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* gnu: Add watson.Sebastian Gibb2024-08-27
| | | | | | | * gnu/packages/task-management.scm (watson): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: Ifc7671e6ec805e9e20e9f0c863c205a2848d4d61
* gnu: Add python-pytest-datafiles.Sebastian Gibb2024-08-27
| | | | | | * gnu/packages/python-check.scm (python-pytest-datafiles): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
* gnu: python-click-didyoumean: Enable tests.Sharlatan Hellseher2024-08-27
| | | | | | | | * gnu/packages/python-xyz.scm (python-click-didyoumean): Enable tests. [source]: Swap to git checkout containing tests. [native-inputs]: Add python-pytest. Change-Id: I741e52c92c1c1b5ccde557061a8be0010974610f
* gnu: python-click-didyoumean: Update to 0.3.1.Sharlatan Hellseher2024-08-27
| | | | | | | | | * gnu/packages/python-xyz.scm (python-click-didyoumean): Update to 0.3.1. [source]: Swap to a new PyPI packae name ("-" to "_"). [build-system]: Swap to pyproject-build-system. [native-inputs]: Add python-poetry-core. Change-Id: I24f2e632732c8204f816806c7ad067d327bb3d28
* gnu: Add emacs-comment-tags.Danny Milosavljevic2024-08-27
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-comment-tags): New variable. Change-Id: I33986a415384523129a6a717cfa4b21091982a0c
* gnu: Add emacs-fortran-tags.Danny Milosavljevic2024-08-26
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-fortran-tags): New variable. Change-Id: Id54e97e6fb0697861ee113e060a3fa38d5ca8143
* gnu: Add emacs-plz-event-source.Roman Scherer2024-08-26
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-plz-event-source): New variable. Change-Id: I66fc237fb191c0406fcf2d08c2938264e2dd9b95 Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: Add emacs-plz-media-type.Roman Scherer2024-08-26
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-plz-media-type): New variable. Change-Id: Ib38d91e1cc642afd34b480967a34e0db0e28e4c6 Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: Add emacs-composer.Rostislav Svoboda2024-08-26
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-composer): New variable. Change-Id: Iafd56804d00923adb9e377b55575bbd61e97b358 Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: denemo: Use HTTPS home page URI.Nicolas Goaziou2024-08-26
| | | | | | * gnu/packages/music.scm (denemo)[home-page]: Use HTTPS URI. Change-Id: I07386a8153ed37041d270e52e482d0d1334e6ce5
* gnu: nauty: Fix build.Nicolas Goaziou2024-08-26
| | | | | | * gnu/packages/maths.scm (nauty): Fix hash. Change-Id: I4837baf2c43279705f0445fd08ad2578e431b8cc
* gnu: castor: Update to 0.9.0.Nicolas Goaziou2024-08-26
| | | | | | | | | * gnu/packages/web.scm (castor): Update to 0.9.0. [arguments]<#:phases>: Relax Cargo version requirements. <#:cargo-inputs>: Update rust-dirs to 3, rust-linkify to 0.7, and rust-textwrap to 0.14. Change-Id: I3508e35ab45315d394cb714e7ab3f7c508f2de14
* gnu: Add rust-textwrap-0.14.Nicolas Goaziou2024-08-26
| | | | | | * gnu/packages/crates-io.scm (rust-textwrap-0.14): New variable. Change-Id: I434bfa3008b05170bc41f2f54c4a7ad90a85cbf2
* gnu: Add rust-linkify-0.7.Nicolas Goaziou2024-08-26
| | | | | | * gnu/packages/crates-io.scm (rust-linkify-0.7): New variable. Change-Id: I2bec446d5923766c060eb855f1dbec4a0f46f862
* gnu: naev: Update to 0.11.5.Nicolas Goaziou2024-08-26
| | | | | | * gnu/packages/games.scm (naev): Update to 0.11.5. Change-Id: I201190f949ddae53d892e26b93d8577149345d7f
* gnu: du-dust: Fix ZSH completion.Tobias Geerinckx-Rice2024-08-18
| | | | | | * gnu/packages/admin.scm (du-dust)[arguments]: Fix typo. Change-Id: Id139b5e213981e9cf9bfe63f661f75404ccf9b50
