: qemu: Fix CVE-2017-{10664,10806,10911,11434}.Alex Vong2017-08-13
| | | | | | | | | | | * gnu/packages/patches/qemu-CVE-2017-10664.patch, gnu/packages/patches/qemu-CVE-2017-10806.patch, gnu/packages/patches/qemu-CVE-2017-10911.patch, gnu/packages/patches/qemu-CVE-2017-11434.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/virtualization.scm (qemu)[source]: Use them. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: curl: Fix i686 test failure.Marius Bakke2017-08-13
| | | | | | * gnu/packages/patches/curl-bounds-check.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/curl.scm (curl-7.55.0)[source]: Use it.
* gnu: Add mpd service.Peter Mikkelsen2017-08-13
| | | | | | | | | | * doc/guix.texi: Add documentation. * gnu/services/audio.scm (<mpd-configuration>): New record type. (mpd-service-type): New service type. * gnu/tests/audio.scm: New file. * gnu/local.mk: Add new files. Signed-off-by: Christopher Baines <mail@cbaines.net>
* gnu: catdoc: Fix CVE-2017-11110.Alex Vong2017-08-12
| | | | | | | | * gnu/packages/patches/catdoc-CVE-2017-11110.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/textutils.scm (catdoc)[source]: Use it. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: openjpeg: Update to 2.2.0 [security fixes].Marius Bakke2017-08-10
| | | | | | | | | | | | | | | | | In addition to the patches we already had (which are not mentioned in the ChangeLog, but verified by following their respective GitHub issues) this release also fixes CVE-2016-9112, CVE-2016-5139, CVE-2016-5152, CVE-2016-5158, CVE-2016-5159, CVE-2016-1626 and CVE-2016-1628. See <https://github.com/uclouvain/openjpeg/blob/v2.2.0/CHANGELOG.md> for details. * gnu/packages/patches/openjpeg-CVE-2016-9572-CVE-2016-9573.patch, gnu/packages/patches/openjpeg-CVE-2016-9850-CVE-2016-9851.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/image.scm (openjpeg): Update to 2.2.0. [source](patches): Remove. * gnu/packages/gstreamer.scm (gst-plugins-bad)[arguments]: Add phase to patch hard-coded openjpeg-2.1 path.
* gnu: Add igraph.Ricardo Wurmus2017-08-09
| | | | | * gnu/packages/graph.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu: ruby-puma: Update to 3.9.1.Ben Woodcroft2017-08-08
| | | | | | | | | * gnu/packages/ruby.scm (ruby-puma): Update to 3.9.1. [source]: Remove patch. [arguments]: Disable tests. [native-inputs]: Remove field. * gnu/packages/patches/ruby-puma-ignore-broken-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: ntfs-3g: Update to 2017.3.23.Tobias Geerinckx-Rice2017-08-07
| | | | | | | * gnu/packages/linux.scm (ntfs-3g): Update to 2017.3.23. [source]: Remove patch. * gnu/packages/patches/ntfs-3g-CVE-2017-0358.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Add motti.Efraim Flashner2017-08-06
| | | | * gnu/packages/motti.scm (motti): New variable.
* gnu: libtasn1: Fix CVE-2017-10790.Leo Famulari2017-08-05
| | | | | | * gnu/packages/patches/libtasn1-CVE-2017-10790.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/tls.scm (libtasn1/fixed)[source]: Use it.
* gnu: php: Update to 7.1.8.Julien Lepiller2017-08-04
| | | | | | * gnu/packages/patches/gd-CVE-2017-7890.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it * gnu/packages/php.scm (php): Update to 7.1.8.
* gnu: fabric: Update to 1.13.2.Tobias Geerinckx-Rice2017-08-04
| | | | | | | * gnu/packages/admin.scm (fabric): Update to 1.13.2. Remove outdated comments. [source]: Remove ‘patches’. * gnu/packages/patches/fabric-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: glibc@2.22: Fix security issues.Efraim Flashner2017-08-02
| | | | | | | | Fixes CVE-2015-{5180,7547}, CVE-2016-{3075,3706,4429}. * gnu/packages/base.scm (glibc@2.22)[source]: Add patches. * gnu/packages/patches/glibc-CVE-2015-7547.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: glibc@2.23: Fix CVE-2015-5180, CVE-2016-{3075,3706,4429}.Efraim Flashner2017-08-02
| | | | | | | | * gnu/packages/base.scm (glibc@2.23)[source]: Add patches. * gnu/packages/patches/glibc-CVE-2016-3075.patch, gnu/packages/patches/glibc-CVE-2016-3706.patch, gnu/packages/patches/glibc-CVE-2016-4429.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
* gnu: glibc@2.24: Fix CVE-2015-5180.Efraim Flashner2017-08-02
| | | | | | * gnu/packages/base.scm (glibc@2.24)[source]: Add patch. * gnu/packages/patches/glibc-CVE-2015-5180.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: guile-ssh: Update to 0.11.2.Ludovic Courtès2017-08-01
| | | | | | | | | * gnu/packages/ssh.scm (guile-ssh): Update to 0.11.2. [source]: Remove 'patches', 'modules', and 'snippet'. * gnu/packages/patches/guile-ssh-channel-finalization.patch, gnu/packages/patches/guile-ssh-double-free.patch, gnu/packages/patches/guile-ssh-rexec-bug.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove them.
