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* read-print: Report missing closing parens instead of looping.Ludovic Courtès2022-08-10
| | | | | | | | | | | | | Fixes <https://issues.guix.gnu.org/57093>. Reported by Mohammed AMAR-BENSABER <renken@shione.net>. Previously 'read-with-comments' would enter an infinite loop. * guix/read-print.scm (read-with-comments)[missing-closing-paren-error]: New procedure. Call it when 'loop' as called from 'liip' returns EOF. * tests/read-print.scm ("read-with-comments: missing closing paren"): New test.
* ssh: 'open-ssh-session' gracefully handles connection timeouts.Ludovic Courtès2022-08-10
| | | | * guix/ssh.scm (open-ssh-session): Add case for 'again.
* gnu: Add r-liana.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/bioinformatics.scm (r-liana): New variable.
* gnu: Add r-omnipathr/devel.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/bioinformatics.scm (r-omnipathr/devel): New variable.
* gnu: r-bayesfactor: Update to 0.9.12-4.4.Ricardo Wurmus2022-08-10
| | | | | * gnu/packages/statistics.scm (r-bayesfactor): Update to 0.9.12-4.4. [propagated-inputs]: Remove r-gtools.
* gnu: r-effects: Update to 4.2-2.Ricardo Wurmus2022-08-10
| | | | | * gnu/packages/statistics.scm (r-effects): Update to 4.2-2. [native-inputs]: Remove r-car.
* gnu: r-cairo: Update to 1.6-0.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/statistics.scm (r-cairo): Update to 1.6-0.
* gnu: r-lme4: Update to 1.1-30.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/statistics.scm (r-lme4): Update to 1.1-30.
* gnu: r-quantreg: Update to 5.94.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/statistics.scm (r-quantreg): Update to 5.94.
* gnu: r-vgam: Update to 1.1-7.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/statistics.scm (r-vgam): Update to 1.1-7.
* gnu: r-robust: Update to 0.7-1.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/statistics.scm (r-robust): Update to 0.7-1.
* gnu: r-pcapp: Update to 2.0-2.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/statistics.scm (r-pcapp): Update to 2.0-2.
* gnu: r-gtools: Update to 3.9.3.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/statistics.scm (r-gtools): Update to 3.9.3.
* gnu: r-r-cache: Update to 0.16.0.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/statistics.scm (r-r-cache): Update to 0.16.0.
* gnu: r-rcurl: Update to 1.98-1.8.Ricardo Wurmus2022-08-10
| | | | | * gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.8. [inputs]: Add zlib.
* gnu: r-rsqlite: Update to 2.2.15.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.15.
* gnu: r-latticeextra: Update to 0.6-30.Ricardo Wurmus2022-08-10
| | | | | * gnu/packages/statistics.scm (r-latticeextra): Update to 0.6-30. [propagated-inputs]: Add r-interp and r-mass.
* gnu: r-devtools: Update to 2.4.4.Ricardo Wurmus2022-08-10
| | | | | | * gnu/packages/statistics.scm (r-devtools): Update to 2.4.4. [propagated-inputs]: Remove r-callr, r-httr, and r-rstudioapi; add r-miniui, r-pkgdown, r-profvis, and r-urlchecker.
* gnu: r-roxygen2: Update to 7.2.1.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/statistics.scm (r-roxygen2): Update to 7.2.1.
* gnu: r-locfit: Update to 1.5-9.6.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.6.
* gnu: r-tibble: Update to 3.1.8.Ricardo Wurmus2022-08-10
| | | | | * gnu/packages/statistics.scm (r-tibble): Update to 3.1.8. [propagated-inputs]: Remove r-ellipsis.
* gnu: r-rlang: Update to 1.0.4.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/statistics.scm (r-rlang): Update to 1.0.4.
* gnu: r-stringi: Update to 1.7.8.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/statistics.scm (r-stringi): Update to 1.7.8.
* gnu: r-estimability: Update to 1.4.1.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/statistics.scm (r-estimability): Update to 1.4.1.
* gnu: r-mass: Update to 7.3-58.1.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/statistics.scm (r-mass): Update to 7.3-58.1.
* gnu: r-paws-common: Update to 0.4.0.Ricardo Wurmus2022-08-10
| | | | | * gnu/packages/cran.scm (r-paws-common): Update to 0.4.0. [propagated-inputs]: Add r-curl.
* gnu: r-dismo: Update to 1.3-8.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-dismo): Update to 1.3-8.
* gnu: r-rapiserialize: Update to 0.1.1.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-rapiserialize): Update to 0.1.1.
* gnu: r-textplot: Update to 0.2.2.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-textplot): Update to 0.2.2.
* gnu: r-stars: Update to 0.5-6.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-stars): Update to 0.5-6.
* gnu: r-pdftools: Update to 3.3.0.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-pdftools): Update to 3.3.0.
* gnu: r-pkgdown: Update to 2.0.6.Ricardo Wurmus2022-08-10
| | | | | * gnu/packages/cran.scm (r-pkgdown): Update to 2.0.6. [propagated-inputs]: Remove r-crayon; add r-cli.
* gnu: r-downlit: Update to 0.4.2.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-downlit): Update to 0.4.2.
* gnu: r-mlr3: Update to 0.13.4.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-mlr3): Update to 0.13.4.
* gnu: r-paradox: Update to 0.10.0.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-paradox): Update to 0.10.0.
* gnu: r-mlr3measures: Update to 0.5.0.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-mlr3measures): Update to 0.5.0.
* gnu: r-qtl: Update to 1.52.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-qtl): Update to 1.52.
* gnu: r-tidymodels: Update to 1.0.0.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-tidymodels): Update to 1.0.0.
* gnu: r-modeldata: Update to 1.0.0.Ricardo Wurmus2022-08-10
| | | | | * gnu/packages/cran.scm (r-modeldata): Update to 1.0.0. [propagated-inputs]: Add r-dplyr, r-mass, r-purrr, r-rlang, and r-tibble.
* gnu: r-workflowsets: Update to 1.0.0.Ricardo Wurmus2022-08-10
| | | | | * gnu/packages/cran.scm (r-workflowsets): Update to 1.0.0. [propagated-inputs]: Add r-glue, r-parsnip, and r-pillar.
* gnu: r-tune: Update to 1.0.0.Ricardo Wurmus2022-08-10
| | | | | * gnu/packages/cran.scm (r-tune): Update to 1.0.0. [propagated-inputs]: Add r-tidyselect.
* gnu: r-rsample: Update to 1.1.0.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-rsample): Update to 1.1.0.
* gnu: r-workflows: Update to 1.0.0.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-workflows): Update to 1.0.0.
* gnu: r-igraph: Update to 1.3.4.Ricardo Wurmus2022-08-10
| | | | | * gnu/packages/cran.scm (r-igraph): Update to 1.3.4. [propagated-inputs]: Add r-rlang.
* gnu: r-rsconnect: Update to 0.8.27.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-rsconnect): Update to 0.8.27.
* gnu: r-bdgraph: Update to 2.68.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-bdgraph): Update to 2.68.
* gnu: r-rockchalk: Update to 1.8.157.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-rockchalk): Update to 1.8.157.
* gnu: r-matrixextra: Update to 0.1.11.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-matrixextra): Update to 0.1.11.
* gnu: r-quanteda: Update to 3.2.2.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-quanteda): Update to 3.2.2.
* gnu: r-proxyc: Update to 0.3.0.Ricardo Wurmus2022-08-10
| | | | * gnu/packages/cran.scm (r-proxyc): Update to 0.3.0.
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