* gnu: sugar-turtlepond-activity: Fix metadata.Tobias Geerinckx-Rice2024-08-18
| | | | | | | | | It was copied from sugar-commander-activity and never updated. * gnu/packages/sugar.scm (sugar-turtlepond-activity) [home-page, synopsis, description]: Describe sugar-turtlepond-activity. Change-Id: I551dcabd200e4e5059cf3a47d5e7231fc79e1490
* gnu: hexchat: Update to 2.16.2.Tobias Geerinckx-Rice2024-08-18
| | | | | | * gnu/packages/messaging.scm (hexchat): Update to 2.16.2. Change-Id: If27085b95bc865aa8367b8dde6f1bcf8cb90e940
* gnu: unrar-free: Update to 0.3.1.Tobias Geerinckx-Rice2024-08-18
| | | | | | | * gnu/packages/compression.scm (unrar-free): Update to 0.3.1. [native-inputs, inputs]: Remove input labels. Change-Id: Ifa0d54ca22819e8e65a8a3140c94bc9063905873
* gnu: nauty: Update to 2.8.9.Nicolas Goaziou2024-08-26
| | | | | | | * gnu/packages/maths.scm (nauty): Update to 2.8.9. [arguments]<#:phases>: Add a phase for fixing a test. Change-Id: I854754ab372ef6ae1d5e13e14c0fc8a667177b4d
* gnu: r-yulab-utils: Update to 0.1.7.Ricardo Wurmus2024-08-26
| | | | | | | * gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.7. [propagated-inputs]: Remove r-httr2. Change-Id: Ib21bdcb122d4999cce48b71604042d4833285081
* gnu: r-sungeo: Update to 1.3.0.Ricardo Wurmus2024-08-26
| | | | | | | | | * gnu/packages/cran.scm (r-sungeo): Update to 1.3.0. [source]: Remove obsolete snippet. [propagated-inputs]: Remove r-sp; add r-rmapshaper. [native-inputs]: Add r-codetools. Change-Id: Iceca0e28314f31e326b7d7f8d4a03a71b770025f
* gnu: Add r-rmapshaper.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/cran.scm (r-rmapshaper): New variable. Change-Id: Iaef97544772fa75c143a2c68206e11a1533e385b
* gnu: Add r-geojsonsf.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/cran.scm (r-geojsonsf): New variable. Change-Id: I7ffac98fd2e59d3b65d62d38f7e1930647c64e9c
* gnu: Add r-sfheaders.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/cran.scm (r-sfheaders): New variable. Change-Id: Ia451593fb567ce9e88b5712a30f30ace2186edb2
* gnu: Add r-geometries.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/cran.scm (r-geometries): New variable. Change-Id: I290a5cc2bda00859d27c7a91341acb20708c9abc
* teams: Remove Matt from their team due to inactivity.Florian Pelz2024-08-26
| | | | | | * etc/teams.scm (Matthew Trzcinski): Remove from the DOCUMENTATION team. Change-Id: I6ab1f35086a2a1abc7c0436013efe223b44c7867
* doc: Remove duplicate search paths instructions.Florian Pelz2024-08-26
| | | | | | | * doc/guix.texi (Invoking guix pull): Remove instructions obsoleted by Binary Installation instructions. Change-Id: I18274aa8bacd11de8ee72bd83c817f945468cc13
* gnu: trealla: Update to 2.55.26.jgart2024-08-26
| | | | | | * gnu/packages/prolog.scm (trealla): Update to 2.55.26. Change-Id: I2a2652d2415d007fabf8974212cd35686336905f
* gnu: trealla: Update to 2.55.25.jgart2024-08-26
| | | | | | * gnu/packages/prolog.scm (trealla): Update to 2.55.25. Change-Id: I3c00edc6292c9e351ff514d3ca835236aa6c1d7e
* gnu: r-hmmcopy: Update to 1.46.0.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/bioconductor.scm (r-hmmcopy): Update to 1.46.0. Change-Id: I26c091fe4af549b01c98aac0a1fcdb058ff4ea71
* gnu: Add r-hmmcopy.Spencer King2024-08-26
| | | | | | | * gnu/packages/bioconductor.scm (r-hmmcopy): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: Iface547e865609427c356277edc904f3aec386d8
* gnu: Add r-fuzzyjoin.Spencer King2024-08-26