* gnu: python-pbr-minimal: Update to 3.0.1Muriithi Frederick Muriuki2017-08-01
| | | | | | | | | * gnu/packages/python.scm (python-pbr-minimal): Update to 3.0.1 [source]: Update hash and remove patch. * gnu/packages/patches/python-pbr-fix-man-page-support.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: libgit2: Update to 0.26.0.Ludovic Courtès2017-07-31
| | | | | | | * gnu/packages/version-control.scm (libgit2): Update to 0.26.0. Remove "libgit2-use-after-free.patch". * gnu/packages/patches/libgit2-use-after-free.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it.
* services: Add memcached.Christopher Baines2017-07-30
| | | | | | | | | | * gnu/services/databases.scm (memcached-service-type, %memcached-accounts): New variables. (<memcached-configuration>): New record type. (memcached-service-type): New procedures. * gnu/tests/databases.scm: New file. * doc/guix.texi (Database Services): Document the new memcached service. * gnu/local.mk (GNU_SYSTEM_MODULES): Add entry for tests/databases.scm.
* gnu: erlang: Fix man-pages search path of 'erl -man'.Peter Mikkelsen2017-07-29
| | | | | | | | * gnu/packages/patches/erlang-man-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/erlang.scm (erlang)[source]: Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: services: admin: Add tailon.Christopher Baines2017-07-29
| | | | | | | | | | | * gnu/services/admin.scm (<tailon-configuration>, <tailon-configuration-file>): New record types. (tailon-configuration-files-string, tailon-shepherd-service): New procedures. (%tailon-accounts, tailon-service-type: New variables. * doc/guix.texi (Monitoring Services: Document the Tailon service. * gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/tests/admin.scm. * gnu/tests/admin.scm: New file.
* gnu: mg: Move to (gnu packages text-editors).Ludovic Courtès2017-07-26
| | | | | | * gnu/packages/mg.scm: Remove. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove it. * gnu/packages/text-editors.scm (mg): New variable.
* gnu: evince: Update to 3.24.1.Kei Kebreau2017-07-25
| | | | | | | * gnu/packages/gnome.scm (evince): Update to 3.24.1. [source]: Remove obsolete patch. * gnu/packages/patches/evince-CVE-2017-1000083.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: perl-dbd-mysql: Fix CVE-2017-10788.Kei Kebreau2017-07-25
| | | | | | * gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/databases.scm (perl-dbd-mysql)[source]: Use it.
* gnu: Add guile2.0-bytestructures.Ludovic Courtès2017-07-25
| | | | | | | | | * gnu/packages/patches/guile-bytestructures-name-clash.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/guile.scm (guile-bytestructures)[source]: Use it. [arguments]: Unpack the source. [native-inputs]: New field. (guile2.0-bytestructures): New variable.
* gnu: gnome: Add deja-dup.Christopher Baines2017-07-24
| | | | | | * gnu/packages/gnome.scm (deja-dup): New variable. * gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch file entry.
* gnu: metabat: Update to 2.11.1.Ben Woodcroft2017-07-23
| | | | | | | | * gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1. [source]: Add patch to fix compilation. [arguments]: Adjust regular expressions modifying 'SConstruct'. * gnu/packages/patches/metabat-fix-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: bcftools: Update to 1.5.Ben Woodcroft2017-07-23
| | | | | | | | | * gnu/packages/bioinformatics.scm (bcftools): Update to 1.5. [origin]: Remove fix-makefile patch. [arguments]: Add configure flags, add LIBS make flag. Do not delete configure phase. * gnu/packages/patches/bcftools-fix-makefile.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: bcftools: Update to 1.4.1.Ben Woodcroft2017-07-23
| | | | | | | | * gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1. [arguments]: Move Makefile modifications from here ... [source]: ... to added patch. Adjust patch for update to 1.4. * gnu/packages/patches/bcftools-fix-makefile.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: quassel: Enable TLS.Ryan Moe2017-07-22
| | | | | | | | * gnu/packages/patches/quassel-fix-tls-check.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/irc.scm (quassel)[source]: Use it. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add openmolar.Ricardo Wurmus2017-07-22
| | | | | | | * gnu/packages/medical.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Co-authored-by: Quiliro <quiliro@fsfla.org>
* gnu: Add cran module.Ricardo Wurmus2017-07-22
| | | | | | * gnu/packages/cran.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/statistics.scm (r-colorspace): Move to cran.scm.