| | | | | | | * gnu/pacakges/cran.scm (r-fuzzyjoin): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: I47fd35ac4759c8c9cceaac32a5b78c2306404903
* gnu: r-omnipathr: Update to 3.12.3.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.12.3. Change-Id: I8ecd13d0d28003bb4ceb54b2c011fe6e8162df66
* gnu: r-bgeedb: Update to 2.30.1.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.30.1. Change-Id: I31f54552b1e12315657f5bd9b8dbef32f3a20066
* gnu: r-universalmotif: Update to 1.22.2.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.22.2. Change-Id: I71e3f29a2ec4b15fb6758b4b972d17b5d1f502c8
* gnu: r-gdsfmt: Update to 1.40.1.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.40.1. Change-Id: Ib9f585e2e2ad6ebc883a626da2138caffc909613
* gnu: r-xcms: Update to 4.2.3.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/bioconductor.scm (r-xcms): Update to 4.2.3. Change-Id: I17355573c0af40aa8b021da3e46a99a9709b411b
* gnu: r-clusterprofiler: Update to 4.12.5.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.12.5. Change-Id: I05468212919db2e385cd4bd604891b7deca4110f
* gnu: r-dose: Update to 3.30.4.Ricardo Wurmus2024-08-26
| | | | | | | * gnu/packages/bioconductor.scm (r-dose): Update to 3.30.4. [propagated-inputs]: Remove r-hdo-db and r-yulab-utils. Change-Id: Ia8ed1de853bd80ad4c482667c1b3547b113410ae
* gnu: r-gosemsim: Update to 2.30.2.Ricardo Wurmus2024-08-26
| | | | | | | * gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.30.2. [propagated-inputs]: Add r-dbi, r-digest, r-httr2, and r-r-utils. Change-Id: Idb915ec70b79f7464011e94256f68e940d63764f
* gnu: r-ensembldb: Update to 2.28.1.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.28.1. Change-Id: I8d03eb64092c04e5a05f5371e1d3589a2efcd4f1
* gnu: r-dmrcate: Update to 3.0.8.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.0.8. Change-Id: I62421e4df317cf33c08bdd4f65221c255d4c2dc7
* gnu: Add r-shinydisconnect.King, Spencer2024-08-26
| | | | | | | * gnu/packages/cran.scm (r-shinydisconnect): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: Ibf90c8902b6e6e6c45b7bdb921f310f14ac6b803
* committer: Avoid // in xpath.Ricardo Wurmus2024-08-26
| | | | | | | | | | | | | When using // we assume that the package definition's S-expression is a nesting of proper lists. This is not guaranteed to be true, because a package definition may contain alists. By using an explicit path to the field of interest we avoid recursion through all child nodes, thus avoiding child nodes that are more likely to contain improper lists. * etc/committer.scm.in (change-commit-message): Replace // with a path for the PACKAGE symbol. Change-Id: Idefaec9f5c3538484432e15a5865a68fc16e7369
* gnu: r-desctools: Update to 0.99.56.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/statistics.scm (r-desctools): Update to 0.99.56. Change-Id: I00956252d699c06408818cced7c0d04e409c61c7
* gnu: r-fdrtool: Update to 1.2.18.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/statistics.scm (r-fdrtool): Update to 1.2.18. Change-Id: I199c8f82b86c1b8cc40f5dffd6c55f1ff4b727e0
* gnu: r-rcppeigen: Update to 0.3.4.0.2.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.4.0.2. Change-Id: I3f9ddfdeb14da7bd42bd6e46389da2ec11dc9940
* gnu: r-minqa: Update to 1.2.8.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/statistics.scm (r-minqa): Update to 1.2.8. Change-Id: Ibdf083085acf888be22d807ea77f2b4caf28de44
* gnu: r-robust: Update to 0.7-5.Ricardo Wurmus2024-08-26
| | | | | | * gnu/packages/statistics.scm (r-robust): Update to 0.7-5. Change-Id: I14ceb59373e95295b2bb90712258571226f76205
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