* gnu: Remove python-fake-factory leftovers.Marius Bakke2017-07-22
| | | | | | | This is a followup to c799eb2eb8b1a820147af96988eddaa9f752994b. * gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: python-pyopenssl: Update to 17.2.0.Marius Bakke2017-07-22
| | | | | | | | * gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.2.0. [native-inputs]: Add PYTHON-FLAKY. [source](patches): Remove.
* gnu: heimdal: Fix CVE-2017-{6594,11103}.Alex Vong2017-07-20
| | | | | | | * gnu/packages/patches/heimdal-CVE-2017-6594.patch, gnu/packages/patches/heimdal-CVE-2017-11103.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/kerberos.scm (heimdal)[source]: Use them.
* gnu: Remove a left-over patch.Leo Famulari2017-07-20
| | | | | | | This is a followup to commit 426b0b898f70a58133d80779980f163a5761686e. * gnu/packages/patches/pcre-CVE-2017-7186.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Add libusb@0.1.Jonathan Brielmaier2017-07-20
| | | | | | | | * gnu/packages/libusb.scm (libusb-0.1): New variable. * gnu/packages/patches/libusb-0.1-disable-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: Add patches missing from dist_patch_DATA.Ben Woodcroft2017-07-20
| | | | | | | | | | Reported by Eric Bavier. * gnu/local.mk (dist_patch_DATA): Add gnu/packages/patches/hmmer-remove-cpu-specificity.patch, gnu/packages/patches/jacal-fix-texinfo.patch, gnu/packages/patches/python-pbr-fix-man-page-support.patch and gnu/packages/patches/vsearch-unbundle-cityhash.patch.
* gnu: Rename (gnu packages gforth) to (gnu packages forth).ng02017-07-18
| | | | | | * gnu/local.mk (GNU_SYSTEM_MODULES): Rename gforth.scm to forth.scm. * gnu/packages/gforth.scm: Rename file to forth.scm. * gnu/packages/forth.scm: Renamed from gforth.scm.
* gnu: qemu: Fix CVE-2017-11334.Leo Famulari2017-07-17
| | | | | | * gnu/packages/patches/qemu-CVE-2017-11334.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/virtualization.scm (qemu)[source]: Use it.
* gnu: chicken: Fix CVE-2017-11343.Leo Famulari2017-07-17
| | | | | | * gnu/packages/patches/chicken-CVE-2017-11343.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/scheme.scm (chicken)[source]: Use it.
* gnu: Add Poly/ML.Andy Patterson2017-07-17
| | | | | | | * gnu/packages/sml.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: supertuxkart: Fix build on aarch64.Efraim Flashner2017-07-17
| | | | | | * gnu/packages/games.scm (supertuxkart)[source]: Add patch. * gnu/packages/patches/supertuxkart-angelscript-ftbfs.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: Add sooperlooper.Ricardo Wurmus2017-07-17
| | | | | | * gnu/packages/patches/sooperlooper-build-with-wx-30.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/music.scm (sooperlooper): New variable.
* gnu: Rename (gnu packages qemu) to (gnu packages virtualization).宋文武2017-07-15
| | | | | | | | | * gnu/packages/qemu.scm: Rename this ... * gnu/packages/virtualization.scm: ... to this. * gnu/local.mk (GNU_SYSTEM_MODULES), gnu/packages/bootloaders.scm, gnu/packages/debug.scm, gnu/packages/gnome.scm, gnu/system/vm.scm, gnu/tests/install.scm: Adjust accordingly.
* bootloader: Add u-boot.Danny Milosavljevic2017-07-15
| | | | | | * gnu/bootloader/u-boot.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi: Document it.
* gnu: evince: Fix CVE-2017-1000083.Marius Bakke2017-07-13
| | | | | | * gnu/packages/patches/evince-CVE-2017-1000083.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (evince)[source]: Use it.
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